Amar026585.1
Basic Information
- Insect
- Amiota mariae
- Gene Symbol
- -
- Assembly
- GCA_035041805.1
- Location
- JAWNKV010000667.1:198154-201088[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.076 9.8 7.8 0.1 1 23 113 136 113 136 0.95 2 13 0.00024 0.032 15.6 0.1 2 23 141 163 140 163 0.93 3 13 3.2e-05 0.0042 18.4 4.8 2 23 174 196 173 197 0.95 4 13 0.026 3.4 9.3 9.5 2 23 503 524 503 524 0.97 5 13 1.6e-06 0.0002 22.6 2.6 1 23 530 553 530 553 0.94 6 13 1.4e-05 0.0018 19.6 0.2 1 23 558 581 558 581 0.93 7 13 7.3e-06 0.00095 20.4 3.6 1 23 603 625 603 625 0.96 8 13 8e-05 0.01 17.2 1.5 1 23 630 652 630 652 0.98 9 13 3.6e-05 0.0047 18.3 1.7 1 23 658 680 658 680 0.95 10 13 5.2e-06 0.00067 20.9 0.6 1 23 686 708 686 708 0.98 11 13 1.3e-06 0.00017 22.8 1.7 3 23 716 736 715 736 0.99 12 13 2.7e-08 3.6e-06 28.1 1.1 1 23 742 764 742 764 0.99 13 13 0.039 5 8.7 2.2 1 23 769 792 769 792 0.94
Sequence Information
- Coding Sequence
- atggCACAGGCGACGAAGCTTGACGCAGAGCGGATTTGTCGCGTGTGCCTGCGTGAGCACAATGAACTGTTTCTGATTTATGATGAGGCTCCTGTGGAACAGGGCATGAACATTGTTCAGATCCTAAATGAATGTACGCGTTATACTGTGGAGCGTTTTGATATGATGCCACATCAAATGTGTGCCGGTTGCATTGCGGAGGCACGTGCCGCATACCGCTTCAAGCGAACAGCCGATGAGTCCTACAGGAAACTAGTTAGTATGCTCGGTCGTATACCACGCAAGAATAAGGACAATTGTGTTGATAACGGCACACAGACTGAACAAAGTACTCTGTATCCATGTGAGGTATGCGAGGAGAAGCTCTTCAGCATGGGTGAATTGCGCCAGCACCGCAATGCCGTGCATCAGTCGGAGTTGAAGTGCAAGGTGTGCGGCAAGGTTTACGAACAATTGCGACTATTGCAATTGCATTTGGCACAGGCTCATGATGAACACGGTTCTGTGAGTGCGCACTTACAGTGCAAACAGTGTGAGAGAGTTTTTAGTCGACGCGATCATCTTGTCCGCCACAAGCGTAATGTACATCATCAGCAGATACCGACGCGTTCAAAGCATGAGCAGGAAAGTAAAGTGAAAGCGGAGAAACCACCGGATGGTCTCTCATCACTATTGGAAGAACCAGAAATGATAGTAATGGCAGATGCAACTGATAAGAGCCTTGATAATTACTGGATGAGCAACATGGAATCCGATGATGCAACGGAATTGGGTGGTGCAGGCGGTGATTACCAAACAAATCCAATATCTAGCGATGATGAGGCAAAGCCTGACGACCTTGATATCAATCACAAGCTGTGGGTTGCACTGGAACCAGAAGTGAATATGGATTTGTCCTCATCACAACTAGatgaaaaagatgaaaaaggAACAGAGGAAACcagcaaaaagaaattgaaacgTAAAAGGGCCAcacgcaaaaacaaaagctatAGTGAGGgttacgatgatgatgacaatgttggtaataataatgaaagcaCTGACAATAATgacaacgacgatgacgatgatggtgcATATGATCCGAATAGCGATCATGATCATTCAtccgatgatgacgatgaactATTCGAAAAAACTGCTGACGCAAATATAAAGGATGacataaacatacaaataaagaCCGAACCTTTGGAATTTGAAAGCAACGGaggtggaggaggaggagcCTTAGATACTCTAAGCAACGCCGCAATCTCATTGAAACGCGAGAAATTGGAATTCGAAGAACACCTCAATACATCTGCGGAACCTGTTGATGTGATAGATGGCAACAAATCTAATTCTAATGCAATTGAAGAAGCAACTGCAACTGGTAGCAGCAATGAAAACAGCAAagctaaaacaacaaaagttacTAAACCGAAAGTGGAGATTGTGCGTGAATATTTGCAGAAAAAACGAACACCACGTAAACACCGACGCGACGATAATCCCGAGAATCGCTGCGATCTATGCCAGCGCACATTCTCAAGGCATTGCCATCTTCTACGACACAAACTATCGCATCTAGAACAGAAACCTCATGCCTGTCCGCACTGCCCCAAGACATTCGCACGCAGTGACCATCTGAAGGCACACGTTCTAAGCTTGCATGGCACTCGTGACTTCAAGTGCACGATTTGTGATGCGGCTTTCACTCGTGCCGATGCACTGGAACGCCATAAGGTTAGCAAACACGACGGTGCCGTTCTAGATGGCAGTAGCAGCTCAGCCGCAGGCGGTTTACTAGAAGCTAAGCTACATGCCTGTGAATACTGTGAAAAGAAATTCACCAGCAAAAGTTACTTGCGCAAACACACGCTGATACACACAGATCTGTTGTACGCCTGCAAGAATTGCGATATGACATTCAAGGAGCGCCAACAGTTGCGTGAGCACGAGAAAACTCACACAAGTGAACGCAACTTCCTTTGCTGCATTTGTGGCGATAGCTTTGCACGTAATGATTATCTGCGTGTCCATATGAGACGTCATAATGGTGAGAAGCCCTACAAGTGCAAATATTGTGGCAAAGGATTCCCTCGAGCCACCGATGTCAAGGTGCATGAACGTTATCACACAGGCACTAAGCCAAACTTGTGCACGCTCTGTGGCAAAGGTTTCCATCGCGCCTATAATCTAACAATTCACATGCGAACGCATACGGGCGAGCGCCCATACAAATGCGATCAGTGTCCCAAGAGCTTTACGCAAAGTAACGATCTGAAGGCGCACATACGACGCCATACCGGGGAGCGTTACAAGTGCAATGAATGCGATGCTTGCTTCCTGCAACTCTATGCAATGCGTCACCATGCCCTCAGTGTGCATGGCACTCATATTGAATCGAAAACGGGTCGCTTGCAACGTACTGGACTCTATGATGATCCCTCGTCACAATCACAAATAACAACTGTGTTGGTTGCACCTCAAAACTATGAGGCCACAACGCATCAAGCACaaccgccaccgccaccaccacaaccagtgcaggcaacaacaacaactgccgCTGctacaacgacaacagcaaatctattaaatcagcaacagcagcagcatcaacagtCTTTATCATCTCCACAAGTACATCGCCAGCACTCTCAGGACACAGGACAAAATTATCCAACATCATCGTCTATTGAAACGGTTGTCGTACAGCCAATGACTGCTGCTGCACAATTGGCAGTGCCCGGTCATGAATATTTGGCaccatatatacatattccCAGTGCAATTGGTAAGTTTTAA
- Protein Sequence
- MAQATKLDAERICRVCLREHNELFLIYDEAPVEQGMNIVQILNECTRYTVERFDMMPHQMCAGCIAEARAAYRFKRTADESYRKLVSMLGRIPRKNKDNCVDNGTQTEQSTLYPCEVCEEKLFSMGELRQHRNAVHQSELKCKVCGKVYEQLRLLQLHLAQAHDEHGSVSAHLQCKQCERVFSRRDHLVRHKRNVHHQQIPTRSKHEQESKVKAEKPPDGLSSLLEEPEMIVMADATDKSLDNYWMSNMESDDATELGGAGGDYQTNPISSDDEAKPDDLDINHKLWVALEPEVNMDLSSSQLDEKDEKGTEETSKKKLKRKRATRKNKSYSEGYDDDDNVGNNNESTDNNDNDDDDDGAYDPNSDHDHSSDDDDELFEKTADANIKDDINIQIKTEPLEFESNGGGGGGALDTLSNAAISLKREKLEFEEHLNTSAEPVDVIDGNKSNSNAIEEATATGSSNENSKAKTTKVTKPKVEIVREYLQKKRTPRKHRRDDNPENRCDLCQRTFSRHCHLLRHKLSHLEQKPHACPHCPKTFARSDHLKAHVLSLHGTRDFKCTICDAAFTRADALERHKVSKHDGAVLDGSSSSAAGGLLEAKLHACEYCEKKFTSKSYLRKHTLIHTDLLYACKNCDMTFKERQQLREHEKTHTSERNFLCCICGDSFARNDYLRVHMRRHNGEKPYKCKYCGKGFPRATDVKVHERYHTGTKPNLCTLCGKGFHRAYNLTIHMRTHTGERPYKCDQCPKSFTQSNDLKAHIRRHTGERYKCNECDACFLQLYAMRHHALSVHGTHIESKTGRLQRTGLYDDPSSQSQITTVLVAPQNYEATTHQAQPPPPPPQPVQATTTTAAATTTTANLLNQQQQQHQQSLSSPQVHRQHSQDTGQNYPTSSSIETVVVQPMTAAAQLAVPGHEYLAPYIHIPSAIGKF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00061321;
- 90% Identity
- -
- 80% Identity
- -