Basic Information

Insect: Amiota mariae
Gene Symbol: salm
Assembly: GCA_035041805.1
Location: JAWNKV010000370.1:4684197-4691917[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 2.6e-06 0.00034 21.8 1.7 1 23 368 390 368 390 0.98

2 8 2.9e-06 0.00038 21.7 1.7 1 23 396 418 396 418 0.98

3 8 2.5 3.3e+02 3.0 2.5 5 23 692 710 689 710 0.84

4 8 3.8e-08 5e-06 27.6 0.2 1 23 716 738 716 738 0.98

5 8 0.0012 0.15 13.5 0.9 1 23 748 770 748 770 0.98

6 8 0.0099 1.3 10.6 0.1 1 23 980 1003 980 1003 0.95

7 8 1.3e-05 0.0016 19.7 5.0 1 23 1182 1204 1182 1204 0.96

8 8 1e-07 1.3e-05 26.3 0.7 1 23 1210 1232 1210 1232 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	2.6e-06	0.00034	21.8	1.7	1	23	368	390	368	390	0.98
2	8	2.9e-06	0.00038	21.7	1.7	1	23	396	418	396	418	0.98
3	8	2.5	3.3e+02	3.0	2.5	5	23	692	710	689	710	0.84
4	8	3.8e-08	5e-06	27.6	0.2	1	23	716	738	716	738	0.98
5	8	0.0012	0.15	13.5	0.9	1	23	748	770	748	770	0.98
6	8	0.0099	1.3	10.6	0.1	1	23	980	1003	980	1003	0.95
7	8	1.3e-05	0.0016	19.7	5.0	1	23	1182	1204	1182	1204	0.96
8	8	1e-07	1.3e-05	26.3	0.7	1	23	1210	1232	1210	1232	0.98

