Basic Information

Insect: Amiota communis
Gene Symbol: -
Assembly: GCA_037043315.1
Location: JBAMAV010000566.1:1779322-1782785[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.00076 0.091 14.1 0.7 1 23 225 247 225 247 0.98

2 15 6e-06 0.00071 20.7 3.0 1 23 253 275 253 275 0.98

3 15 0.24 28 6.3 0.1 2 23 303 324 302 324 0.95

4 15 0.0024 0.29 12.5 0.7 1 23 397 420 397 420 0.92

5 15 0.0031 0.36 12.2 0.4 1 22 427 448 427 448 0.97

6 15 0.19 22 6.6 3.1 1 21 513 533 513 534 0.95

7 15 0.0018 0.21 12.9 1.6 1 23 680 703 680 703 0.97

8 15 0.0053 0.63 11.5 1.8 1 22 710 731 710 731 0.96

9 15 0.0037 0.44 11.9 0.9 1 23 740 762 740 762 0.97

10 15 0.00086 0.1 13.9 2.5 1 23 815 838 815 838 0.98

11 15 0.00037 0.044 15.1 0.3 1 23 882 904 882 904 0.95

12 15 7.9e-06 0.00094 20.3 0.4 1 23 910 932 910 932 0.99

13 15 1.9e-07 2.3e-05 25.4 1.9 1 23 938 960 938 960 0.99

14 15 4.1e-06 0.00049 21.3 1.9 1 23 966 988 966 988 0.99

15 15 0.004 0.48 11.8 0.2 1 22 994 1015 994 1018 0.90

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.00076	0.091	14.1	0.7	1	23	225	247	225	247	0.98
2	15	6e-06	0.00071	20.7	3.0	1	23	253	275	253	275	0.98
3	15	0.24	28	6.3	0.1	2	23	303	324	302	324	0.95
4	15	0.0024	0.29	12.5	0.7	1	23	397	420	397	420	0.92
5	15	0.0031	0.36	12.2	0.4	1	22	427	448	427	448	0.97
6	15	0.19	22	6.6	3.1	1	21	513	533	513	534	0.95
7	15	0.0018	0.21	12.9	1.6	1	23	680	703	680	703	0.97
8	15	0.0053	0.63	11.5	1.8	1	22	710	731	710	731	0.96
9	15	0.0037	0.44	11.9	0.9	1	23	740	762	740	762	0.97
10	15	0.00086	0.1	13.9	2.5	1	23	815	838	815	838	0.98
11	15	0.00037	0.044	15.1	0.3	1	23	882	904	882	904	0.95
12	15	7.9e-06	0.00094	20.3	0.4	1	23	910	932	910	932	0.99
13	15	1.9e-07	2.3e-05	25.4	1.9	1	23	938	960	938	960	0.99
14	15	4.1e-06	0.00049	21.3	1.9	1	23	966	988	966	988	0.99
15	15	0.004	0.48	11.8	0.2	1	22	994	1015	994	1018	0.90

