Basic Information

Insect: Amiota mariae
Gene Symbol: Clamp
Assembly: GCA_035041805.1
Location: JAWNKV010000370.1:13812114-13814276[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 7 9.3e-06 0.0012 20.1 0.3 1 23 134 156 134 156 0.99

2 7 1e-05 0.0013 20.0 1.1 1 23 383 405 383 405 0.98

3 7 4.6e-06 0.00059 21.1 0.1 1 23 411 433 411 433 0.99

4 7 3.1e-06 0.0004 21.6 3.2 1 23 439 461 439 461 0.99

5 7 1.8e-06 0.00023 22.4 0.4 1 23 467 489 467 489 0.98

6 7 1.5e-06 0.0002 22.6 0.4 1 23 495 517 495 517 0.98

7 7 8.6e-05 0.011 17.1 0.2 1 23 523 545 523 545 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	7	9.3e-06	0.0012	20.1	0.3	1	23	134	156	134	156	0.99
2	7	1e-05	0.0013	20.0	1.1	1	23	383	405	383	405	0.98
3	7	4.6e-06	0.00059	21.1	0.1	1	23	411	433	411	433	0.99
4	7	3.1e-06	0.0004	21.6	3.2	1	23	439	461	439	461	0.99
5	7	1.8e-06	0.00023	22.4	0.4	1	23	467	489	467	489	0.98
6	7	1.5e-06	0.0002	22.6	0.4	1	23	495	517	495	517	0.98
7	7	8.6e-05	0.011	17.1	0.2	1	23	523	545	523	545	0.96

Sequence Information

Coding Sequence: ATGGAAGATCttaccaaaaatataatatttacaacaaaCGCAATTACGGCAAACGGACAACCAACAACTATACAATACCAAGCAGCGGATGGAACAATTCTAAAGCAGCCCAAAATTGAGGGTCAAAAAAACGAGCAACCCACATTTTATTATACCACAAACGGAAACACAGGAACCGTAAATCTGGCGCAACTCGCTACAGACGATAATAAAACGTGCTATATTGCACAGCCCGTTGGCGGGTATAATTATGCACTCGTCAATGGAGTACAGCTTAATCAGGGCGCCCCCATTGGTATCGCCACGGTTGATGCTCAGGGGCGCATACAGATTGTAAATCAGAATAAACCTGTGGCTACAGCAATATCTCCACTGCAAAACACAATTTCTAACATTAGTTTTAAGTGTGATGTTTGTGGAGCCATGTTTCCTCATCTGGCCTTGCTAAACGCACACAAACGAATGCATAACCCGGATGGTAATGAcccacagcaacaacaaaataaccaaCAAGCAGAAACACTTTCTGTGGTCAATGCTCAAGGTCTTGTGCAAACGCAAAACATTATCACAGAGAATGGTCAAATGggtcaaattcaaattgttgcTTCTGATTCTCTGGAACCGGTaatgcaacagcagcaacaacaacaaactggAGGTGGCAATGAGGGAGGCAATCACAAATCCATGCATGACAAGTGTATCAGTTGTGGCAATGCGATTCTTCAGCATTCAAAGCGTAAGGGACGAAAGCAGACACGCTGCGAGTCCTGTATGGATGCcgagcaacagcagcagcagcagcaacaacagcagcaacagcaacagactGCTCAGATATTCGTCGCACCAGATGCGCAAATGCCGAATCAAATGCAAATCATATCCACAACGCCACAGACGCAGGCACAACTACAGCAGATCGTGGCACAACAGACTGGTAGTAATGCTGGTGGCATAAAAAGAGAGATGCCCGCTCCTGCACCAGGACATCATCCAGTGAAGAAGCGCAATACACAACAGTTAACCAAATGCCAGAAGTGTAATGGATCCGGTGTGGTGGCTATTGGCCAGCAAACTCATTCACATCTTCATTCAAAAACAACGGCGAATTCAACAGTGAAAACAGAAAATCCGAAACCGTTTACTTGTACCATTTGTGGTGGTACATTTTCACGTTACTCCAGTTTGTGGTCGCATAAAAAACTACATAGCGGCGAAAAGAACTACAAGTGTACTATTTGTGGATTGGCATTTGCTAAAGCAGTCTATCTAAAGAATCACGCCCGTATCCATACTGGTGAAAAGCCTTACAAATGTCAAACTTGTGGTATGCAATTTTCACAATCGCCACATCTTAAAAATCATGAACGCACACATAGCGGTGAACGTCCATATGTGTGTGAGGTATGTGACAAGGGCTTTGCTCGTCATGCTACATTATGGAACCATCGACGTATACACACAGGCGAAAAACCATACAAATGTGACATTTGTGGTTCAGCTTTCTCGCAGGCGGCACATCTCAAGAATCACGCCAAAGTGCATTCCGGTGAAAAACCTTTTAAATGTGATATATGTTCAGCAGCATTCGCCGATCGTTTTGCGCTAAAGCGTCATCGTGGTATACATCAGAAATATGGCCAGACAGCTCCACGTCAGCCAGCTGTTCAGCAAAGTGAAAATGTTGTCATACACAAACGAGAAATGCCCGATATGGAGGACGAAGCCCAACATGAGGTTATCATATCTGGCTTATAG
Protein Sequence: MEDLTKNIIFTTNAITANGQPTTIQYQAADGTILKQPKIEGQKNEQPTFYYTTNGNTGTVNLAQLATDDNKTCYIAQPVGGYNYALVNGVQLNQGAPIGIATVDAQGRIQIVNQNKPVATAISPLQNTISNISFKCDVCGAMFPHLALLNAHKRMHNPDGNDPQQQQNNQQAETLSVVNAQGLVQTQNIITENGQMGQIQIVASDSLEPVMQQQQQQQTGGGNEGGNHKSMHDKCISCGNAILQHSKRKGRKQTRCESCMDAEQQQQQQQQQQQQQQTAQIFVAPDAQMPNQMQIISTTPQTQAQLQQIVAQQTGSNAGGIKREMPAPAPGHHPVKKRNTQQLTKCQKCNGSGVVAIGQQTHSHLHSKTTANSTVKTENPKPFTCTICGGTFSRYSSLWSHKKLHSGEKNYKCTICGLAFAKAVYLKNHARIHTGEKPYKCQTCGMQFSQSPHLKNHERTHSGERPYVCEVCDKGFARHATLWNHRRIHTGEKPYKCDICGSAFSQAAHLKNHAKVHSGEKPFKCDICSAAFADRFALKRHRGIHQKYGQTAPRQPAVQQSENVVIHKREMPDMEDEAQHEVIISGL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01196160;
90% Identity: iTF_00063015;
80% Identity: -