Sequence Information

Coding Sequence: ATGTGTTCAATATTTCATAATCGGATCAATTACCGAGGGCCGCGTAGCAGTTCGAATGGTAGCAGTAATGATGGTGGTGATCCGAGCGTGGGTGTACTTTCCAAAGAATTGGATGCCGATCGAAATAATAATAGTGGCAATGGTAATGTGGAAGATGTTCAAGCAGAGGAGGATGAAGAGCGAAAACGCGTTAAAACACCATTGCGAAAACCAGGTAATAGCGATTATGAGACGCTGGGCGATGAAGAAGGTGGAGGTGAAGGGGATGATATGGCGGAGAACAGCAACGAGGCGTTGGATTTATCGGTGATCCCTGGTCGGTTGCCGCATAGTGGGCATGTTGCCCTAGAAGCTTTACAACATACCAAAGTGGCAGTGGCTCAATTTGCGGCGACCGCATTGGCAAATAGTCAGTATTACGGTGAGTCTGGGCCGGGTGCCAGTGATATGGCAATGGTGCAATCGACTATATTCAATGTGCAAAGGCAGCATCTGATGCAGTTGCAACTGATTCAACATTTGCAGAGTCAGTTGAAGCGTGCGGGTAGCAGTTTAAGGCATGAGGATGTGCATCCTGAGGACGAAGAAGAACAAGGGTCTGAGAATGAACATGAGCTAACGGAAGAACAAAGTTCCCAAGATAAACTGTCTACTGAATTTGTAAGCAAAGGGCCAGagcaagaagaaaataaagttgtGGTCTCGAATCTTAAGCAGGAACAACCAGAAAAGCCCTTAAAAGCGACATGCGAGGTAATGATAAGtgaaaacaaagagaaacagATAAAATCGACGACTgctgaaaaacaaaactttaagaCTGACACTAGAGCAGAATTGGAAGAGTGCAATCGAAGTGGAATGAAACAGGACATAAGCTACCAGCCACTCATGTGTGACATAAGCTCATCTCTGGCCTCAAGCATCATAACGAACCATGATCCGCCACCAGCGCCAAATGAACCAAATTGTCTAGAGATGCTGCAACGACGGACAGAAGAAGTACTTGATTCAGCCTCGCAAAGTCTGCATGCCTCACAATTGCAAGACGAGTACGAATACACGCAAAAGGATGCACAAGCTCGAGGTGAGATCTTCAAGCATCGATGTAAATATTGTGGGAAAATTTTTGGCTCTTATTCGGCGCTTCAGATACATTTGCGTTCGCATACTGGCGAGCGTCCCTTCCAGTGCAATGTTTGCGGTAGCAAGTTCACGACAAAGGGTAATCTTAAAGTGCATTACCAGCGACATACGCAAATATTTCCTCCAATGTTGCTGCCACCAGGAGTTAATGGGCCACCGAGCGACGGCTTTGTGGGCTATCCAGTAACTGGAATACCACCACCGCTGCCTccacctccacctccaccaccaccaccaccacaattAACGCCGTTTCCGCCACCGCCTCCGACAATACCATTGCGATATGAAGCACCTCCACAGATACCGCGAAGAATTGCTATTGACCCTGCAACACATGAAGAAATCAttgaagaagaggaggagttAGAGCAAAGAACTAAAGACAAGGAGTCACTCGTAGAAGAAGAGGAGGtagaaaacttaaataattgTGCTGAAGATCTCACTAAACCAACTACTCTTATCAATATCACGACACCAACAACGACCAACAGCGGGGACAGTTCAACGACGAAATCACCTAAGCCTGTAGCACCAATAGTGCTGCCTCCACCTTCTAGTGAATCCGCGCAAgacaaaaatgttgaaaagcCTATAAATTTACCTGCACCCAAACGTAATGGTAATGTTAGAAAACGCAACTCAAGTGCTGGCACACCACCCAGTGATAATAAGAATCGTTTATTACCAGATGAACGGGAACCAGTTGAGCACATCTCAAAACTACTGCGTCGTTCCGCGTCTAGTCGTAGTGCACCTAATTTCGGAGATACATACGGTGAttattcatttacaaaaatggAACGTGTGATTGATAGATCCTGGGAGGATCTCATTGAAATCGACCGAACATCGGAGACCTCAAAATTGCAACAACTTGTCGATAATATTGAGAATAAACTAACCGATCCGAATCAATGCATCTTCTGTCAAAAGGTCATGTCCTGCCGTAGTTCTCTACAGATGCATATACGCACGCACACGGGTGAACGACCATTTCGCTGCAAGATTTGTGGCCGGGCTTTTGCTACCAAAGGTAACTTGAAGGCACACATGAGCATACATAAGATAAAGCCACCGATGCGCAGTCAATTTAAGTGCCCCGTGTGCCATCAAAAGTTTTCGAATGGCATCATACTCCAGCAACACATACGTATACATACTATCGATGATGGCGGTGGTGGTCCTGGCACTGGGCCTGGTAATCTACAATTGGTTCCCATGTGTAACGAGTCTACAACATCCACAGAGCATAGCTTACGTTTGAAATCGTTGGAACTCGGTATAGAtgatcaaaattcaaataaatcaatggGTACTTCGGATACTCTTGACTTTTCTACGGTGTCTGATAATTCTGGTCAACGTTCAGAATCATCGCAAGGTGATTTTGATGAATACATGGCAATGGACAGTACCGATGATTCAAGCAGTGCCACACCACTTCCTGATCGTCGTGGTGCCCATAACTCCAGTGTAGACTATGATGACAAATCTGATTTGGATTGTGTTGGTAGtgctgctggtggtggtggtggtggtggtgctggtggcCGTGAAAGCGTTGACTTATCTAATGCTATGGATCTCTCAGCAGCACGTCATTTTGCAATGAATGAAGGCATACCTAAACCATCACTGGAAACGCGGCTGCCCATGCTTGGCATGCCGCCCAACTTTTTGCTAATGGCTGCGGCACGCGAGGAGCTACAAGCACTTGGTGCACATGCCAAATTTCCGTTGTTGCCGTTTGGGCCACTTGGCTTTATGGGACTTCATCCACCTGCACATATCTGTAATTTATGCTTCAAAATTCTACCAAATCCTGCAGCTTTGGAGAATCATCTACAAAGCGAACATACCAAAGATGTGAATACAAATATGAATGTGACGAATCGTTCCAACTGTGATACAGCATCGTCAACATTCAGCGCAAAACTAACACTGAATCCAAATCTCTTTCCGAAGAAGCGTTGTGATGAAGAAGGCGCCTCTTCATTAACaccaacaaatgaaacaaaaaacttaaatcaaaAACTTGAACATGAACACCAACTAGCTGCAGAATGCTATGAGCAGTGCAGAGTAGTGGCGGCTTCACGTGCTGAGGGATCATTAGATGGAGAATTTGTAACCGAAGCAAATGCcatcaaagaagaagaacttgATGCAACGGAGTTGGCAGAAAATGCCACAAGTAGAAATGAAGATGGTTTAGGTCAGTTTCCAGTGGGAGGAATACCGAATCCAATGCATGATTCTGATGCAGAACAATCACTGATGAAAATGCAGCTACATGCGCATCGTTTTCCGGCAAGTCCCTTGGATTTCCAGCAAGCGCTCATGTCTGCGGGTCCACCAACAACGGGCCTAGAACCGCCAGCGAATAACAAACACTTTTGTCATGTCTGTCGACGAAATTTTAGCTCAAGTTCAGCACTGCAAATACACATGAGAACACATACCGGCGATAAGCCCTTTCAGTGTAATGTGTGTCAGAAGGCATTCACAACAAAAGGCAATTTAAAGGTACATATGGGCACACATATGTGGACGAATCCAACATCAAGACGTGGGCGTCGAATGTCCTTAGAGTTGCCCATGCATGCGGGACGTCCAAATGAAACGGATTTCATGCAGCGTCCCAGACCTGAGCTATTCTTTCCATATTTGCCGCCATTCTTTAACGGCCTGCCACATAAGCCCGGTGAATTAAGTCCCGGTAGCGCATTTCCCAATATACCGCCACCACATTTTTCAAATGGTTCTAACCCTACAACACCAAAGTATCCACCTGGACTATTAAGCTTTCCGAATTTCCTTGCACCACCCTATCTGCCACACATGGAGCGTGGTCGTAGTAGTAGCAAATCACCTACACCCTCACAACATGATGAGCCAACAACTCGATCAACACCTGATGATGTCAACGCTTGGCAGAGGAATCCTTTGCTGCGCATCAAAATcgaaaacaatcaaaatgaatGTAATCCAATGGATATAgaaacagaacaacaacaacaacaccaagaTCAAGATGATCAACATGAGAATACGAATATAGATTTAGTGTGTAGTCAAGAGAAGTAG
Protein Sequence: MCSIFHNRINYRGPRSSSNGSSNDGGDPSVGVLSKELDADRNNNSGNGNVEDVQAEEDEERKRVKTPLRKPGNSDYETLGDEEGGGEGDDMAENSNEALDLSVIPGRLPHSGHVALEALQHTKVAVAQFAATALANSQYYGESGPGASDMAMVQSTIFNVQRQHLMQLQLIQHLQSQLKRAGSSLRHEDVHPEDEEEQGSENEHELTEEQSSQDKLSTEFVSKGPEQEENKVVVSNLKQEQPEKPLKATCEVMISENKEKQIKSTTAEKQNFKTDTRAELEECNRSGMKQDISYQPLMCDISSSLASSIITNHDPPPAPNEPNCLEMLQRRTEEVLDSASQSLHASQLQDEYEYTQKDAQARGEIFKHRCKYCGKIFGSYSALQIHLRSHTGERPFQCNVCGSKFTTKGNLKVHYQRHTQIFPPMLLPPGVNGPPSDGFVGYPVTGIPPPLPPPPPPPPPPPQLTPFPPPPPTIPLRYEAPPQIPRRIAIDPATHEEIIEEEEELEQRTKDKESLVEEEEVENLNNCAEDLTKPTTLINITTPTTTNSGDSSTTKSPKPVAPIVLPPPSSESAQDKNVEKPINLPAPKRNGNVRKRNSSAGTPPSDNKNRLLPDEREPVEHISKLLRRSASSRSAPNFGDTYGDYSFTKMERVIDRSWEDLIEIDRTSETSKLQQLVDNIENKLTDPNQCIFCQKVMSCRSSLQMHIRTHTGERPFRCKICGRAFATKGNLKAHMSIHKIKPPMRSQFKCPVCHQKFSNGIILQQHIRIHTIDDGGGGPGTGPGNLQLVPMCNESTTSTEHSLRLKSLELGIDDQNSNKSMGTSDTLDFSTVSDNSGQRSESSQGDFDEYMAMDSTDDSSSATPLPDRRGAHNSSVDYDDKSDLDCVGSAAGGGGGGGAGGRESVDLSNAMDLSAARHFAMNEGIPKPSLETRLPMLGMPPNFLLMAAAREELQALGAHAKFPLLPFGPLGFMGLHPPAHICNLCFKILPNPAALENHLQSEHTKDVNTNMNVTNRSNCDTASSTFSAKLTLNPNLFPKKRCDEEGASSLTPTNETKNLNQKLEHEHQLAAECYEQCRVVAASRAEGSLDGEFVTEANAIKEEELDATELAENATSRNEDGLGQFPVGGIPNPMHDSDAEQSLMKMQLHAHRFPASPLDFQQALMSAGPPTTGLEPPANNKHFCHVCRRNFSSSSALQIHMRTHTGDKPFQCNVCQKAFTTKGNLKVHMGTHMWTNPTSRRGRRMSLELPMHAGRPNETDFMQRPRPELFFPYLPPFFNGLPHKPGELSPGSAFPNIPPPHFSNGSNPTTPKYPPGLLSFPNFLAPPYLPHMERGRSSSKSPTPSQHDEPTTRSTPDDVNAWQRNPLLRIKIENNQNECNPMDIETEQQQQHQDQDDQHENTNIDLVCSQEK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00063037;
90% Identity: iTF_00061360;
80% Identity: -