Basic Information

Insect: Amiota communis
Gene Symbol: -
Assembly: GCA_037043315.1
Location: JBAMAV010000243.1:229200-231367[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 1.5 1.8e+02 3.7 0.4 2 23 290 312 290 312 0.89

2 10 0.0016 0.19 13.1 0.6 6 23 321 338 321 338 0.99

3 10 8e-07 9.5e-05 23.5 1.1 1 23 344 367 344 367 0.98

4 10 0.0015 0.18 13.1 1.4 3 23 382 402 380 402 0.96

5 10 0.00014 0.016 16.5 1.5 1 23 409 432 409 432 0.96

6 10 9.9e-06 0.0012 20.0 2.1 1 23 438 460 438 460 0.97

7 10 2.2 2.7e+02 3.2 1.7 2 23 469 490 468 490 0.95

8 10 2.5e-05 0.0029 18.8 1.4 2 23 496 518 495 518 0.95

9 10 1.4e-06 0.00017 22.7 0.4 2 23 525 546 524 546 0.96

10 10 0.00028 0.033 15.5 4.5 1 23 552 575 552 575 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	1.5	1.8e+02	3.7	0.4	2	23	290	312	290	312	0.89
2	10	0.0016	0.19	13.1	0.6	6	23	321	338	321	338	0.99
3	10	8e-07	9.5e-05	23.5	1.1	1	23	344	367	344	367	0.98
4	10	0.0015	0.18	13.1	1.4	3	23	382	402	380	402	0.96
5	10	0.00014	0.016	16.5	1.5	1	23	409	432	409	432	0.96
6	10	9.9e-06	0.0012	20.0	2.1	1	23	438	460	438	460	0.97
7	10	2.2	2.7e+02	3.2	1.7	2	23	469	490	468	490	0.95
8	10	2.5e-05	0.0029	18.8	1.4	2	23	496	518	495	518	0.95
9	10	1.4e-06	0.00017	22.7	0.4	2	23	525	546	524	546	0.96
10	10	0.00028	0.033	15.5	4.5	1	23	552	575	552	575	0.96

Sequence Information

Coding Sequence: ATGATTTGTCGTCTATGCCTTAAGAATCTGGGTCCAGAGAGTGCAATAGATTTGtttgaaacaaatgaaaccaaaacgACAAACCTGGTTAAAGTTATTTCAAGATTCCTGCATTTAGAGATAACACGATACGATGCTTACTCAACATATGTCTGCTCAGAGTGCTGTGATTATTTGGAAGATTTTAATCGTTTTTCGGTGTTGAttcaacaaaagcaatatacattGCAAAATCATTTCCTTAAAGTAGATTGTGATATTCATATGACCACATTGAATAGTGATGACGGTGGCCATGACGATGCCGacgataataatgatgtgAAACCAATACTAACAGATGAGGATGCGGATGACGATGAGGACGAGAAACCATTGGATTTAAATATGATAGATTTATCCAAAGTAATAGTAACAGGAGGTGATGCGTCGGAGTCGGTAACTGAAGCAGATAAGTCGATGTCAATGCATtgtttcacaacaacaacaacaacaacaccaccaatATCTACATCATCTGCATTAGCTAATGAAGAATTTTCCGAAGCTAAAGTAATTGAAAGCGATGATGATGAAATTCCACTTATAAATCTATTGCagaaactaaaaactaaatttaaaactaaaactaaaaagcGAAAGCATCATATGCATGTGTTAAGAAAGAACAATGAAAAGCAGCAGCTTAGTGAATATGATCAAGTATGTCGTCGTCTAGACAGGGCAAAAGCATCTGCCAGTAGTAATGGTGTCGCTGTTCCTACTACTcttgaattaaatgatttactggAACGTAAAACGAAAGGTGTTTCAAAAAAGAATCTATCACTGCATTATGAGGAAGTTATTGCTAGTTTTATGGATGCAAAGTGTGATCTCTGTGACTTCACGACAATGTATTTCACAGGTCTGCGTGTGCATTTCCTTGAGGTACATCAGCGTGAGCCGTATATGAAATGTTGCAACAAAATGTTCTCACGTCCATCCAAAATGATGGATCATGTACGCAGACATCTTAATCCAGATATATTCAAATGcacaatttgtaataaatcaCTTAGTTCAAAAGAATATCTACAAACGCATATGGAGACCATTCATTATAAAACTGAAACGGAAGTTGCCAGTGCTCCATCACTTGCCTGCAGCAAATGTGACAAGTTATTCAGTAGCCAAAAACGCCTTGACAATCATCTTAGCAAACACGATAACGATCAGTTGCGCTTCGATTGTGATTTATGCAATAAGagCTTTGCTAATATACATCGTCTGCGACGTCATGTACAATCGATACACGAGAATTTGTATCCACATGTTTGTGATATATGTggcaaaaaattcaaattcaaaccATCGTTTGAACGACATCTGAATGAGCACCAAGGTGTTATTGCGCAACCCATGCAGTGTTCCAAATGCAACGTATGGCTGAAAAATGAGCATAGTTTGCGTCTGCATGCTTTCACCCACGACAGAGTTAATACCGAATGCAAGAATTGTGGTAAGATTTGCTCAACGCGCACAGCCTTACGAGCCCACATTAAATATGCACATCGTCTTCTGGTCGATCTACCATGCCCATTCTGTTCAAAAACATTCAAACAGCGACGCAACTTAGAGGAACATATGGCCATACATACAGGATTACAACTCTATACATGTCCACATTGTCCCAAAGAGTGTCGTTCCCGTTCAAACATGTATGTTCATGTTAAGCAACGACATCCAGAGGAATGGTTACGTGCAAAAATGGCACGGTCGAACAATCCTAACGAACGACTACGAACGGAATAG
Protein Sequence: MICRLCLKNLGPESAIDLFETNETKTTNLVKVISRFLHLEITRYDAYSTYVCSECCDYLEDFNRFSVLIQQKQYTLQNHFLKVDCDIHMTTLNSDDGGHDDADDNNDVKPILTDEDADDDEDEKPLDLNMIDLSKVIVTGGDASESVTEADKSMSMHCFTTTTTTTPPISTSSALANEEFSEAKVIESDDDEIPLINLLQKLKTKFKTKTKKRKHHMHVLRKNNEKQQLSEYDQVCRRLDRAKASASSNGVAVPTTLELNDLLERKTKGVSKKNLSLHYEEVIASFMDAKCDLCDFTTMYFTGLRVHFLEVHQREPYMKCCNKMFSRPSKMMDHVRRHLNPDIFKCTICNKSLSSKEYLQTHMETIHYKTETEVASAPSLACSKCDKLFSSQKRLDNHLSKHDNDQLRFDCDLCNKSFANIHRLRRHVQSIHENLYPHVCDICGKKFKFKPSFERHLNEHQGVIAQPMQCSKCNVWLKNEHSLRLHAFTHDRVNTECKNCGKICSTRTALRAHIKYAHRLLVDLPCPFCSKTFKQRRNLEEHMAIHTGLQLYTCPHCPKECRSRSNMYVHVKQRHPEEWLRAKMARSNNPNERLRTE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00062220; iTF_00063026;
90% Identity: -
80% Identity: -