Amar009840.1
Basic Information
- Insect
- Amiota mariae
- Gene Symbol
- -
- Assembly
- GCA_035041805.1
- Location
- JAWNKV010000325.1:3103965-3106667[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.00046 0.059 14.8 3.9 1 23 161 183 161 183 0.98 2 14 3.9e-06 0.00051 21.3 3.8 2 23 191 212 190 212 0.97 3 14 3.4 4.4e+02 2.6 0.5 3 23 250 270 248 270 0.94 4 14 0.0091 1.2 10.7 3.5 1 23 354 377 354 377 0.96 5 14 0.0077 0.99 10.9 5.1 1 23 414 436 414 436 0.97 6 14 8.6e-07 0.00011 23.4 0.5 1 23 447 470 447 470 0.98 7 14 0.00089 0.12 13.9 3.3 3 23 479 499 478 499 0.98 8 14 0.17 22 6.7 1.3 3 23 527 548 526 548 0.93 9 14 5.6 7.3e+02 1.9 3.0 1 23 594 617 594 617 0.96 10 14 0.42 55 5.5 2.1 1 23 654 677 654 677 0.96 11 14 8.9e-05 0.011 17.0 0.9 1 23 700 723 700 723 0.95 12 14 0.0019 0.25 12.8 0.8 1 23 737 759 737 759 0.96 13 14 7.1e-06 0.00092 20.5 3.1 1 23 765 787 765 787 0.99 14 14 3.9e-05 0.005 18.2 2.0 1 21 793 813 793 814 0.92
Sequence Information
- Coding Sequence
- ATGAAGACTGAAGTGTGTCGAACTTGCAATGGAGAAAATATTGTTCCTCAATATGAACTCATATCAACAATTGATACTTTCCCAGGGAAACGattattagatattttatttgaattgtcTGGCATTGATGCAAAAATGGATCAAATAGAATTGATGCCACAGCATCTTTGCGAACTATGcgtaacaaaattaataaatgcatATGATTTTGTGGTGCAAGCACGCCAGACAAACAATCATTTTCTTGCGGTAATTGAAGAAGCTGAGTCTTTAGAGAAATCTACAACAATTACCGACTGTTTACAAGAAATACCATTGATTTTATGCCCAGAAGAAGCTGAAGAAAACATTGTTTTATCTCAAATTgtggaagaagaagaagaagtcaCAGAAACACCAAATATAAAGGATCCTTTAGTGGAATGTAAAGGCAAACAACAAaccagaaaatataaaaataaatcaaccgAAGATAAGCTATTTAAATGTAATCAATGCAGCAAATCCTTTCATTGGCCACAAAACCTCAAGCTTCACATGCGTCAACACACTAATGAAGATGATTGGTTATCTTGTCCACACTGCAATCGGAAATTTTATCGTAATGATTCTCTACGCTCACATCTTAAGACACACGGAGATCCACAAAAACGTAATTACACATGGGATACTGAAAAAAGGCGCAATATGAAAGCTAAATCTATCGATCTTAACTTGTGTAAACCGAATGGTTGTAAATTGATATTATGCATGATTTGTCaacagaattttttaaaaatcaatgatttgCGTTATCACTTGAATAATCATCCCGCTGTTCTTAACGAACAGTGTATGTCACTTGCTGAGAACCTTTGCtttgataataatgaaatgtcAAAAGATCAATTTATAGAAAGCATACGAAATGACATGGAAAGTGGTAAGCATTCGTTATTTTGTTCCATAACTAATCAAGCGGGTTATGAGCTAAGCCTTGATAGCTCAGATACAGATAGTGAATCCGATGATATGACTACAACGGAACAGGATAAGGAtgccttaaaaaaaaacataaaatacactTGTGAACTTTGTGAGGCGAATTATCACCGAAAGTATCAACTATTccagcatcaacaacagcaacacaaatGGCTTGATGCGCCGCACGTATGCTCTCGTTGTGATGGACGATTCGTGTGTAAGCAATTActtgatcatcatcaaaaatCACAATGTAAAAATCCACAAAAGCGTTTCATTTGTCATAAGTGTCCATTGAGATTTAATTGGAAACACAActtaaaaacacatttaaaagAACACGGTGATCCTGTCAATAACCAATCCGGCTTTTTTGAATGTACTGAATGTAAACGCATTTTTGTGGATCAAAAAGGACTAACGGTACACATGAGAACGATGCATGGTGAAGAATCAAATTTCTTGCTATGTCAATGGTGTGAACGAAAATTCTATCGACGCGATTGTTTAGTTAAACATATGCTGCGTCAtggaattaaagaaaaagatgTGCCACAAGCTGAAAATTTCATGGCAGCCATTGCTTCAGCAAATGGTCCAAAATCTATTCtatgtaaaatttgtaatacaaattttaatagtaTTAAAGAATTACGCTTTCATATCAAGGATAAGCATTATGGCAACAAATCAGCTTTAAATTATTCCATAACAAATTCAGATGGTTATGAATTGCATATTGAAGATTCAGATacgaatgatgatgatagtgacgGTGATGACGATAACATTGAATGTAATCGACCATTGAAATACACATGTGATTTATGtaaaatgcaacaacataGAAAATATGAAACGATGCAACATCAGCGTATCATTCATCGTTTTGACAAATACCCAAACCAATGTGAGAAATGCGTTTTTAAATGTATATCCAAGGATATACTTGATTATCATAAACGTACGCAATGCTTTAACACCGAAAAGTGTTACCAATGCGAAATATGTTGTTACAAATTTATGTGGCAAGAAAATCTAGAATTGCATCAAAAACTACAACATTCGATCATACATacagaaaaattgaatatggAAAAGGAAGAGACAATGAAACCTGCTGGCCCCATGTTTGTTTGTCCACACTGTGATAAAATGTATTATGTTAAAGGGCGTCTTAATAATCATATTAAAGATGTACACATTGATGGTGATCGAAAAAAGAAAGAGGCTCTTAAGAAATATCTATGTTCGCTTTGTGGTTTCCAAACAAGTGAAAAATCGAAATTAACCATTCACACACGGGTGCACACTGGCGAAAAACCTTACAAATGTGATTTTTGTGACAAAAGCTTCGCAAGACGTTATCAATTCGATACTCATCGTCGGATACACACTGGCGAAAAACCTTTTGATTGCACTGAGTGCAACAAAAGCTTCACACGAAGCGATCGACTACGTAAACATTTTCAACGATTACGACCAAAGGAAATCATTGATGATTGA
- Protein Sequence
- MKTEVCRTCNGENIVPQYELISTIDTFPGKRLLDILFELSGIDAKMDQIELMPQHLCELCVTKLINAYDFVVQARQTNNHFLAVIEEAESLEKSTTITDCLQEIPLILCPEEAEENIVLSQIVEEEEEVTETPNIKDPLVECKGKQQTRKYKNKSTEDKLFKCNQCSKSFHWPQNLKLHMRQHTNEDDWLSCPHCNRKFYRNDSLRSHLKTHGDPQKRNYTWDTEKRRNMKAKSIDLNLCKPNGCKLILCMICQQNFLKINDLRYHLNNHPAVLNEQCMSLAENLCFDNNEMSKDQFIESIRNDMESGKHSLFCSITNQAGYELSLDSSDTDSESDDMTTTEQDKDALKKNIKYTCELCEANYHRKYQLFQHQQQQHKWLDAPHVCSRCDGRFVCKQLLDHHQKSQCKNPQKRFICHKCPLRFNWKHNLKTHLKEHGDPVNNQSGFFECTECKRIFVDQKGLTVHMRTMHGEESNFLLCQWCERKFYRRDCLVKHMLRHGIKEKDVPQAENFMAAIASANGPKSILCKICNTNFNSIKELRFHIKDKHYGNKSALNYSITNSDGYELHIEDSDTNDDDSDGDDDNIECNRPLKYTCDLCKMQQHRKYETMQHQRIIHRFDKYPNQCEKCVFKCISKDILDYHKRTQCFNTEKCYQCEICCYKFMWQENLELHQKLQHSIIHTEKLNMEKEETMKPAGPMFVCPHCDKMYYVKGRLNNHIKDVHIDGDRKKKEALKKYLCSLCGFQTSEKSKLTIHTRVHTGEKPYKCDFCDKSFARRYQFDTHRRIHTGEKPFDCTECNKSFTRSDRLRKHFQRLRPKEIIDD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00061359;
- 90% Identity
- -
- 80% Identity
- -