Amar001625.1
Basic Information
- Insect
- Amiota mariae
- Gene Symbol
- -
- Assembly
- GCA_035041805.1
- Location
- JAWNKV010000149.1:676972-684536[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.29 38 6.0 2.1 1 23 241 267 241 267 0.90 2 13 0.0021 0.28 12.7 0.1 1 23 273 296 273 296 0.97 3 13 2.4e-05 0.003 18.8 2.7 1 23 301 324 301 324 0.95 4 13 4.7e-05 0.0061 17.9 3.3 1 23 329 351 329 351 0.98 5 13 0.038 4.9 8.8 4.9 2 23 358 379 357 379 0.94 6 13 0.00016 0.021 16.2 1.7 2 23 388 410 388 410 0.95 7 13 0.0013 0.17 13.4 0.3 1 23 416 439 416 439 0.98 8 13 0.00062 0.08 14.4 0.4 2 23 450 472 449 472 0.96 9 13 0.00035 0.045 15.2 0.1 2 23 503 524 502 524 0.95 10 13 2.3e-05 0.0029 18.9 3.5 1 23 531 553 531 553 0.96 11 13 0.00029 0.038 15.4 0.2 3 23 561 581 560 581 0.97 12 13 0.016 2 10.0 1.2 1 23 588 610 588 610 0.98 13 13 0.38 50 5.6 5.8 1 23 616 639 616 639 0.96
Sequence Information
- Coding Sequence
- ATGGAAACTTGTCGTACATGTGCAAGGTGGGATTTTGAAAATGGCAACAATTGGCTGGATCTTTTTCATCCAACACGTTGGCAAAGTGAAATTGCACAAATACGTTTGGAGTTTGTCAACTGGAAAATAAAGATTTCATCCAATGATGGCTTACCACAAAAAATATGCTCCGATTGTTTTACAAAGTTTTGCacaatttttacatttcgcTTATCCTGCCAGGATGCCCAATTAAGGCTGagtaatatttttgataaaatcgAAACAGGAACCttagatgatgaagaaaatgagGGAAATgctatacaaaataatgagaAAGTTGTTcttcatcatgatgatgatgatgaatttgttGATTATGCTAATGAAAGgatgatttcattaaaatataataataataataataatgaagagcaacaacaacaacaaccaataacaacaaaagaaattcaacaaattgatgaatcaaaatcaatgccACCAACTAAAGATGAACTTCAATTGGGTCTTACTTTGGCTTTTGCCCCCGAAGAACTTAttatagaagaagatgaatatgaccaatataataataaaaataataataataatattgaaaatgaaattaaaaattcattgcaaTATCAAGTTCAGCAataccatgatgatgatgatgatgatgatgatgtagatggcaacaatattattagttCATCGTTTCTAATGGACAATATAAGTTATTCATGtgaattttgctttaaatctaaacaaaaatttgatacTCAAGATTTACTCTTAAAACATATAACCAGTTTACAtgatcaacaacaaccatataCTTGTCCTGAATGTAATGTTGGCTTTCAGGATGCTGCCTCTCGGACAGTTCACATTAAGAATGATCACGTTGAGAAACATTATGCATGCAATGTttgtgataaaaaatatagcgATCGTTTTAATCTACGTCATCATGTCGAGAAATATCACAGTGAAACAGATTTTGAGTGTAAATTGTGTGAAAAGCGTTTCTTTACACGGAAAAGTCTTAATTATCATATGAAATGGCATAATCCGGAGAGACAATTAAAGTGCACCTATTGCGATCGTTTGTTCATCAATCAAAGACATCTCAAGTGTCATGAGGCCACGCATACAGGAATCGGAAGACGCAAtgaatattgtagtttttgtggCAAAGCTTTCATACATCTGAAGACGCTACGTTGGCATATTTATCGGCAACATGGAGGCGAGAAGCCCTTCAAATGCGGCAATTGCACAGAAGTTTTTGCCTCATATGTAGAGAAACGCATACACATGCTAACCGAACATAGAGGTAATTTAACGGCGATTGAACGTAGTGAATGTATGATTTGCCGTGAACGCTTTAATACTGAAGAGCAGCTAAGTCTGCATATGCAATCATTGCATTTACAACGTGTTGGGGTTCATCAACCGctcatagaaaataataaacggGTTCTGCAACAGAAACGTGAAAAACAATATTCTGGACTTCTACAGTGTGATGCTTGTGGTCAACGTTTCAATATGAAATCGGCCTTAGAACGTCATGCAGCTGTCCACTCAACTGAAGGGCGACCACATGCATGTTCACAGTGTTCGAAACGCTTTAAGCGTGCACAGGACATGAAGTGGCATATGAAAACTCATGCTgctgaaaaatcaaatatttgtgATGTTTGTGGCAAAGGATTTGCCTTGAAATATGTGCTTACGCAACATAAACGTAGCCATGAAGTTCTCGAAAAGAACTTCAAATGCTTAACATGTGGTCGGGCATATCTTTTTGAGAAATCCTTGCGTCTGCATGAGCGAACGCATACTGGAAAAACTTTCTATAAATGTGATTTCTGTAGTGAACGTTTTGTTACacatattaaactaaaatGTCATTTGCAGAAgattcattatcatcataatgatggcagcacaaataatttaaataaaatgttaccTTTGGATGATCTGATCAATATTGTGATGACTTAA
- Protein Sequence
- METCRTCARWDFENGNNWLDLFHPTRWQSEIAQIRLEFVNWKIKISSNDGLPQKICSDCFTKFCTIFTFRLSCQDAQLRLSNIFDKIETGTLDDEENEGNAIQNNEKVVLHHDDDDEFVDYANERMISLKYNNNNNNEEQQQQQPITTKEIQQIDESKSMPPTKDELQLGLTLAFAPEELIIEEDEYDQYNNKNNNNNIENEIKNSLQYQVQQYHDDDDDDDDVDGNNIISSSFLMDNISYSCEFCFKSKQKFDTQDLLLKHITSLHDQQQPYTCPECNVGFQDAASRTVHIKNDHVEKHYACNVCDKKYSDRFNLRHHVEKYHSETDFECKLCEKRFFTRKSLNYHMKWHNPERQLKCTYCDRLFINQRHLKCHEATHTGIGRRNEYCSFCGKAFIHLKTLRWHIYRQHGGEKPFKCGNCTEVFASYVEKRIHMLTEHRGNLTAIERSECMICRERFNTEEQLSLHMQSLHLQRVGVHQPLIENNKRVLQQKREKQYSGLLQCDACGQRFNMKSALERHAAVHSTEGRPHACSQCSKRFKRAQDMKWHMKTHAAEKSNICDVCGKGFALKYVLTQHKRSHEVLEKNFKCLTCGRAYLFEKSLRLHERTHTGKTFYKCDFCSERFVTHIKLKCHLQKIHYHHNDGSTNNLNKMLPLDDLINIVMT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00063007;
- 90% Identity
- -
- 80% Identity
- -