Acom017149.1
Basic Information
- Insect
- Amiota communis
- Gene Symbol
- ZFY_1
- Assembly
- GCA_037043315.1
- Location
- JBAMAV010001125.1:14010857-14012692[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.00028 0.033 15.5 0.2 3 23 135 155 134 155 0.99 2 11 4e-06 0.00047 21.3 1.4 1 23 161 184 161 184 0.97 3 11 2.6e-05 0.003 18.7 0.6 1 23 190 212 190 212 0.97 4 11 0.00014 0.016 16.5 0.6 1 23 218 240 218 241 0.95 5 11 0.00019 0.022 16.0 1.0 1 23 248 270 248 270 0.93 6 11 0.0022 0.26 12.6 0.2 1 23 276 299 276 299 0.96 7 11 1.7 2e+02 3.6 0.1 1 23 306 327 306 327 0.89 8 11 6.5e-06 0.00077 20.6 2.7 1 23 335 357 335 357 0.98 9 11 0.00025 0.029 15.6 5.0 1 23 363 385 363 385 0.99 10 11 0.004 0.47 11.9 1.7 1 23 391 416 391 416 0.94 11 11 0.0002 0.024 15.9 0.3 1 21 422 442 422 443 0.96
Sequence Information
- Coding Sequence
- ATGGTACGCAGTCGTCGCTCGATTTCAAAAGAGGATGTTGCTTTACTGCAAAACGATAGCGGAGTTTCGTTATCGTCGCCACCTGGAGTAAACCACACAGAAGATGAAACCGAAGATCAAAAGCCTGGTTTAGGTCACACTGAAGATGGAGATGGCGAAGGTGATGCTGATGCGTATGCAGATGGGGATGGTGATGACAGTGATGAAGACTATGTGTTGCCTCCACGTAAGAAAGCACGCACCAAAGCAATTAAAAGAGATGTAGAGTATGTGTTACCTCCACCTAAGAAGCCACGCACCAAAGCAATTAAAAGAGATGCAGAGTATGTGTTACCTCCACCTAAGAAGCCACGCaccaaaacaattaaaaaggaaaacacaTCGTATCGCAAAACTCACGGTTGTTCTATTTGCGCTAAAGAGTTTGGTGGCAAAACCGATCTAAAGCGTCACATGCTTATACACTCCGATGAACGTCCACACAAATGTGAGCAGTGCGGCAAAAGCTATCGTCAGGGGGTCAACTTGAAGAATCACATAACAACAGCACATGATGGACGTAAGGAATTTGCTTGCAAGCTTTGTCCAAAATCTTTTGCACTCAAGGAACGTTTGCGTCTCCATATGCGCTTACATTCGGGTGAGAAACCCTATGCCTGTTCATTATGTGAAAAACGTTTTGCACGAGGCGGTCAGCTTCAACAACATGTTATCTCACATCACAAAAACAGTATTCagcaatttaattgtattaaatgCTCAGCGAGTTTctcaacaaatacaaatctACGCGTGCATATGGAACGTCACGAGCATGGACGCGAACATCGATGTGCCATCTGTGAGGAACAATTTCCCAATGTAATTTCTTTGCGTACACACATCAATCAAATTCACTCAAAggcaaaaaaacaatttgattgTGAAGTTTGTCAAACGACAATcgatggtgatgatgctgCAAAACACAtgaagaaacacaaacaaaaaccagtTAAGATTCACACATGTGAGGtttgcaattcaatttttacacaaaaatcaCAGTTCAATGTCCATATGCGCATGCATACGGGTGAGAGACCCTACCAATGTCGGATATGTTATCATACTTTTGCACACTCTAGCGTGTTGAAATTGCATATAAGAAAACACACTGGTGAAAAACCCTTCAAATGTCTACTGTGCACAGATGAagtatcattttctcaattggCACATTTGAAAACACATAtgaagaaaatacataaaaaacataaacctTATATGTGTGAGGGTTGCCATCAATTCTTCAAAGTCAAAGTGGAACTACAGGCACATTTAAAATTGTGTACCAAGCAAAGCAGCAAAAATGAAGATTTAAATGCCAATAATGAAAGTGATCAGCTGGCACTGTCAAACATGCGTCTTCATATGGCAATTGTATTAAAGAAGATCTCAACAGAACAAAAGCTACGCCAATTGGGATTTGAGAAACGACTGATAgataatgttgttattgcttcgCTTAAACTAGCTAAACGTACGGCACATGATGATCCAAAACTCTTGCCCATAGATCGTCTACGTTTGAACGTAGAGGAGTTTCTTAACTGGATTGTTCCTGCAAAAGCAATGGAAAAATTTCAAGAAGAATCGCTTTCGGTAGATACAATTCTCGACAAAATAGCCACCATGTATacgaaacaacaaacaacacgaCCCACTCAGTAG
- Protein Sequence
- MVRSRRSISKEDVALLQNDSGVSLSSPPGVNHTEDETEDQKPGLGHTEDGDGEGDADAYADGDGDDSDEDYVLPPRKKARTKAIKRDVEYVLPPPKKPRTKAIKRDAEYVLPPPKKPRTKTIKKENTSYRKTHGCSICAKEFGGKTDLKRHMLIHSDERPHKCEQCGKSYRQGVNLKNHITTAHDGRKEFACKLCPKSFALKERLRLHMRLHSGEKPYACSLCEKRFARGGQLQQHVISHHKNSIQQFNCIKCSASFSTNTNLRVHMERHEHGREHRCAICEEQFPNVISLRTHINQIHSKAKKQFDCEVCQTTIDGDDAAKHMKKHKQKPVKIHTCEVCNSIFTQKSQFNVHMRMHTGERPYQCRICYHTFAHSSVLKLHIRKHTGEKPFKCLLCTDEVSFSQLAHLKTHMKKIHKKHKPYMCEGCHQFFKVKVELQAHLKLCTKQSSKNEDLNANNESDQLALSNMRLHMAIVLKKISTEQKLRQLGFEKRLIDNVVIASLKLAKRTAHDDPKLLPIDRLRLNVEEFLNWIVPAKAMEKFQEESLSVDTILDKIATMYTKQQTTRPTQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -