Amar010758.1
Basic Information
- Insect
- Amiota mariae
- Gene Symbol
- -
- Assembly
- GCA_035041805.1
- Location
- JAWNKV010000326.1:5409189-5418554[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 0.018 2.3 9.8 2.5 1 23 374 396 374 396 0.98 2 23 1.8e-05 0.0023 19.2 0.4 1 23 402 424 402 424 0.97 3 23 1.1 1.4e+02 4.1 2.1 3 23 432 452 431 452 0.97 4 23 8e-06 0.001 20.3 1.3 1 23 458 480 458 480 0.99 5 23 8.7e-05 0.011 17.1 2.0 1 23 720 742 720 742 0.98 6 23 5.6e-06 0.00073 20.8 0.3 1 23 748 770 748 770 0.98 7 23 0.034 4.4 8.9 3.3 1 23 776 798 776 798 0.97 8 23 1.6e-05 0.0021 19.4 2.0 1 23 804 826 804 826 0.98 9 23 0.00038 0.049 15.1 4.4 1 23 832 856 832 856 0.91 10 23 8.8e-05 0.011 17.0 1.6 1 23 1002 1024 1002 1024 0.98 11 23 1.8e-05 0.0023 19.2 0.3 1 23 1030 1052 1030 1052 0.97 12 23 0.0086 1.1 10.8 2.4 1 23 1058 1080 1058 1080 0.97 13 23 3.1e-06 0.0004 21.6 1.9 1 23 1086 1108 1086 1108 0.98 14 23 0.00087 0.11 13.9 1.7 1 23 1363 1385 1363 1385 0.98 15 23 1.8e-05 0.0023 19.2 0.7 1 23 1391 1413 1391 1413 0.97 16 23 1.1 1.4e+02 4.2 1.9 3 23 1421 1441 1420 1441 0.97 17 23 1.7e-06 0.00022 22.4 1.3 1 23 1447 1469 1447 1469 0.99 18 23 0.00022 0.029 15.8 3.4 1 23 1475 1499 1475 1499 0.91 19 23 0.00034 0.043 15.2 0.7 1 23 1516 1538 1516 1538 0.97 20 23 0.0002 0.026 15.9 2.3 1 23 1544 1566 1544 1566 0.98 21 23 0.19 25 6.5 1.1 1 23 1572 1594 1572 1594 0.97 22 23 3.2e-05 0.0042 18.4 1.3 2 23 1601 1622 1600 1622 0.98 23 23 0.00038 0.049 15.0 4.8 1 22 1628 1649 1628 1652 0.90
Sequence Information
- Coding Sequence
- atgAGGACAAAAGTTAAATTCAGTGTAGACGACgaggaaaaaattataaatttcgtTAAATTTAACGAAATTTTATATGAcatgagaaacaaaaaatttcgtGATACCGAAGCCAAAAATCGTTTGTGGTTCCAATTAGCAAACGAATTGAACATGGATGTCGAAGTGGTGAAAAAGAAATGGCAAACGATGAGAGATTATTTTGTTCGAtccaagaaaaagaaaacaactggCTCAGCAGCATCGCCGTTGTCGAGAAGGGAGAAATCACTTTCGTTTTTGCTTCAAACAACGGTGTTGAATAGATCATCGCTATCATTGGTAACAGCCGCACTTACAGAGACACAATCACCTGTTGATGAAAGTGTTGACACATATTCGAATGAGGAAGATTTGGATAGCTTCGATGATTCTGTTACATCAGTTTCTATTCCGCAAACACCAAACTCAATGAGCAGAAGTGTTTCAAATAATGATGTATCGGAGACGAATGAAATCCTAACAGAATTTTTGCCCCATCAGCCAAAACCTTCAGATTTCATGCCAGAAATTCCGAGTGATGACATCCAACAATTTTTCGATTCGATGGCATCAACAGTTCGCAAATTTTCACCGATACAAATTGCtcgaattaaaaacaaaattgctcATATTGTTGGTGAAGAAGAAATCGCTTGGGCTGAGAAATCATTTGAATTCCGGTTGGAGTGCAGGCGTGCACAAACTTTTCTCAATGAAAAGGAAACGCGAATGCAAAAATCAAGAAGACATAAGCAAGCCTCagacaatttcattaaaagttGCACCGAGGTCACTGATGAAGCCATGATACCGATTTCAGCCATGAAAGTTAATAGAAACTCCGATGAAGACAAATCATTTGAAACATGTGATGCTGGGTTAACCAGCAATAATCCTTCTGATAATGACGAGTGGTCGGCAAAAAACAATGAGAGAACAAAAGAATCTTTAAATGCAGAAGAATACTCTAAATTATCAACAGAATTATCAAAGGTTCCAAACGAAACTGACCAAAGAAATGCTGAAAGGAGTCAAACTGAAGAAAGAAGCTGCAAAACAACACcagaaatcaatttttcaaatgcaaaaatagcAAAGTATGTATGCGATATGTGTggacaaacatttaatttgatgTGCTATTTTCAAATGCATGTCAATCGTCACAAAGGAGAGCAAACTTTTGCTTGCGAAATCTGCCCTGAAAAATACTACACTCCGCAAAGTTTAAAGCGTCATATGTTGAAACATGCAGGTGCAAAACCCAATGCCTGTCGGTATTGTCCCCGTCGTTTTCTTGATTACAGCGCAAAACACCGTCATGAACGAATGCACAATAATGATAGACCCTACAAGTGTACATATTGCGGCAAAGCGTTTACATCGAattatatactgaaaaatcatGTACTGACACATACTGGTGAGCGATCATTCAGATCTTGTCGGGTGTGTGCCAAGGAAAATCTTGAGAGTAGCCTCACCATAAACCTTTTTCAGAAGAGTAGTATACAGATATTAATTCAACTTGAGGCAATTGTAGGAATAGAAATAAAGCAGAGACAGGATATGCCAGACTTTATTTGTGCAGACTGTATATTGCGTTTGGAACAAGCATTTGAATTCCGGTTGGAGTGCAGGCGTGCACAAACTACTCTCCGAAAATCTTTTTCTCAAAAGGAAACGCGAACCGAAACAACAAGTAGTCATATTCAAGCCTCAGACAATTCCATTGAAAACTGTTGCACTGACAATAATGTAGAACCAAAAATCTCAACACCATCAACAAGCAGCGAGGTCAATTTGGAAGAAATGATACCGACTTCAGCCATGAAAGTTATTGTAAATTCACTTGAAGATGACAACCAATCAGTTGAAACATTTGATGCTCGGTTAACCAGAAATGATCTTACTGATGCTGACAACTGGTCGCCGGAAAACagtgaagaaaatatgaaaccaccgaaaagaacagaaaaatctttaaatgacGAAGAATTCTCTGAAGTATCAACAGAATCATCAATTGCTGTAAACCAAACTGACCACAGAAATGCTGAAAGgagtaaaatggaaaaaataagcGACAAGACAGAGCCAGGCAACAATTTgtcaaatgatgaaaaaaaagcaaaatatatatgCGAAATATGTGGACAGACATTTACCGTGACGCATTATTTTCAATCGCATATCAATCGCCATAAAGGGGAGAAACCTTTTCCTTGCGAAATATGTCCAGAAAAATTCTATAGTCAGCAAAGTTTAATCCGTCATATGCTGAAGCATGCAGGTGCAAAACCCTTTGCCTGTCACTATTGTTCCCGTCGTTTCCTTGATTCCAGCGCAAAAACGCGTCATGAACGAATGCATACAAATGATAGACCCTTCAAGTGTACATATTGTGTCAAAGCGTTTACCTCGAATTATGTACTCAAAAATCATATACGGCAACATAGTGGTGAGCGCTCATTCAGTTGTGAAAATTGTCAACGATCATTTGTTCATAAGAAAAACCTATTAAAGCATTACGAGACTAAAAGGCATAAAAAAATGGCAGCAACAGTTGATCCTGTTGAATCtgtgaaaattaaaacacaaatcgGTATATCAACTAATTACAACCTAAGACATTTAAAATCACCTTTAGATGAAGTTATGATACCGATTACAGTCATGAAAGAAAATGGACATTCCGATGAAGATGACAACAAATCTTTTGAAACATTTGATGCTCACTTAACCAGCAAAGATGCTTCTAATGATGACAACATGTCGGCAAAAAGGAACGAGAAAAAACTGAAACCagcgaaaagaagaaaaaaaaaattgaatattgaagaAATCTCTAAAGTATCAACGGAATCATCAAagattcaaaagaaaacagaCCATAGAAAAGGTAAAAGGACTATAACTAAAAAAATCGCCAACAAGACAAAACCAAATATCAATTTGTCAAGTGAtgaaaaaatagcaaaatatgTATGCGATATGTGTGGACAAACATTTACCGTGGCCCATTATTTTCAATCTCATGTCAATCGCCACAAAGGGGAGCAAACTTTTGCTTGCGAAGTATGCCCTGAAAAATTCTATAGTCAGCAAAGTTTAATCCGTCATATGCTGAAGCATGCAGGTGCAAAACCATTTGCCTGTCACTATTGTCCCCGTCGTTTCCTTGATTCCAGCGCAAAAACGCGTCATGAACGAATGCATACTAATGATAGACCCTTCAAATGTACATATTGTGGCAAAGGGTTTACCTCGAATTATGTACTCAAAAATCATGTACGGCAACATACTGGTGAACGCCCATTCAGCTACAGTACTTTGAGGATGTCGTCCAGCTCTTGTCGGGTCTGTGCCAAGGAAAATCTAGAGAGTAGCCTCACCATAAACCTTTTTCAGAAGAGTAGTATACAGATATTAATTCAACTTAAGGCAATTGTAGGAATAGAAATAAAGCAGAGGCAGGATATGCCAGACTTTATTTGTGCAGACTGTATATTGCGTTTGGAACAAGCATTTGAATTCCGGATGGAGTGCAGGCAACCAAAAACCTCAATACCATATCCATCAATAGGCACCGTGGTCAATGATATAGTGTATCCCGAAATGGAACTTCAAGAAGATGCAGCAACTGTTGATCCTTTAGAATCtgtgaaaattaaaacagaaatCGATATATCAACTTATTACAACCTAAGACATAAAGAATCAGCTATAGATGAAGCCATGATACCGATTACAGCCATGAAAGAAAGTGGAAATTCCGATGAAGATGACAACAAATCGTTTGAATTATTTGATGCTCATTTAACCAGCAAATATGCTTCTGATGACGACAACTTGTCGGCGAAACACAttgagaaaaaattgaaacgcATTGcgagaagaacaaaaaaatctttaaatatcGAAGACATCTCTAAAGTATCAACGGGATCATCAAAAGTATCAAGCAAAACGGAGCACAGGAAAGGTAAAAggactaaaactaaaaaaataagcagCAATACAAGACCAGACTTCAATTTgtcaaatgatgaaaaaatggcaaaatataTTTGCGAAATGTGTGGACAAACATTTACCGTGGTGCATTATTTTCAATCGCATGTCAATCGCCACAAGGGGGAGCAAACATTTGCTTGCGAAATATGCCCTGAAAAATACTATACTCAGCAAAGTTTAAAGCGTCATATGCTGAAGCATGCAGGTGCACAGCCCAATGCCTGCCGCTACTGTCCCCGTCGTTTCCTTGATTGCAGCGCAAAAGTGCGTCATGAACGTATGCATACAAATGATAGACCctacaaatgtacatattgtGGCAAAGGGTTTACCTCGAATTATGTACTCAAAAATCATGTATTAACACATACTGGTGAGCGCCCATTCAGTTGTGAAATATGTCAACGATCATTTATTCAAAAGAAACATTTGGTGACGCATTACAAGTCTACAActcataaacaaaatgaagaaaaagcaAATGAGaatgATGAAAAATCGGCTAAATTTATTTGTGAACTATGCGGTCAATCTTACAGTGCGCAACACTATCTAGTATCACATATGAATCTTCATAAGGGCATTAATCCTTACGCTTGCGAACTTTGTCCACAAAAATTCCATTCAGAACGCAATCTTAAAAGGCACTTGATGAAGCATGCTGGCTTGAAGCCATATCCTTGTCGTTATTGTGAACGTCGTTTCCTTGATTATTATGCACGTATGCGACATGAACGAGTTCACACAAATGAGCGTCCCTCTAAATGTAACTACTGTGATAAAGCCTTCACCACAAATTacatattgaaaaatcatttattaacaCACACTGGCGAACGTCCATTCAGttgtaAAATCTGTGAGCGAACATTTTCTCAAAAGAAGCATTTGGCAACGCATTTCAAATCCACATTTCATAAGCAGAATGAGAAAAAATCAATACCAAATGTTGCTgtagatatactcgtataa
- Protein Sequence
- MRTKVKFSVDDEEKIINFVKFNEILYDMRNKKFRDTEAKNRLWFQLANELNMDVEVVKKKWQTMRDYFVRSKKKKTTGSAASPLSRREKSLSFLLQTTVLNRSSLSLVTAALTETQSPVDESVDTYSNEEDLDSFDDSVTSVSIPQTPNSMSRSVSNNDVSETNEILTEFLPHQPKPSDFMPEIPSDDIQQFFDSMASTVRKFSPIQIARIKNKIAHIVGEEEIAWAEKSFEFRLECRRAQTFLNEKETRMQKSRRHKQASDNFIKSCTEVTDEAMIPISAMKVNRNSDEDKSFETCDAGLTSNNPSDNDEWSAKNNERTKESLNAEEYSKLSTELSKVPNETDQRNAERSQTEERSCKTTPEINFSNAKIAKYVCDMCGQTFNLMCYFQMHVNRHKGEQTFACEICPEKYYTPQSLKRHMLKHAGAKPNACRYCPRRFLDYSAKHRHERMHNNDRPYKCTYCGKAFTSNYILKNHVLTHTGERSFRSCRVCAKENLESSLTINLFQKSSIQILIQLEAIVGIEIKQRQDMPDFICADCILRLEQAFEFRLECRRAQTTLRKSFSQKETRTETTSSHIQASDNSIENCCTDNNVEPKISTPSTSSEVNLEEMIPTSAMKVIVNSLEDDNQSVETFDARLTRNDLTDADNWSPENSEENMKPPKRTEKSLNDEEFSEVSTESSIAVNQTDHRNAERSKMEKISDKTEPGNNLSNDEKKAKYICEICGQTFTVTHYFQSHINRHKGEKPFPCEICPEKFYSQQSLIRHMLKHAGAKPFACHYCSRRFLDSSAKTRHERMHTNDRPFKCTYCVKAFTSNYVLKNHIRQHSGERSFSCENCQRSFVHKKNLLKHYETKRHKKMAATVDPVESVKIKTQIGISTNYNLRHLKSPLDEVMIPITVMKENGHSDEDDNKSFETFDAHLTSKDASNDDNMSAKRNEKKLKPAKRRKKKLNIEEISKVSTESSKIQKKTDHRKGKRTITKKIANKTKPNINLSSDEKIAKYVCDMCGQTFTVAHYFQSHVNRHKGEQTFACEVCPEKFYSQQSLIRHMLKHAGAKPFACHYCPRRFLDSSAKTRHERMHTNDRPFKCTYCGKGFTSNYVLKNHVRQHTGERPFSYSTLRMSSSSCRVCAKENLESSLTINLFQKSSIQILIQLKAIVGIEIKQRQDMPDFICADCILRLEQAFEFRMECRQPKTSIPYPSIGTVVNDIVYPEMELQEDAATVDPLESVKIKTEIDISTYYNLRHKESAIDEAMIPITAMKESGNSDEDDNKSFELFDAHLTSKYASDDDNLSAKHIEKKLKRIARRTKKSLNIEDISKVSTGSSKVSSKTEHRKGKRTKTKKISSNTRPDFNLSNDEKMAKYICEMCGQTFTVVHYFQSHVNRHKGEQTFACEICPEKYYTQQSLKRHMLKHAGAQPNACRYCPRRFLDCSAKVRHERMHTNDRPYKCTYCGKGFTSNYVLKNHVLTHTGERPFSCEICQRSFIQKKHLVTHYKSTTHKQNEEKANENDEKSAKFICELCGQSYSAQHYLVSHMNLHKGINPYACELCPQKFHSERNLKRHLMKHAGLKPYPCRYCERRFLDYYARMRHERVHTNERPSKCNYCDKAFTTNYILKNHLLTHTGERPFSCKICERTFSQKKHLATHFKSTFHKQNEKKSIPNVAVDILV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -