Acom024592.1
Basic Information
- Insect
- Amiota communis
- Gene Symbol
- -
- Assembly
- GCA_037043315.1
- Location
- JBAMAV010001387.1:866285-871514[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.0011 0.13 13.6 0.6 1 23 141 163 141 163 0.99 2 12 0.00051 0.061 14.6 1.3 2 23 467 488 466 488 0.97 3 12 2.8 3.3e+02 2.9 0.4 1 23 494 517 494 517 0.91 4 12 0.0027 0.32 12.4 2.7 1 23 534 557 534 557 0.98 5 12 1.4 1.6e+02 3.8 1.1 2 23 608 629 607 629 0.95 6 12 0.025 3 9.3 4.4 3 23 897 917 896 917 0.96 7 12 0.016 1.9 9.9 1.0 1 23 923 946 923 946 0.96 8 12 0.002 0.24 12.8 1.0 1 23 1019 1042 1019 1042 0.97 9 12 0.0012 0.14 13.5 5.0 1 23 1206 1228 1206 1228 0.99 10 12 1.4e-06 0.00017 22.7 0.8 1 23 1233 1255 1233 1255 0.98 11 12 0.0015 0.17 13.2 4.7 1 23 1261 1286 1261 1286 0.95 12 12 0.0044 0.52 11.7 1.9 1 23 1322 1345 1322 1345 0.96
Sequence Information
- Coding Sequence
- atggcaaTAAAAAGCGAAGTTATTGACTTCAAAATATCTTGCCGCTGTTGCTTGAAATCGGACGCGGAATTCTATAAAATAGACACTTTTATGATTGACGATTttcatgaaaagaaaattagtttGCTACAGTGCCTACTTTATAGCACACAATGTGAGGATAAGCCGGAACTGCCCAAGTACATTTGCTTGACGTGCAGTAAAATGCttcatatagtatataaattcTTACAGACAGCGCGGGAAGCACATGAGATACTCTGCCAGAAGCTATGTCCAGAGCGTTGCAAAGCAACTGTAGCACAAATGGAGAAATCAAAGCATACAATGACTACGCTAAGCCCAAGCTCTAATTGTGAAATTAAACGAATGCGACCAAATGAAATGaCGACAAATGCAAAGGATTCCAAAATGTTTCCTTATCGTTGTAAGGTATGCGGCGAGAGAATGCGCAATGAGTTATCCTTAAAGGAACATGTACGCACGCATTTAGATCTTACGTTGTACTCCTGTCAAATGTGTAGTTATGAGACACGCATATGCCAAAAGATCAAGCTACATTATCGAATGACGCATAGAGTGGATCCAACAGAGGAGCAACTTAAACTGCATTCAACATCAGTTAATAAATCGGCAATAAAAACATCATATACACCCACTTCTACACCGATATCAACTCAACCCCCCCTATATGAATCGAAACCTTTAAATCCACTTCAAGCATCATTACCCAAAGATACGAGTATAGTTCAACCGACATGTACATTTGAAGACATAGAACTGCTTATACCGCCAACAATGATAGCGCAAGATCCGCAatgtaaatatgaaaatttggTGAAAAACAAAACGGCAGTGCAAAAGAAGTGTTCCCCAAAGTATAATAAGCAGGTGAAGGGGGGAAAACAGCaggaaaaaataacaaaattgccAGCATCTCTTCAAATGGCAACCGTAATCAGTGATCCGAATGATTTGTCAGTACCACAATTTGAAGAACACGCACCCTTGACTAATGAGTTGAGTGTCGGCACTGAGTTTGTTGTCAAATCAGATGGTAGTGTAGAACAAGTACTGAGTAATGgTGTTGTTATTGAGTACATAACTGCACAGCCCGTGGAGacaaatgtaaatgaaactacacaaaacgaagaaatattaattgatgatgatgcagagATGATGAATGCTGTTAATGAGGTGATAGAGCATATGGATATTGATGAGATCATTGTTGAGGATCCTCCTTTGTCAGAGACCCTTCCAACTTCCACTGGAGCTTTGGCCCAACGCAGAAATCTCAAACAAAAACTGGTGCAGAATGCTACAAATACGAACGGAAACAAAACATCCAACATCCAAGTCACTCAAAATCATTTACAGAGTGAAGACCAGACGAAATGTGTCGTTTGTTCTAAACAATTTACAACTCCGAAACGCCTTCAAAATCATCTACTTTCTCACAAGAATCTACCAAAGTACTTTTGTGATCTCTGCACGTACTTTACAATCATTAGTACCGAGTTAATACAACACTATGAGGCGAAACATCAGCAGGAGGCACCAAACTCGTttgcaaaagagaaaaaagaacaatTCTATATGTGTGAATTGTGTCACTTTAATAGCAGTCAACGAGATGATCTGAAAATCCATTATAGGAAAGATCATAAAGTTGAACCCACTCATCTCCAACTAAGACCAAGTCTTCACATCGTCGAAGAGCAACTTCCCCAACGACAAACcaagcaaaagaaaagtaatCCATTACCATCTGCTAATAATATACCTAAAACTCTTCCCGATTATCCAAATGGTCTGCGGTGCGCTTTATGTCCGGAATTATTTTGTTGGCGTAGTAAATACAAGGAACACTTAAGAGCTCATGTACTCGCCGATACAACTGGATTAGGTGGAAGAccaaataagtttttaaaattcgatagaaataaaaaaattacaagcATTACTGATGCTGCTGTCTCAAACACAATTATGCCAACGAATGAGCTAGAAGAAGTTAATGTGGTGCCTACAACGCCAGTTGagatgttgcaaaatgttgtcGTGATGCCAGCAACTATTGTTGAGCAATTGACAACAACGCCGGCGACAGAACTATCTTCGATGCCCAATTCAGCAACAATTGTCTTAACAAATAATGAACACAACAACATTGATACGACAACGGCATCAACATCAATggttcattttgttgttaacgAAGCAACAATACAATCATCATCAGTGGAAATGATACAAGGACAACAGGGAGCGCAACAGGAAgcgcaacaacagcaattggAAGAAGAAGTTGTACAAGTCGATGACAATACAAATGCTACAATGTTCTGTGATATGCAAGATATCATGAACATCTCAGATGTGGCCGCTGTTTGTACAATTCCTGCAGATGCCATACAAGTTGTCGAAAGCGATGATGTTGTCATCGAAAACaatattgatttcaattttaatacgGATTCTTTGTTCGAGGGTTTTGAAGAGGATGatgaggaagaagaagacgtTGACGACGATGATGTGGAGGAAGatatcgatgatgatgatgatgttaatgacAATAATGATGCTGTAAccgatttaaaaaatatgttgctAACaagcgatgatgatgatttagatgattttgatgatgaacAAGCAAAATCTATGCAGAAACCATTTTGTATGCATTGCAATAGCAAGTTTACAAGTCAATATCAATTCGAGAATCATATGTTTTTACATCGTGGTCTGGCTCCTTATCGTTGCGAGATGTGTACAAATCTCTATAATACAAAACGTGCACTAATGCGTCACTATAAAGCAGTTCATGAGCGCATTCCCACGCGAGATATGATACAAGCAAAAGGAGATAAGGTTTCAGTGGATCGAACACCTATAGAAACCTTGATTGTGGATGAGCAAAAAGCACCAACATTGATGTGTGCCAAGTGTCCGTATGAATGTCTGGAACATGCGGTTATGTTGAGGCATCTTAATGTCAATCATAACATATCAGATGAATCACTCATCGTAAGCAAACTACCCTTTGAGTGTCCACGTTGCATTCGTTCGTACGCAACAAAGAAAACTCTTATAAAGCATCTGCAACGTAGTCATCTTGTTGTTACAATAATTGAGCAAACACCATCATCAGcgtcgacaacaacaacgagtGGCGCAgctacaaaaacaactacatCATTGccgacaacaacagcaaatatgGCAGTGTCGAACTCATCAAATGTATCCCCAAAAATGCTCCGTAGCGGGGATTGCAGAAATATGCAAGCAGAAGGAGAACAACTAAAAGGAATTTTACATCAGGATAATGATAAGCAGCAACAAGAAGTAAGAGGAGTATCAGCTGCAGCAGCAATCaaagaagatacaataaaacataatttaaatattggtAATTCAAGAACAAGAGCAACAGCATTCAAACCAATTTCCAATGATGCGTCATTGTCGCCGcaagaaatttgtaaatttaattacgATTTGATAGACTTGAATGTGGCGGCGTCGACGGTAGCAAATAAGAATCATAGTAATTATAAATCAGCATACAAGCAACAATCACCTTCcagtaaacaaaaacaatttcaatgtaaCATCTGTCAATGTTCCTATACAACATTGAAGTTACTTAAGTTACACACGAAACGCCATGTTTCACGTGAGTTTGTCTGTGTCAAATGCTCGAAATCCTTTGTCACTCCTTCTGAACTTGAGAAGCATAAACGCTCCCATGAAGCCCAATTTATCTACAATTGCAATCAACCTGGTTGCAGAAAAGCCTTTAACTATAAACATCACTTAAAGCGACACAAAGACACAGTACATCTAAAGAAACGTTATATTTGCCCATTACCCCATTGTTGCCGTCAGTTAACAACAAACACCCAACTAAAACTTCATATGTCGTGTCACAAGGGCATGCAAGCGCCATACAAGTGCACAGCTTGCGATCAAAGTTACTCACGTAGAAAACGGTTACGGGACCATGCTTTAAAGTATCACAACATCCAGTTGAGTGACAATGATATCGCGGCAATTTACTGCACAAATGTTGGCCATACAAATCCTTATGATAtgaaactatttaattttaatgataatgaaaaattttaa
- Protein Sequence
- MAIKSEVIDFKISCRCCLKSDAEFYKIDTFMIDDFHEKKISLLQCLLYSTQCEDKPELPKYICLTCSKMLHIVYKFLQTAREAHEILCQKLCPERCKATVAQMEKSKHTMTTLSPSSNCEIKRMRPNEMTTNAKDSKMFPYRCKVCGERMRNELSLKEHVRTHLDLTLYSCQMCSYETRICQKIKLHYRMTHRVDPTEEQLKLHSTSVNKSAIKTSYTPTSTPISTQPPLYESKPLNPLQASLPKDTSIVQPTCTFEDIELLIPPTMIAQDPQCKYENLVKNKTAVQKKCSPKYNKQVKGGKQQEKITKLPASLQMATVISDPNDLSVPQFEEHAPLTNELSVGTEFVVKSDGSVEQVLSNGVVIEYITAQPVETNVNETTQNEEILIDDDAEMMNAVNEVIEHMDIDEIIVEDPPLSETLPTSTGALAQRRNLKQKLVQNATNTNGNKTSNIQVTQNHLQSEDQTKCVVCSKQFTTPKRLQNHLLSHKNLPKYFCDLCTYFTIISTELIQHYEAKHQQEAPNSFAKEKKEQFYMCELCHFNSSQRDDLKIHYRKDHKVEPTHLQLRPSLHIVEEQLPQRQTKQKKSNPLPSANNIPKTLPDYPNGLRCALCPELFCWRSKYKEHLRAHVLADTTGLGGRPNKFLKFDRNKKITSITDAAVSNTIMPTNELEEVNVVPTTPVEMLQNVVVMPATIVEQLTTTPATELSSMPNSATIVLTNNEHNNIDTTTASTSMVHFVVNEATIQSSSVEMIQGQQGAQQEAQQQQLEEEVVQVDDNTNATMFCDMQDIMNISDVAAVCTIPADAIQVVESDDVVIENNIDFNFNTDSLFEGFEEDDEEEEDVDDDDVEEDIDDDDDVNDNNDAVTDLKNMLLTSDDDDLDDFDDEQAKSMQKPFCMHCNSKFTSQYQFENHMFLHRGLAPYRCEMCTNLYNTKRALMRHYKAVHERIPTRDMIQAKGDKVSVDRTPIETLIVDEQKAPTLMCAKCPYECLEHAVMLRHLNVNHNISDESLIVSKLPFECPRCIRSYATKKTLIKHLQRSHLVVTIIEQTPSSASTTTTSGAATKTTTSLPTTTANMAVSNSSNVSPKMLRSGDCRNMQAEGEQLKGILHQDNDKQQQEVRGVSAAAAIKEDTIKHNLNIGNSRTRATAFKPISNDASLSPQEICKFNYDLIDLNVAASTVANKNHSNYKSAYKQQSPSSKQKQFQCNICQCSYTTLKLLKLHTKRHVSREFVCVKCSKSFVTPSELEKHKRSHEAQFIYNCNQPGCRKAFNYKHHLKRHKDTVHLKKRYICPLPHCCRQLTTNTQLKLHMSCHKGMQAPYKCTACDQSYSRRKRLRDHALKYHNIQLSDNDIAAIYCTNVGHTNPYDMKLFNFNDNEKF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -