Amar020861.1
Basic Information
- Insect
- Amiota mariae
- Gene Symbol
- -
- Assembly
- GCA_035041805.1
- Location
- JAWNKV010000425.1:10766746-10770766[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.017 2.2 9.9 1.0 6 23 247 264 247 264 0.99 2 13 3.8e-06 0.0005 21.3 0.7 1 23 270 292 270 292 0.99 3 13 0.00016 0.021 16.2 1.3 1 23 301 323 301 323 0.99 4 13 0.013 1.7 10.2 0.2 2 23 332 354 331 354 0.91 5 13 0.025 3.2 9.3 0.1 3 23 362 382 361 382 0.96 6 13 0.0023 0.3 12.6 0.1 2 23 391 413 390 413 0.95 7 13 0.41 53 5.5 1.0 2 23 422 444 421 444 0.94 8 13 6.8e-06 0.00088 20.5 1.1 1 23 450 472 450 472 0.98 9 13 4.5e-05 0.0059 17.9 4.9 1 23 478 501 478 501 0.98 10 13 1.2 1.5e+02 4.1 0.0 2 23 707 729 706 729 0.92 11 13 0.0012 0.16 13.4 0.4 2 23 737 759 737 759 0.97 12 13 0.0009 0.12 13.9 0.3 1 23 765 788 765 788 0.93 13 13 8.9e-05 0.012 17.0 3.0 1 23 794 817 794 817 0.97
Sequence Information
- Coding Sequence
- ATGTCGTGTGTTCTATgtttaaaagatataaatggCAAATTTAGGCGTATTGAGTTTGCATCAAGTAAAGCAGAAGAGTTGGacattaaaacaattattaatttgcaCTTCTGGCGGCAGatAAAACGTGCTCCGGAGGCATCTGACTATATTTGTAAACCATGTTGGAATTCTCTGTCTACATTccatcaattttatttgactaTTGAAAATGCCCACACGTTGTTGTTTGAAACAGTAACATCAGTTGCAGAATGTTATGTTAACGAATATGAACCAGAGCCGGAGCCAACTATTAGTATTATTAatcaaactgaaaataaagatGAGTTAAATGTTATCACTTCACCACAACCTGCTAAACGAAAGCGTGGTCGCCCAAAACGTCAACCATCTCCAATAGATGTTGAAGTTTTTCCGATGGAAGATGTTtcgaataaaaacaaattgaacgaaattaaaatagaGTTACCAGAAGCAGATCTTACAATAACAGATGCTTTAGAGGAAAACATAAGTCTTGAGAGACTTGTTGAAATTGCATACTCAGATAAAACAGATTCTGAAAATAACAGCAAAGAAACTCGTCGTTTACGCCAGAGAAAATCGAAAAGGACAACCAGGAAAACTGCtctaaaaaagttgaaaaagcCAACTAGAAAAATCAGCCCTACAAATTTTGCAAACCTTTTGGCTCATTATCGTAAAGAGCACAATGAAAGGGgatttatgttatgttgtgGACGGAAGTTTTACAGACGAGAATTGCTTGTAGATCACTTACATACACATAAGAATCCAGACTATTTTAAATGTCAGCAGTGCGGCAAAGTTTTGAGTGATCGTTTCAGCCTTGAATTGCATATGAAAGTGCATGATAGAAAACAAATTGGTCgaatatataaatgtgtagaatgttcaaaaagtttttacaACAAAGTGATTCTCAAGCGACATGTTTTAACACACATACCAGAAGCAGATCGAACTGTTCCCTGCAATCTTTGCGATAAGCaGTTTCCGGATGATTACGCTATGAAACAACACTACTATCTTACACATCTcaataaatatggaaaaatttgtgaagttTGTGGTAAATCGATTCAGGGAAATGAGGCTTTTGATCGGCACATGCAAGAGCATATTATCGGTAAACAATTGCTTTTGAATTGCGATATTTGTGGTGCTTCAATTAGAAACAAATGGGGACTTGCGCGTCATAAGAAAATGATGCACACAGAGGAAAATTTAAAGCCAATGAAATGTCCTATTTGTTCCAAAATATCACCCACTTTTCAGTCACATCGAGCACACATTAAAATTACTCATAAAACAGAACGAAAGCACCAATGTACATTGTGTGATAAAGCCTTTAAATTTCCTAAAGGTTTACGTGAACACATGGCTATGCATACTGGTGAATCACTTTACACGTGTCCACATTGCCCTAGAACCTTTAATTCAAATGCCAATATGCATTCGCATCGAAAGAAAATGCATCGTGAAGAATGGGAAGCAAATCGTCGACGTTGGATTTATGGCGATAAATTTGAAGATATAAACGAAAGTGCATGTACAACTACAAATACAATGATAAAAAGTGCTCCGGAAGCATCTGAATATATTTGTAAACCATGTTGGAATTGTCTGACTACATTCCATCAATTCTATTCGACTATTGAAAATGCCCACATGTTATTGATGAAATCAATAACAGCAGTGGCACAGAGTAATATTAAAGAAGATTCTGAGCCATCTATTAGTTTTATTAACCAAACTGGAATTGAAGATGCACAACCTGCTAAACGTAAACGTGGTCGTCCAAGACGTCAACAACTGCAAGTGactattgataaattttttccGCTATCTAGGAAtagtgaaattaaaatggaacaACCAGAACCAGATCTAACAATGAAAGATGTGTTAGATGAAAACATAAGCCTTGAGCATCTTGTTGAAACTGTATATTCTGATAACTCTGAAGATTCtgaaaacaacagcaaagaaAATCGTCCTTTAAGTCAAAGAAAATCGAAAGGAACAAGCAAGAAAAAACTTCCAAATAAATCGAAGAAAACAAGAGAGAAAATTCCTTCAAAGAAGCTTCTCAATTGTGATATTTGTGGTGCTTCAATAGCAGACCTACCGGAATTTTCGCTTCATAACAAAATGATGCACAGAGGCGTTTATACGAAAAGGACATGTActatttgctttaaaatatcACCCGATTATGACTTACTTCGAAAACACATTAAAAAGGTTCATTGTACAGAACGATCGCACCAATGTTCAGAGTGTGATAAAGcctttaaatttgatttaggCTTACGTgaACACATGGCTGCTATACATACTGGTGAAAAACTTTATATGTGTTCATATTGCTCAAGAACATTTAGTTCAAATGCCAATATGTACTCGCATCGAAAGAAAATGCATCGTGAAGAATGGGAAGCGCGGGATCGTCCACTTGGTTAA
- Protein Sequence
- MSCVLCLKDINGKFRRIEFASSKAEELDIKTIINLHFWRQIKRAPEASDYICKPCWNSLSTFHQFYLTIENAHTLLFETVTSVAECYVNEYEPEPEPTISIINQTENKDELNVITSPQPAKRKRGRPKRQPSPIDVEVFPMEDVSNKNKLNEIKIELPEADLTITDALEENISLERLVEIAYSDKTDSENNSKETRRLRQRKSKRTTRKTALKKLKKPTRKISPTNFANLLAHYRKEHNERGFMLCCGRKFYRRELLVDHLHTHKNPDYFKCQQCGKVLSDRFSLELHMKVHDRKQIGRIYKCVECSKSFYNKVILKRHVLTHIPEADRTVPCNLCDKQFPDDYAMKQHYYLTHLNKYGKICEVCGKSIQGNEAFDRHMQEHIIGKQLLLNCDICGASIRNKWGLARHKKMMHTEENLKPMKCPICSKISPTFQSHRAHIKITHKTERKHQCTLCDKAFKFPKGLREHMAMHTGESLYTCPHCPRTFNSNANMHSHRKKMHREEWEANRRRWIYGDKFEDINESACTTTNTMIKSAPEASEYICKPCWNCLTTFHQFYSTIENAHMLLMKSITAVAQSNIKEDSEPSISFINQTGIEDAQPAKRKRGRPRRQQLQVTIDKFFPLSRNSEIKMEQPEPDLTMKDVLDENISLEHLVETVYSDNSEDSENNSKENRPLSQRKSKGTSKKKLPNKSKKTREKIPSKKLLNCDICGASIADLPEFSLHNKMMHRGVYTKRTCTICFKISPDYDLLRKHIKKVHCTERSHQCSECDKAFKFDLGLREHMAAIHTGEKLYMCSYCSRTFSSNANMYSHRKKMHREEWEARDRPLG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -