Amar013519.1
Basic Information
- Insect
- Amiota mariae
- Gene Symbol
- -
- Assembly
- GCA_035041805.1
- Location
- JAWNKV010000337.1:8153075-8158066[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.016 2.1 9.9 1.3 2 23 376 398 375 398 0.94 2 10 0.017 2.2 9.8 4.6 2 23 551 573 551 573 0.91 3 10 0.0014 0.19 13.2 1.1 2 23 684 706 683 706 0.95 4 10 0.026 3.4 9.3 3.2 2 19 816 833 816 838 0.93 5 10 0.00044 0.057 14.9 2.5 3 23 993 1014 992 1014 0.97 6 10 0.0024 0.32 12.5 1.5 2 23 1068 1090 1067 1090 0.93 7 10 0.013 1.7 10.2 3.6 2 23 1137 1159 1136 1159 0.96 8 10 0.13 17 7.1 4.2 2 23 1173 1195 1172 1195 0.92 9 10 0.0029 0.38 12.2 2.3 2 23 1270 1292 1269 1292 0.95 10 10 0.06 7.8 8.1 0.6 1 23 1387 1409 1387 1409 0.99
Sequence Information
- Coding Sequence
- atggcCGCTTCAATATATGCCACCCCACCGCCAGACTTGAGCAACGAGGATACTGCGTTATCTGATGTATCCAATCATTCGACGAACacattaaacaacaacaacaacaacacacgacgaagcagcaacagtaatagcagcagcagcaacaacataaatcatacaataaatacaacaacaacaacaacaacaaatacaaatcataatcattcccaacaacaacagcaacaaagtcACGATGAAGCCACATCAACTACGACAACTATGGAGGCGGCGGCATCCACAACATCGAtagcaacaattacaacatcaacagtaacagcaacagcaacagcgaGTATGTCGCCCACAACACTGccaactataacaacaacaccaacaccaacaacaacagcaacagaaacatgCACAGTCCCAggcatatcatcatcatcaccatcatcatcgcccAATTCACCAAACTCATTAAACTCTCATACGCTCAAGCAACGTAAACGCAACATTGCTGAAGTCCTTGCTCTGGATAATGCTGGACAAGATTCCAGAAGCAGCACAAATGCTGATGCACTCACCAACaataatgatgctgatgctgatgatgccgATAATAGTAATATTGATGACGAGGGGCGACCATCCAACGAATTGACAGAAGCCAATTCGACAATGGCAATGAACGCTGTCGCAGCGGCTGCCAATGCAGCCATGCAATTGCGTCTACTGGAAGCCATCAATGATGCAGCCAAGAAGCGTCGCAAACAACACAATCCCAGTCGACATGAAGCACTCAACTTGAGCAATGCCACCGAACATGCAGTGACATCAACAGATGAACAAGCAAATGAAATCGATTATGAGGAAAAGTTATCAAAAATGTTCTTACCCAAATCTATTGAGCAGTTGAAGGAGCATTTTGAACTGttacaaaagcagcagcagcaacaacatcagcaacagcaacaacatcagcaacagcaacagcaacaacatcagcaacagcagcaacagcaacaggatATTGAAAACATATCACAAGCAAATCCATTAATGGATGTAGACCGGCAGTCCAGATGTGATGGCGATAGTGAACACTTGTTGGATGCCTCCAAGAATCCTTATCACACTTATTGTAAAGAATGCGGTGAGAATTTCGAAACAGATTTCAAACTCAGTTTGCATATGTTACACGAGCATAATCCAAATGACAATGGCAATGATGGTGGCAATGGTAGTACAAACCCCAATACTTCTAACATGGATCACGCAGCTATGTCACTTGGTTTTTTTGCTTCAGTTAAAGTGAAACTTGAACATAGCGATAGTCCAACGGGATGTGGAAATGAGAATGAGGCACCCACTCCAAACGATGACAGCAGTGACAATGTTCAACTGAACTTaagaaagcagcagcagcagcagcagcaccaacacTTGCCGCATTCGGCTACGGAAATGTTGACAAATGGCAAGGATCATTGGTTGAATGCtttgccaccaccaccgcctGGTTTTCCACCTGGCTTCCCACCAGAGGCAGCTGCCGCTGCCGCACTCAGTGCTAGTGGATATTTGCCATTACTAGGAGTACCCGGATTTCCTGGAGTTGATGGCTTGAATCGTCCGCCATTGAGAATTTTTAATCCGGAAGCTTACTGTGAACTCTGCAATAAGGAATTCTgtaataagtattttcttaAGACTCACAAGGCAAACAAACATGGCATCTATGACCCGGTAGGTGATGCTGGTGGtggtaataacaacaatagcagcagtgcgaataataacaacagtgCTGGAGGATTGAGTGCCatgaatcaaatttttcaattacaaatgcagcagcagcaacaacaacagcaacagcagcaccagcagcaacaacaattgcaacaactacaattcCAACAGAAGGCAGCCGctgaacaacaacagaaacagcaacagcagcagcagcagcaacaacagcaacaacaacagcagcaacaggcTGCCCTGGATGCTTTGTCCCAGCAACAATCGCCTTCAACAGCGCCACCTGCTACTGTTCAATGTGACATTTGCTCAAAGCgttttacaaatatatttgcaatGCGTCGCCATCGCACCAAGGTACATGAGCCGCGACGCGAGAGTCCCAATAGTAGCTCAACCCAAGCATCAACGCCAACGACACCCATTAAAACCGAGCCACCAGCTTCCCAGCAGCAACAGCCCATTAACAGCACAGAGTCCAGTGCTGCGTATAGCAACTCCTTAACTTTACCCGAACCGAAACCATTTGAAATGCCCGACGGCTTTCGTCAGGACTTTACACTTGAACAAGAGGAAGTCTCCTTTACACCTCAGCCACGAAAGCTTTCACCCCAGATGCAACAACAGGCACGCGATGCCAATTTCGCACACGACAAACTTCGTCGCTTGGGCGTGCTCAATCCAGAGGCTTATTGTGAGGTATGTGGCAAGGAATACTGCAACAAATACTTTCTACGTACACATAAATGGAAGCGACATGGCATCTTTGTGCCACCCGATGACCTCAAGGATGAGCAGTTGCAATTAGCCCAAAAGATGGCCTGGCCATTTATGAATCTACCGGGCATGCCACTCAATTTGATGCTTGCTAATGAAAAAGCAGTGGCAGCACAACGTATGTTAGCTGCAGCGGCTGCAGCCAATGTGAATATTGCAGCTGAACCAGGCATTGGCCATGAAGAGAATGGACAGTCGCCGAAACGAATCAAATTGGAGCCCGCCGATCAAAGTGAGCTAACAAGCGATGCAATGGAAGCAGGCAATGCCATAGTACAAAGTGGGAACAGTATGCCCGGATCACCGGAACCACAGCAGCCGAAATTACCACACTTAGACATAAGTCAACTGCCACCAAGTCCTGAAGCAACTATGCAGAATCTACAAAAGTTGCAATCGATGATTCAACAATTGAATGACTTGAATGGAAAGCGACCAGTTGCATGCCACCTGTGTGGACGCGAATGTGAACATCAATATGCATTACAGGCTCATATCATGACAGAACATGCAGGCTTAACTGGTCTAGAGGGTGGCCCACTTGGATCATTACAGCAGCAATTctatcagcaacagcagtcaCTGctccaacaacagcagcaacatttgcaacagcaacaatcgCTGAAACTTTCTCCAAATGGTGGCTCACCAAATGGCAATGAGTTACGCTGTCATCAATGCGACCGAGATTTCCAAACACCTCAAGAATTTAAGCAACATATCACCGAGGTGCATTTACTGCCCGGAGGTAGTCCATTGCGTGAAGGCTTTTTTACGCCTGACCGACCCATTAATCCAAATGCGgctggtgttggtggtggtggtggcggcccAACCGGGCGTCCACCGTATACAATCACGCCGACAAGCAGCTACTGTGAGATTTGTAATAAAGAATTGtgcaacaaatatttcatGAAAACACATATGCAACGCATGCACGGCATCGAAATCGAGAATGGCGCTCAAATTGGCGGAGTCGTTTGTAACATTTGTAACAAGGAGCTCTGCAGCAAATACTTTCTGCGTGTTCACAAGCATAACACGCATGGCATTATTGAAGAAGGGTCACCATTGCCCCAACCTCGTGGTAGCAGTACCAATCAAAATGGCATCAAATTGGAAgcgcaacagcagcagcagcctcAAGCGCCACCACAGCCGACACCATCACTGCCAACACCCCAACAGCTCATGGAAAACGAGCTTTCGCGTGGTCCCAGTATGAGTCCATTCGGTGTCGTTACACCAGGCACAGCCAGCTATCAAGACACTTGTCCTTTATGCACTCGACATTTCCGAAGCTTCAAGTGGTTGCGCTCACATTTGATGAATGATCATGGTGCTGCCGGAATAGAGAAACTCCGTGAAATTGAACAACAATTCGGTAGCCTCAGCAAATCTAATAGTCCAACGCTCAAGATACCTAATGGTGTTACCCAAGCTGCTGTGCCCACGGCTGCAGCGTTGCTCAATCCTGTCAATATCGCACAGGCCCTTCAAAACCTCAATGCCCAACATTTGCTCGATCAAAAGCCTAAGCAGATGCTACCCAGCGGTGCCGCTAGCATGTTTGGTGCGGCCGTAGCCGAGCAGGCACTTCAATCGCCGCGCTATAAGGAATATCAATGTTCCTTGTGTCCTTTCACAACACCCTACTATGCATTTCTCTTTATACACGAACGTTCGCATGCGATTACAGATACCTCGGAAGCATCTCCAGCATCATTATTGGCACCAACTGCGGTGctgcaaccaacaacaacaagttcaGAAGACAAAATTAACTCAGCTTTGccactaaaacaacaacaaaagatgaTGCCAACTCCACCAGAAGAACCCACCAATCTGTCCACGCGCTCGCCGACACCCCCAACAACAAAGCGAAGTACACCAAGTCCAACAATGCCGCCGCAACTAGAATCTATAACAATACCCGAATCCCAACCAACTAGCAAGGCCAATACGCCAAGTCCTAGACCAACATCGAACACTGCCATTAAGGAGGCCTCATCGCCACCGCCCCCACTGTCCTCATTAAATTCGAAACTCGACTCTGCATTGCCATTATTGCCACATTCGCCCCCAACTTCCACGACCTTGGGAAATGGCCTGAAATCATCAGCACAACTACGTTCAGCAACCACATCACCCATTGAGTCTATCctgcatcaacaacaacgcaTGCTCAATGATTTGGCAACTAAGTCCGGCATACCAGCCGCCTATGCTCTCCCAAAGCCACTGGCTGATGGTGAACAGGTTGAATATCAAATGCAAGCTTTCCATATAGAAAGTTGCATTACCGAAGATGGTCGTGAAATGGATAATggcgataatgatgatgatgcagcaATGGCTGAACGTTTTATGCCCGCCATTGTTTTCCTACCAGTCAAGAAACCAATTAATGGCGCCGTTAAAAAGCTCAGCTTCAATTTGACGCCATCTTAA
- Protein Sequence
- MAASIYATPPPDLSNEDTALSDVSNHSTNTLNNNNNNTRRSSNSNSSSSNNINHTINTTTTTTTNTNHNHSQQQQQQSHDEATSTTTTMEAAASTTSIATITTSTVTATATASMSPTTLPTITTTPTPTTTATETCTVPGISSSSPSSSPNSPNSLNSHTLKQRKRNIAEVLALDNAGQDSRSSTNADALTNNNDADADDADNSNIDDEGRPSNELTEANSTMAMNAVAAAANAAMQLRLLEAINDAAKKRRKQHNPSRHEALNLSNATEHAVTSTDEQANEIDYEEKLSKMFLPKSIEQLKEHFELLQKQQQQQHQQQQQHQQQQQQQHQQQQQQQQDIENISQANPLMDVDRQSRCDGDSEHLLDASKNPYHTYCKECGENFETDFKLSLHMLHEHNPNDNGNDGGNGSTNPNTSNMDHAAMSLGFFASVKVKLEHSDSPTGCGNENEAPTPNDDSSDNVQLNLRKQQQQQQHQHLPHSATEMLTNGKDHWLNALPPPPPGFPPGFPPEAAAAAALSASGYLPLLGVPGFPGVDGLNRPPLRIFNPEAYCELCNKEFCNKYFLKTHKANKHGIYDPVGDAGGGNNNNSSSANNNNSAGGLSAMNQIFQLQMQQQQQQQQQQHQQQQQLQQLQFQQKAAAEQQQKQQQQQQQQQQQQQQQQQAALDALSQQQSPSTAPPATVQCDICSKRFTNIFAMRRHRTKVHEPRRESPNSSSTQASTPTTPIKTEPPASQQQQPINSTESSAAYSNSLTLPEPKPFEMPDGFRQDFTLEQEEVSFTPQPRKLSPQMQQQARDANFAHDKLRRLGVLNPEAYCEVCGKEYCNKYFLRTHKWKRHGIFVPPDDLKDEQLQLAQKMAWPFMNLPGMPLNLMLANEKAVAAQRMLAAAAAANVNIAAEPGIGHEENGQSPKRIKLEPADQSELTSDAMEAGNAIVQSGNSMPGSPEPQQPKLPHLDISQLPPSPEATMQNLQKLQSMIQQLNDLNGKRPVACHLCGRECEHQYALQAHIMTEHAGLTGLEGGPLGSLQQQFYQQQQSLLQQQQQHLQQQQSLKLSPNGGSPNGNELRCHQCDRDFQTPQEFKQHITEVHLLPGGSPLREGFFTPDRPINPNAAGVGGGGGGPTGRPPYTITPTSSYCEICNKELCNKYFMKTHMQRMHGIEIENGAQIGGVVCNICNKELCSKYFLRVHKHNTHGIIEEGSPLPQPRGSSTNQNGIKLEAQQQQQPQAPPQPTPSLPTPQQLMENELSRGPSMSPFGVVTPGTASYQDTCPLCTRHFRSFKWLRSHLMNDHGAAGIEKLREIEQQFGSLSKSNSPTLKIPNGVTQAAVPTAAALLNPVNIAQALQNLNAQHLLDQKPKQMLPSGAASMFGAAVAEQALQSPRYKEYQCSLCPFTTPYYAFLFIHERSHAITDTSEASPASLLAPTAVLQPTTTSSEDKINSALPLKQQQKMMPTPPEEPTNLSTRSPTPPTTKRSTPSPTMPPQLESITIPESQPTSKANTPSPRPTSNTAIKEASSPPPPLSSLNSKLDSALPLLPHSPPTSTTLGNGLKSSAQLRSATTSPIESILHQQQRMLNDLATKSGIPAAYALPKPLADGEQVEYQMQAFHIESCITEDGREMDNGDNDDDAAMAERFMPAIVFLPVKKPINGAVKKLSFNLTPS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00061488;
- 90% Identity
- -
- 80% Identity
- -