Amar004351.1
Basic Information
- Insect
- Amiota mariae
- Gene Symbol
- nfxl1
- Assembly
- GCA_035041805.1
- Location
- JAWNKV010000187.1:3585275-3588449[-]
Transcription Factor Domain
- TF Family
- zf-NF-X1
- Domain
- zf-NF-X1 domain
- PFAM
- PF01422
- TF Group
- Zinc-Coordinating Group
- Description
- This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 2 3.6e+04 -8.1 6.4 15 19 155 159 154 159 0.82 2 19 0.13 2.3e+03 -0.3 0.4 4 10 190 196 189 196 0.95 3 19 2.8e-08 0.00049 21.0 14.1 1 18 204 220 204 221 0.98 4 19 1.4 2.6e+04 -3.7 1.2 5 10 246 251 246 251 0.92 5 19 0.024 4.2e+02 2.1 13.4 3 18 258 272 257 273 0.94 6 19 0.37 6.6e+03 -1.8 1.5 5 10 297 302 297 302 0.94 7 19 1.1e-07 0.0019 19.2 12.5 1 19 308 326 308 326 0.99 8 19 1.3 2.2e+04 -3.5 0.4 1 8 351 357 351 358 0.59 9 19 2.4e-09 4.2e-05 24.4 9.5 1 18 361 378 361 379 0.97 10 19 0.3 5.4e+03 -1.5 0.4 1 5 388 392 388 397 0.75 11 19 2.2e-07 0.0039 18.1 16.7 1 18 413 430 413 431 0.97 12 19 3.8e-08 0.00067 20.6 14.5 1 18 440 457 434 458 0.90 13 19 4.1e-05 0.72 10.9 7.1 10 18 504 512 501 513 0.90 14 19 0.012 2.1e+02 3.0 4.2 3 11 526 534 516 535 0.83 15 19 0.86 1.5e+04 -2.9 1.4 6 10 586 590 585 590 0.88 16 19 1.3e-05 0.24 12.4 5.4 1 12 596 607 596 607 0.97 17 19 0.035 6.2e+02 1.5 15.6 3 19 636 652 635 652 0.92 18 19 2 3.6e+04 -5.5 2.1 9 13 658 662 657 662 0.72 19 19 1.6e-06 0.028 15.4 13.3 1 18 703 722 703 723 0.89
Sequence Information
- Coding Sequence
- ATGGAGGCgagaaaaaaagcaaacaatgttgataataaatttatggaaaTACAAAAGCGAAATACAAAGGCAATACAACAATTCGCAGCTGAGTACTCATCAAGTTCTGAGGATGAAGAATTAGACGAAAAGACAATTCTAGATGGGCTTTATCAACATTATAAAATCGTGTCGTCGACAAATGAATCAAATAAACTAGCAAAAACATCAACATTCTTGGAAAATGCCCTTCACTCTGGTGCTGCATCCTGCTTAATATGCATTGGGAGTATTCGCAGAAACGAATCAGTATGGTCTTGCAAGGACTGTTATTGTCTTTTTCATCTAAACTGCATTCGCAGATGGGCTAATGACAGCATCAAACATTTAAAAGTTCGCTTGGAGCAGCAACAAGATGATCAGGGACATTATGTTGGTGGCGAATATATTCCTCCAAAGTCAAATGGTGCGCCCCATTGGTGTTGCCCTCAATGTCGAAGAGAATACAAACCAATTGAAAGACCTGAGCGGTACGAGTGTTTTTGTGGCAAGGAAATTGAACCGAAGCCACAGCCATTTTTGGTTCCTCATTCATGTGGTGAAATTTGTGGAAAATTGCTTCAACCACAATGCGGACATAGTTGTATGTTACTTTGTCATCCCGGCCCCTGTCCGCCTTGTGCTCAGTTTGCTACCGATACATGCCTTTGTAGTAAGTCGAAACCAAAATCAGTTCGTTGCTTAGACAAGAATTGGAAGTGTCGAGAATTGtgtCGAAAAATTCTTCCCTGTAAACATCTGTGTAACGAGATTTGCCATAAAAATTGTCCACCTTGTGGTAGAACAACTGAACAATCTTGTGAATGTGGTCAACAAGTTATGAAGCGACTCTGTTCGAACTTAGATTGGAAATGTCAAAAGATATGtggtaaaaaatattcttgtgGTATTCATAAATGTAAGAAAGTGTGTCATTCGGACTCTTGCGGCGAATGTCCACTGGGAATGCCAAGAACGTGCCCATGTGGTAAATCGaGCAAAATAGGTCCGTGTACTCAAACGATTGAGAATTGTGGAGATACGTGTCAGAAATTATTAAGATGTGGAATTCACACTTGTATTCAACGATGTCATCGGGGCGAATGCAATGTGTGCTTgacaagaataaaaaagaaatgtcgTTGCGGAATGCATGAGAAGGAGTTGCCCTGTTCTAAGGAGTTCCTTTGTGAAACTAAATGCAAACAGATGCGAGACTGTGGCAAACACGCTTGCAATCGAAAGTGTTGTGATGGTGAGTGTCCGCCATGTGAAAAGATATGTGGGAAACAGCTTTCTTGTAATAAACACAAATGTCAGTCAGTTTGCCACAATGGCCCATGTTATCCCTGTAATCTGCAGTCTCAGGTAAATTGTCGTTGTGGGAAGACTCGGAAGAATGTACCATGTGGCCGGGAACGTAGTTTTAAAATAGTTTGCCTAGAAATTTGTCGtATAACATCTAAATGCCATCATCCAACTACTCATCGTTGTCATAAAGGCGAATGTCCACCctgtaataaaaaatgtggTCTACCAAATGATTCCAATGGCTGTCGTCATAAATGCATGGCAAATTGTCATGCAGCGGTTCGAGTGACATCCTCAGTTTCTCACCCAAAAAAGtatgaATATAAATCACTTCCACATCCGAGATGCGAGGAGAAGGTTTTAGTAAATTGTATCGGTGGTCATGAAGTTTGCGAATGGCCATGCTGGAATTCGAAACCATCCTCATGCCAGCGCAAATGCAAGCGAAAACTTGTTTGTGGAAGTCATAGTTGTCAGTTAGTGTGTCACAGTGTACCAGACATTCATGATAACAagCAACAAGACGGTTGTGCTGGCTGTGAAGAGGGTTGCAACTTACTTCGTCCATTGGGTTGTACACATCCTTGTACTAAGGCCTGTCACTTACCACCTTGTGAGCCTTGTAAAGTTaatgtgaaaacaaaatgtcaTTGTGGATTAACACAAGTATTTTATAAGTGCACTGAATACTTTGCTACATCAAATTCTGAACAAGAAATTCATCTGCGGCAGGAACAATTAAAAAGCTGTGGAAATCGCTGCCTAAAAAATTTTCCATGTGGTCATCGCTGCACTTCAAAATGTCATTCAGGAAAATGTCCCAATCCGGAATCATGCcgtaaaaaagtaaaaatttattgcttaTGCCAAAGATTAAAAGTGGAAGTAAGTTGTGAAAAAATTCGTATGGGTCAAGTAGAAATACCGTGTGACGAGCACTGCCTGGCTGAACTTGAAAAAGCTGAGGAAATTGAAAAGAAGCAATTGAAACAGATGCAAAGTGaagagaaaatcaaaaatcaacttgaaattgaaCAGTTCGAGAAAAAGTTTGGAAAACGAAAATACAAAGAACGCAAAGTGGTTGCTAAAACAGTTAAGTCAACGATAAACTGGAAAAGTATATCCATCTATGCTGGCATTGCAATAACCATTATATTAGCTATGGCTGTCGCACTTTATGCtgacaattga
- Protein Sequence
- MEARKKANNVDNKFMEIQKRNTKAIQQFAAEYSSSSEDEELDEKTILDGLYQHYKIVSSTNESNKLAKTSTFLENALHSGAASCLICIGSIRRNESVWSCKDCYCLFHLNCIRRWANDSIKHLKVRLEQQQDDQGHYVGGEYIPPKSNGAPHWCCPQCRREYKPIERPERYECFCGKEIEPKPQPFLVPHSCGEICGKLLQPQCGHSCMLLCHPGPCPPCAQFATDTCLCSKSKPKSVRCLDKNWKCRELCRKILPCKHLCNEICHKNCPPCGRTTEQSCECGQQVMKRLCSNLDWKCQKICGKKYSCGIHKCKKVCHSDSCGECPLGMPRTCPCGKSSKIGPCTQTIENCGDTCQKLLRCGIHTCIQRCHRGECNVCLTRIKKKCRCGMHEKELPCSKEFLCETKCKQMRDCGKHACNRKCCDGECPPCEKICGKQLSCNKHKCQSVCHNGPCYPCNLQSQVNCRCGKTRKNVPCGRERSFKIVCLEICRITSKCHHPTTHRCHKGECPPCNKKCGLPNDSNGCRHKCMANCHAAVRVTSSVSHPKKYEYKSLPHPRCEEKVLVNCIGGHEVCEWPCWNSKPSSCQRKCKRKLVCGSHSCQLVCHSVPDIHDNKQQDGCAGCEEGCNLLRPLGCTHPCTKACHLPPCEPCKVNVKTKCHCGLTQVFYKCTEYFATSNSEQEIHLRQEQLKSCGNRCLKNFPCGHRCTSKCHSGKCPNPESCRKKVKIYCLCQRLKVEVSCEKIRMGQVEIPCDEHCLAELEKAEEIEKKQLKQMQSEEKIKNQLEIEQFEKKFGKRKYKERKVVAKTVKSTINWKSISIYAGIAITIILAMAVALYADN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00063262;
- 90% Identity
- iTF_00063262;
- 80% Identity
- -