Amar011255.2
Basic Information
- Insect
- Amiota mariae
- Gene Symbol
- -
- Assembly
- GCA_035041805.1
- Location
- JAWNKV010000332.1:1388518-1390273[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 3.5e-13 1.1e-09 38.7 0.0 3 45 358 400 357 400 0.94 2 3 0.026 83 4.0 0.0 27 37 429 439 425 444 0.89 3 3 2.7e-18 8.6e-15 55.1 0.0 3 41 467 505 465 507 0.92
Sequence Information
- Coding Sequence
- atgaATCACTTAAAATGGATGGGTCACACAGACACCCTTTTAGATATAAATCGTTCCTTACGCGACGAAGCAGAAAGTTGCGAAGTGACTCTTGTTGCCAGAGGTGGTGCTTCAGTACGCGCTCATCGTTTTGTTCTGAGCACTTGCAGCGATTTACTCCGAAATGTTCTCAAGGATGTACCCCATAACACGGAATGCACAATTATGCTACCAGATATTACCAGTTCCCTCTTGGATAGTATGCTTTCGTTTATATATTTGGGTGAGACAACTTTGTCTTCTTCGAGTCTTTCGGAGTTTCTTGAGGCCATCAATTTGTTGGGCATCAAATCTGCCATTAGTTTTGAGTGTAATTCAACCGCCAACTTGAATACGAATTCAGTTGCCAATGCACCAATTTGTGGTGTTGGTAATAATAATGGAATGAATATACCTCTAAAGACAATAACTGGACTACAAATTACACAGGAAgaatttgttgatgatgtcgAAGGTGTTGAGAAAATTGTGGAGGCAAATAATGCCGTCACTGAGCAGCAGATTGCCACCGCTAGAGGCTTAGAGTATCTTGATGTCTACAGTGATCAGGCGAAAATCACCTATTCCATTGAACACATGGCAGGAGCCGGTGGCGGTGGTGAATTTATATTAACAGAAAATGCAAACACTTATACCATAACAGCACCGAATCAAGTAGCCACCGACAAATTAGCAAATACAACAGCCGCTGTGGTAGACAGCAATGATTTAGTAGAAGATGAAACCGAAGTTGTTGACgaagaagaagttgaagatgaTCCAAACATTATCGAAGAAGAGTATAGTGGCGGAGAACCTCTTTTGGAAATGTCCACAACAGATGTTGAAATAAGTGACCCCGTTGATATAACACAAGGACAAATCGATTCTTCTGCCGAAGCTGATCCACAAATGCTGGAAGCAGCAAGGGCTTCTATTAAATTGCGTACAATAAAAGCGAAACGTCAAATTGCTGAACATAAACTAGCAATGGGTCATGCTAGCTTGCCACCAAAACCATCTAAATCCAAAACAAAGAATCCAATAGAAATGGACAACCTCGAAATGGCTGCCCAGGCGGTTCTACATGAGGGATTAAGCTTACAGAAAGCTGCCGATAAGTTTGATTTGTCCAAGACAGTACTCTGGCGGCGCATGCGTAAGGATCCAACATATCAAAGGATTGGTCGTGTAAAACCAGAACTTTCGCTGGCATTTGAACGTTTGAAAAGTGGTGATTCACTTAAGAATATTAGTAAAGATCTTGAAATACCAATGTCTACATTACATCGTCATAAGGTACGGCTTTCGGAAGAGGGTCGCCTGCCGCAGTTTGTGACCTGTCGTCGTCGCGACACAACACCTAAAGATGAACTTCAAGAGAAACTTGCCAAGGCGGTGCATGCATGTGTCCATCAGGGCATGTCACAGAATCATGCAGCCAATGTTTATGAGATACCAAAAAGTACACTTTGGCGTCATCTAAGGCGCCGTGTCGCTGAGGCGGAACAAGCTCTAGATTCAGAAAATATCAAGGAAGAGCAAGTTGTATTATCGTAA
- Protein Sequence
- MNHLKWMGHTDTLLDINRSLRDEAESCEVTLVARGGASVRAHRFVLSTCSDLLRNVLKDVPHNTECTIMLPDITSSLLDSMLSFIYLGETTLSSSSLSEFLEAINLLGIKSAISFECNSTANLNTNSVANAPICGVGNNNGMNIPLKTITGLQITQEEFVDDVEGVEKIVEANNAVTEQQIATARGLEYLDVYSDQAKITYSIEHMAGAGGGGEFILTENANTYTITAPNQVATDKLANTTAAVVDSNDLVEDETEVVDEEEVEDDPNIIEEEYSGGEPLLEMSTTDVEISDPVDITQGQIDSSAEADPQMLEAARASIKLRTIKAKRQIAEHKLAMGHASLPPKPSKSKTKNPIEMDNLEMAAQAVLHEGLSLQKAADKFDLSKTVLWRRMRKDPTYQRIGRVKPELSLAFERLKSGDSLKNISKDLEIPMSTLHRHKVRLSEEGRLPQFVTCRRRDTTPKDELQEKLAKAVHACVHQGMSQNHAANVYEIPKSTLWRHLRRRVAEAEQALDSENIKEEQVVLS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00062097;
- 90% Identity
- iTF_00062097;
- 80% Identity
- iTF_00062097;