Amar001651.1
Basic Information
- Insect
- Amiota mariae
- Gene Symbol
- -
- Assembly
- GCA_035041805.1
- Location
- JAWNKV010000149.1:834425-838911[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.0031 0.4 12.2 0.0 1 23 181 204 181 204 0.97 2 13 0.014 1.8 10.1 0.9 2 23 253 275 252 275 0.97 3 13 0.03 3.9 9.1 0.8 1 23 443 466 443 466 0.92 4 13 0.077 10 7.8 3.7 2 23 516 538 515 539 0.94 5 13 0.00053 0.068 14.6 0.6 1 23 595 618 595 618 0.97 6 13 0.00029 0.037 15.4 1.2 2 23 669 691 669 691 0.97 7 13 0.0021 0.27 12.7 0.7 1 23 835 858 835 858 0.97 8 13 2.2e-05 0.0029 18.9 0.2 1 23 907 930 907 930 0.95 9 13 0.0022 0.28 12.7 3.7 2 23 980 1002 979 1002 0.97 10 13 0.01 1.3 10.6 1.7 1 23 1071 1094 1071 1094 0.92 11 13 0.065 8.5 8.0 1.5 1 21 1146 1166 1146 1167 0.95 12 13 0.00091 0.12 13.9 0.1 3 23 1259 1280 1258 1280 0.97 13 13 0.22 29 6.3 0.2 2 23 1330 1352 1329 1352 0.95
Sequence Information
- Coding Sequence
- ATGGAGAACATGGATCTTTGGAATATGTTTTCCACCAATTTTGTTGAAGGCGACGCCACCAGTATTAATGATAAATTACCCGAAAATAATGACgaacaaactaataataatgcaaatgGTAATGGAAGTAATGTTCATCATCGGGTTAAGCAGGAAATTctagatgatgataatgaaagaggagatgatgataatggggTTGGggttggtgatggtgatgatgatgatgatgggaatGGGGATGGGGATGGTGCTAACGaggaaaatgaagaaaatcttCTAGATGATGATTCGGACATGTTAATGGTAATGGATACTACAAATGATCATCAAACACAAAGTAATGATTCTATTAGAAGAAATCCTCGTCGTGGTGCCATTGAACCCGATGacgatgttatttttaattttgatcttAGACCATCAGTTGCAACAATGGATCCGCATCCGCAAAGGCCGAGTGGTGCAAGATTACCGCCCTCACAAATAAATCCAACCGATCGTTTGGGTAGAccaataaattatgaattagGTGTCATTTATATATGTCCAGCTTGCGGTTCAGAATTTCCAGTGCAAGATAAATGGAAGGCACATAtgaatacaaaacatgaatatAATACGCGGCAAGGCTTGAATTTTGTACGTGTGGATAAATTGTATCACAGATGCTTGGAATGCCGCAAGAACATTGCCATGCATAGCATGGAGAATCTCTTGAAACACAAATTCACACATTTACCACATCGTTGTGTCAAATGTGCCTTCTGTTTGCGTCAATATAAATATCGTCAAGATTTGATGGTACATTTGCGTACGCAACATTCTGAAGATGTAATAcaattaatgaaagaaaatggcaatggcaatggtcTTCGTCATaattcttcatcttcttcttcgaaATATTATTCACAATCCACAAGGTCCTCAACGACGGCATTTGGTGGCAGTAAAAACGATAATTCTGGTAGTGGTCGTTTAGCAATCTTAAATGTCAAAGAAAATGCAGTCGATATGTTTGAAGCTGATGATAGCAACATTGAAGTTCGTAATGAACCAGAAATGGATGATGAAGATTATGAAGCAATGGCTGGCAATAGTTTTAATATTCGAGCAATGTTTGATGATGACATGAGTCGCAGTTCATCACATTCAACTCTTCCCAACGGAAAACGGTTACGAGATAATGGCACAAATTCTTCTCTTGCTGATGtttctacatacaataatattgatgctggtgctgctgctgctgctggtgtcTGTGCTTCTGCTGTCAGTCGTCCAGGATCCAAAGATGAAGTATGTGAAGAttatatacattatatatGCCCGCAGTGCGGTACAGAATGTGAGACACATGCCCAATGGAGTCAACACATTGAGTTTGTACATGATTTCACCAGTCAACGTGGCTTGAATTTTAAACCATTGAATGCACAACAATCTCAATGTTTGGATTGTAATAGAcTTGTTGAACCTAATAATATAAAGGCATTGCAATCGCACAAATTCATCCATTTGCCACACAATGAATGGATGCGTTGTAAGCTATGTTACAAAGGATTTAAGTATCGtaaatcaatacaaaatcatttactgcaacaacatcatttgGAATCATTAATTGATGATAATAGCCAAACAGCACTTGGGGATAATGAGAATTCTACTTTTAGTATTGGCGGCGGTGGCGGCGGCGGTGAGGACCTAGACGATTCTAACTTGGGTAGTGGCCGGACACGCGGTGGTGAAGATAAATTTGAACAACACATTGATTATATATGTCCACAGTGTGGCAAGGAAttctttgaaaagaaattatggCGTAATCATGTTATGAAATCGCATCGTATGAATGACTTAAGCACTTTGAATTTTAAAGTCATCAGTGATCGCCAATTGATGTGTAACGAATGTTGTAAGGTTATAACAAATGCTTATGGCATACAAAATGCCCAACAGCATCGCATTACTCATTTGCCGCACAAGGCATTCGCTCGTTGTCGAATATGTCGTAAATCCTATACTGATCGAAAAGGCTTAGTTAAGCATATAATAACAAGACATCGTATTGGTTTTGGTGGCGATGAAAGTTTTAATGCCCAAACTTATCAGCCAGGTGTTGTTGGTAATGGTGGACGTGGTGTACCAAAAGATTTGTTACCAAAAccagaatcatcatcaacatcaacagcagcatcatcatcatcatcatccgcTGTTGTCAAAGTATTGAAAATTGAGCCACGCAAACAAATTGTAACAGTTAAGAATCAAATCTATGAAATTGTCTATTTGGAAGAGGACGATGCTGATTATATTGGCATAgcaaatgataatttttatgataCTGGCGATGAGAATACACTATTTGGAGATAGTATCATGGGTGGAGACGATGACTTTGATATTGGCAACAGTAGTcgtgcttctgctgctgctgctgttgctcctcctcctcctcctgctgctgctgcttcttctACTCCCTCAAGATTTAAATGCGTTGATTGTGGTTCATTATTTTCCACGCCACTTGCTCTTAAACAGCATATACACAAAGAGCATGACTTCCAAGAGTTCAATAGCAATTCAGCCAATCAACAAGATATACAAGATACTCCTAGTAcagtaaaatcaaaaacaaaagatgcAGATGATTCAACCAGTGCCACTGCTGGAACTAATAATGTTGCTGaaagtaatttcattttcatatgcCCGAAATGTGGTAAGGAGTATGCAACACAATTTGATTGGCGACGCCACATAAATGAAGTTCACAATTTCGATAAGCGTCATTTCCTTAATATGCGTCAAATTGACAAATTCCGCTACAAATGCACACAATGTCAGGATATTGTTTGTAATCCAAAACTGAAAGGATTGCAGGATCATCATTTCCGCCATTTACCTTACagattatatttgaaatgtttgGTTTGTGGCACATGCTATAATCATAAGCCAAATATGGTTAGTCACCTGCGTACACGTCATAATATTGTCGATCCAGCCGATCTTCTCGATTATTCGCCAAATCCGCGTCCATTGACGTCAACAACAGGAGCAGGTGGTGCCACACCCGACCGTCAACTGACTAAACGTTATCTAGATAATGCTGTACCACATCGACCACCCGGACTGAATACCATTGAGGATAATATATCATATCACAATGCTGTTGATTTGGATTTCATAACATACTATTGTCCCAAATGCAATCAGAACTTTGATTCGCATGCCTTTTGGCGTAAACACATTGTCGAACAACATAACTACAATAGTCGTGAGGGCCTTAATTTTCGTCAAATCGATAATCATCATTTCTTGTGCCTGGAATGTTACATACGGGTTACTGTCACACATACCAAGGGTGCCATCGGTCAATTGCAATCGCATAAATTCCGTCATTTGCCGTATCGTTCCTTCAAATGTCTCACTTGTAATGGTGAATTTGTAAggaaacaaatgtttttcaaacatttaaaCCGGGAAACAAACCGTTGCGACACCGTCATTagttcatcaacatcaacatcatcatcagcaacaaataatgacaaagttcaaaatgataataaaaacaaacatttattggAGCCGCAAGATGACGATGAACAAAATGAATCAGATAATaatgatactgatgatgataatgataatattgatgaagaTGCTGACAAtgataaaacaaattcaaatgataagaaaacggcagcagcagcagctttgGATCAAATTGATCCGAGTACTTATAAATTGTTGTGTCCGCAATGTGGTGAAGTGTTTGATACAAAGGGCACATGGCGTGAACATGTCAATATCAAACATGAATTAGGTAAAAAAACCAACTTGAATCTCAATAAAATCACTGAGAATTTGTATCAGTGCCGTGCATGTAATGAGAAATTAAAGACCAATAAATTGCGTGAATTGCAATTACATTGTTTCAAGCATTTACCATATGGTGCCTATATACGTTGCCAACTTTGTAATTTAGCGTATTATGGCTTCAGTGAAATGGCTGCACATTTACGGCAACGTCATCCCAATGCCATGGACACTAATAATGATTGTTATgaggacgatgatgatgataatggcaatggcaataatgataatggcaatggcaatggtgaAATCgaagatgatggtgatggtgaaaTTGAAGGcaccaataacaataacaacgatgTTGATATGGATAATGGTGAGGAGGAGGGTGAAATGGAACTtgacagcaatagcaacagcaacagtagccATTCATTTATGCCTCCAATCCCGCCACATTTgcttgatgttgatgatattgaCTTCGATGAACAATATCTTTTAGGGTAG
- Protein Sequence
- MENMDLWNMFSTNFVEGDATSINDKLPENNDEQTNNNANGNGSNVHHRVKQEILDDDNERGDDDNGVGVGDGDDDDDGNGDGDGANEENEENLLDDDSDMLMVMDTTNDHQTQSNDSIRRNPRRGAIEPDDDVIFNFDLRPSVATMDPHPQRPSGARLPPSQINPTDRLGRPINYELGVIYICPACGSEFPVQDKWKAHMNTKHEYNTRQGLNFVRVDKLYHRCLECRKNIAMHSMENLLKHKFTHLPHRCVKCAFCLRQYKYRQDLMVHLRTQHSEDVIQLMKENGNGNGLRHNSSSSSSKYYSQSTRSSTTAFGGSKNDNSGSGRLAILNVKENAVDMFEADDSNIEVRNEPEMDDEDYEAMAGNSFNIRAMFDDDMSRSSSHSTLPNGKRLRDNGTNSSLADVSTYNNIDAGAAAAAGVCASAVSRPGSKDEVCEDYIHYICPQCGTECETHAQWSQHIEFVHDFTSQRGLNFKPLNAQQSQCLDCNRLVEPNNIKALQSHKFIHLPHNEWMRCKLCYKGFKYRKSIQNHLLQQHHLESLIDDNSQTALGDNENSTFSIGGGGGGGEDLDDSNLGSGRTRGGEDKFEQHIDYICPQCGKEFFEKKLWRNHVMKSHRMNDLSTLNFKVISDRQLMCNECCKVITNAYGIQNAQQHRITHLPHKAFARCRICRKSYTDRKGLVKHIITRHRIGFGGDESFNAQTYQPGVVGNGGRGVPKDLLPKPESSSTSTAASSSSSSAVVKVLKIEPRKQIVTVKNQIYEIVYLEEDDADYIGIANDNFYDTGDENTLFGDSIMGGDDDFDIGNSSRASAAAAVAPPPPPAAAASSTPSRFKCVDCGSLFSTPLALKQHIHKEHDFQEFNSNSANQQDIQDTPSTVKSKTKDADDSTSATAGTNNVAESNFIFICPKCGKEYATQFDWRRHINEVHNFDKRHFLNMRQIDKFRYKCTQCQDIVCNPKLKGLQDHHFRHLPYRLYLKCLVCGTCYNHKPNMVSHLRTRHNIVDPADLLDYSPNPRPLTSTTGAGGATPDRQLTKRYLDNAVPHRPPGLNTIEDNISYHNAVDLDFITYYCPKCNQNFDSHAFWRKHIVEQHNYNSREGLNFRQIDNHHFLCLECYIRVTVTHTKGAIGQLQSHKFRHLPYRSFKCLTCNGEFVRKQMFFKHLNRETNRCDTVISSSTSTSSSATNNDKVQNDNKNKHLLEPQDDDEQNESDNNDTDDDNDNIDEDADNDKTNSNDKKTAAAAALDQIDPSTYKLLCPQCGEVFDTKGTWREHVNIKHELGKKTNLNLNKITENLYQCRACNEKLKTNKLRELQLHCFKHLPYGAYIRCQLCNLAYYGFSEMAAHLRQRHPNAMDTNNDCYEDDDDDNGNGNNDNGNGNGEIEDDGDGEIEGTNNNNNDVDMDNGEEEGEMELDSNSNSNSSHSFMPPIPPHLLDVDDIDFDEQYLLG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00063059;
- 90% Identity
- -
- 80% Identity
- -