Acom007144.1
Basic Information
- Insect
- Amiota communis
- Gene Symbol
- -
- Assembly
- GCA_037043315.1
- Location
- JBAMAV010000566.1:1797196-1799916[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.056 6.6 8.2 0.3 2 23 227 248 226 248 0.96 2 14 0.00075 0.089 14.1 5.2 1 23 335 357 335 358 0.96 3 14 0.098 12 7.5 1.5 1 21 365 385 365 386 0.92 4 14 0.00048 0.057 14.7 1.9 1 23 395 417 395 417 0.97 5 14 1.3e-05 0.0016 19.6 0.9 1 23 424 447 424 447 0.98 6 14 0.00023 0.028 15.7 3.1 2 23 455 476 454 476 0.97 7 14 0.0041 0.49 11.8 0.0 2 21 503 522 502 523 0.94 8 14 0.003 0.36 12.2 5.1 1 23 571 594 571 594 0.98 9 14 0.0053 0.63 11.5 0.4 2 23 632 654 631 654 0.94 10 14 2.7e-06 0.00032 21.8 1.3 2 23 691 713 690 713 0.96 11 14 0.15 17 6.9 0.2 1 23 728 750 728 750 0.95 12 14 0.00059 0.069 14.5 2.7 1 23 756 778 756 778 0.99 13 14 8.6e-07 0.0001 23.4 2.0 1 23 784 806 784 806 0.98 14 14 2e-05 0.0024 19.1 4.7 1 23 812 834 812 834 0.98
Sequence Information
- Coding Sequence
- atggcaaaaaatagaatttgcAGGACCTGTGATGTTTCTAGTCCTGCTGAAGTTTTTAGATTAGATTCATGTCCTAAGAAATATTTCGGAAAAATACTATTGGATTTATTGATAGATGTGACCAATATTGATGTGGAGATGAAGTACGCAGAAAAGTTACCGCACAGTCTTTGCATTTCTTGTACAAGGAAACTTAAGAGTGCATATGATTTTGTAATTCAAGCGCGCGAAGCAAATAAGGAAATGATGAATATTATTAAAGCCACCGACCAAGATTCTAAACCAAATATCGATAAAGAATGTCTTCGAGAGACACCAATGGAAATTTGTATTGAACAGTTTCATGAAGTAAAACTTGAACAACCATGTAAAGAAGCTTCCACTGAATTTGTCGATTCtctaataaaagaaattcaactAGGAGATGCATCACAAgaacatgatgatgacaaaattgataaaaatcaGTCGTTAGATCCTCTTAGCGAACTAGATGGCAAATTATCTTTGAAATCTGTTCGAAAATCTATTCGATGTATACGCAAACAAAGTCATTTGGGAAGATCACATGAAGAAGATGAGcctaaaactttaaaaataaccgCAACACTTTCTGAAAGGAAACAAGCAAAATCAGTTGATAGCAATCTATGTAAACCGCATGGTTGCAAACTAATACAGTGTATGATTTGTCTACAGAAATATGGGAAAATCTCTGATTTACGTAATCATTTGAAGGAGCATCCGGATATTTCCGCACTTTCAGAACGATCAAATGAAACCTTGCAGGAGATTGCCGACAGCTTTTTTTTTGACTGTAAAAATGCAACTGAACAAAAGCTGATAATGCGAATACGCAAAGATTTAAACGCTAAAAAGTTTGACAATTATTACTCAATTACAAATCAATCAGGTTATGAGTTAAGTTTATCGACTTCAGAGACtgaaagtgatgatgatgcagaATCAGAAGAGGATATCAGTAAGGTTGCTAGGAAGAGCTACTCCTGTGAATTGTGTAATAAAAGATTCCTTCGAAAATACCAACTTTTTGATCACCAGAGACAACACCATGAGTGGAACGATGCTGTTCATATTTGCAGACGCTGTGATGCACgatttgtaaataaacaattacttgatcatcattatcaatcaCAGTGTAGAAATGCACAAAAACGCTTCATATGTCCCAAGTGTCCCCTTAGGTTTCGTTGGAAACATAATCTAAGGATACATTACCGAGAGCACCGGGAAAACATACAAACTTATGAATGCTTTGAATGCAAACGCACTTATGATGACAAAAGATCACTAACCATACACATGCTTACTGTCCATACTGATGAATCTAATTTGCTGCCATGCCATTGGTGTAATAGAATGTTTTACCGAAGAGATTATATGTTGAAACACCTTAAACGTCATGGCATAAGTGAAAAAGATTTGCCTCTTGCTGAAATGCTTGTTATGGCAAATTCACAACCCAATGGTGATAAAATCATTCAAtgcaaaatttgtaatttacaaTTCGAACGAATCAATGATTTGAAAGTACACATTCTGTTGgaactgaaattaaatttatcgaGACATCAGAGCTACGAATCGCTAGAAAATTACTTAATTACGAATAAAGCTGGCTTCGAACTGCATCTCGATGACTCCGAAACAGATGAAGAAGATTCAGTTGATAGTAAGCAGATGATATACAAGTGTGAAATTTGCCAACTTCAGTGTAAGCGCAAGTTTCAAATGTTTCAACATCAACGATCAATACATCAATTTGAGCATTTGCCGCACTCTTGCGAGAAGTGTATTTTCAAATGTGTATCAAagGAAATACTTGATCATCATCGGAACACACAATGTTTTAATGAGCAAAAGAAGTTGTCATGCGAAAAATGTTCCTATAAATTCATGTGGCCTGAAAACTTGACGAGGCATATGTTGCTCCAACATTCAGTCGAAACTGAAAACAAGATGACTCTACTAGAAtctaacataaataatttgacAAATACTTCAGTTCGCAATGTTAAGGGAGAATCAAATGCGATTGCTCAATTGCAGTGTCCCCATTGTGATCGAACCTATGTTCAACAATCTCGGCTTAATAATCATATAAGAAATGTTCATATAAATGGTAACAgacaaaagagaaaagaagcTGATCGAAAGTTCCTCTGCTCTTTATGCGGCCTAGAAACCCAGTCGGCCAGGGATTTAGATATACATACGAAAAGACATACTGGAGAGAAACCATTTAAATGTGATATGTGTGAGATGGCATTTCCACGAAACTGTGAAATGATGCAACATCGAAGAAAACACACAGGTGAAAAACCTTATCATTGCACTGTTTGTGACAAGGATTTTGCCCGCTCTGACAAACTTAAGCGGCACATGTTGATTCACAGTGGCCTTAAGCCATACAAATGCACATACTGTGAAAAGTGCTATCGTCAATCTAAAGATCTAAAAATACACCTCTTACAGCATACCACTTATACAGTTGTAAAATAA
- Protein Sequence
- MAKNRICRTCDVSSPAEVFRLDSCPKKYFGKILLDLLIDVTNIDVEMKYAEKLPHSLCISCTRKLKSAYDFVIQAREANKEMMNIIKATDQDSKPNIDKECLRETPMEICIEQFHEVKLEQPCKEASTEFVDSLIKEIQLGDASQEHDDDKIDKNQSLDPLSELDGKLSLKSVRKSIRCIRKQSHLGRSHEEDEPKTLKITATLSERKQAKSVDSNLCKPHGCKLIQCMICLQKYGKISDLRNHLKEHPDISALSERSNETLQEIADSFFFDCKNATEQKLIMRIRKDLNAKKFDNYYSITNQSGYELSLSTSETESDDDAESEEDISKVARKSYSCELCNKRFLRKYQLFDHQRQHHEWNDAVHICRRCDARFVNKQLLDHHYQSQCRNAQKRFICPKCPLRFRWKHNLRIHYREHRENIQTYECFECKRTYDDKRSLTIHMLTVHTDESNLLPCHWCNRMFYRRDYMLKHLKRHGISEKDLPLAEMLVMANSQPNGDKIIQCKICNLQFERINDLKVHILLELKLNLSRHQSYESLENYLITNKAGFELHLDDSETDEEDSVDSKQMIYKCEICQLQCKRKFQMFQHQRSIHQFEHLPHSCEKCIFKCVSKEILDHHRNTQCFNEQKKLSCEKCSYKFMWPENLTRHMLLQHSVETENKMTLLESNINNLTNTSVRNVKGESNAIAQLQCPHCDRTYVQQSRLNNHIRNVHINGNRQKRKEADRKFLCSLCGLETQSARDLDIHTKRHTGEKPFKCDMCEMAFPRNCEMMQHRRKHTGEKPYHCTVCDKDFARSDKLKRHMLIHSGLKPYKCTYCEKCYRQSKDLKIHLLQHTTYTVVK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00061336;
- 90% Identity
- -
- 80% Identity
- -