Sequence Information

Coding Sequence: ATGgatgcagaaatattaaataattctgCAGTTTGCAGAACATGTGAGGAAACCAATAAGGCTTTCATCAAATTAACAACCCGCAATGAAAAGCATCCGGAAAAAACTTTAGCCGATATGCTTCTGGAGTTAGCAAGAATTGAGTCAAATGATGCATTGCCTCAGCAAATGTGCCTAACATGCTGGATCCGATTGAAAGACgcttttgattttgtactGCAGGCGCAGCAGGTTAACCAACGCCTAATAGCAAATAcagaaaatgtttgttttaggGATAATTTGGATTGCCTGCTGGAGGCACCCATAGTGGAAATAGAAGTTTGTACTGAAGATGAGCTGCCTCATTTTCCGGACACTAATATTGATGAAGGTACAACAATTGTTGGTCCTACAGCTTCACAAGATGAATACACAGGTGATGAGCATGagaacgatgatgatgatgatgaagggaGATTAACTGATCATAATAGTATTGGTGACTATGAAGAAAACGTCAAGGACAATAGTATTGAGCGAGGCGAAAATGTGTTAGCTAAAATGTTGCGTAGCTATAGTTCGATATTACCAGCTAAGAGGTTAAAAGAGAATCCAAAAAGGAAATTAGATGATACTGACAGTGATGAtgaCTATGTGCCGTCGAAACGATTGTCGACTAATGCAGGTCGTTATGTGTGTGACACATGTGGCAAAACATTTGCATGGTACAAGGAATTTTTACGGCATGTTAAAAGTCACAGTTTAGAAGAAAAATTCATGTGCGATTTTTGTGGCAAAGGATTTTATCGGAAAGACAAATATATGAATCATATGCGAAAGCATACAAAGGAGTCGGATGTCGAAGTAAAAAAACGTACAAATTTCTGTGATCGTCTATACTCTGAGAAACGTTTTAAACTTCTTGAATGCCGTCTGTGTATTACTCGATTTTCTACAATTGAAGAATTATTACTCCATCTAATAACACACAAGAATATCGAGTCCTTGGATAATCTTACTATGGataatattgttataaaagaGTTCTATGGAAATGGTAATATAAGTTTGACACAAATCAAGGAAACCATATGCCAAGAGATAGTAGCGCttcaatataacaaatattgcTTATTACTTAACGAATATGGCTATGAGATGAGTTTCGATGATTCAGATGACGATAGTCCAACAGGATATGACAAGTATTTTTGTGAGTTGTGTGGTGAAAACTTTACACGAAAATATCAGGCACTTCAGCATGCCCAGGAAAAGCATAAGCAAGAAGCAATGTCCTATCGTTGTAATGTTTGTAAGTTGCTCTTTATTTCGGAAGAGTTGCTTAAGCAACACACACGAACTCAATGTCGAAACCGAGATAAAAAGTATAAATGCCTAAAGTGTCCAGGCAAATTTATGTGGGCTGAAAATCTCGATCAACATAAGTGTGCtgataatgtaataaaatctGATTCTCAAGATAGTCAAGATGgatcaaatgatgatgatggtggtgaggAAGAAATGATTGATGGTATCAGAAACAAGGCGTCATATCAATGTTGCCTTTGCATTGAAAGTTTCAAGCATTTTCAACAATTGCGAACACATTTAATGGTGTGTAAGGCGACAAAAAGAAGTAAACCTGTCAAAGTGAAATCAATTGATAGTCAACGTTGTAAACCGCATGGTTGCAAGCGCATAGAATGCATGATTTGTCATACACAACATCAGAAAATCTCTGATTTAAAAACACACCTTAGTCAACATCAGTTTGCTGTTGATTTTAatgctgctggtgctgttACTGGCACAGAAGATGATACAGCAGCTATAGATGCCATTTGTCAGGCTCTGTATCCTGAAGAAGAGAAAGCTTTAACGAAGGCAACACTCAGAAGTCGCATCATGTCCGACATAGCAAAGAAACAATATGAACGTTTCTATTCCATAACAAATGAGGCTGGTTATGAGTTGAGTTTAGACAGTAGTGAAACAGAAACCGATTCAGAGTCAGAGCTTGAGAACaaccaaaatacaaaatgtgaTCGAAAGTACTTCTGtgaagtatgtatgtttggGTTTACGCGTAAATATCAATTATATGCCCATCAGCAAACGAATCATCAATGGGATGAGGCTAACCATGTTTGTGTCCATTGTCAAGGACGTTTTATAAGTTCATCGCTACTGGAACATCATACACGCACACTTTGTCGCAATGCATTGAAACGTTTCATTTGCAGAAAATGCCCACAACGTTTTCGGTGGAGTGAAAATTTCAAGGCTCACGCTAATACCCATTGTGATATTGGAGATGCAAAGCAGGATTTACTTGTACAATGTGAAAATAAAGAGAAGCAATTAACATTTCAACATTTGCATCGACATCATTCATATAATGGTGGTGCAGGGCCAGAGCTTAAAACTGAATTAACTGATAAtggaacaaaacaaatattccaGTGTCCACAATGTCCATGTAAATACAATCGTAAGGATCGTATAACTGcacatatgaaaaaaatacatggCATCCAatgtgttggtggtggtgctaGTGGTAAGAGACGCAATGCTATTACTGGTAGCAGTACTTCACGTAAAAGAGTCGTTGAAAGCAGTCCTcaagagaaattgaaaaaagccAATTGCAAACGTTTTCTCTGTGATTTGTGTGGTAAAACTATGGAGTCATCAGCACATTTAATTATTCACATGCGTGGTCATACTGGTGAGAAACCATTCAAATGTGATTTGTGTGAAAAGGCATTCGCACGATCAGCGGATATGCAAAGCCATCGTCGTATCCACACCGGCGAACGTCCATATAAATGTACAGTCTGTGAGAAGGATTTCTCCCGTTCCAATCAGCTTCTCAAGCATATGCGCATGCATAACGGAGAGCGTCCatacaaatgtacatattgtGAAAAGAGTTTCACACAATTAAATGTTCTAACCTTGCATATAAGACGTCATACTGGTGAGCGGCCCTATGTATGTGGCACTTGTGGCAAAGGCTTTATAGAGGGTACCTCTCTAAAAAATCATCGTATTAAGCGTGGTCATACCGCGGAACCATTGCGTCCCGTCAAACTTGACCAATTTACGGTTAGTTAA
Protein Sequence: MDAEILNNSAVCRTCEETNKAFIKLTTRNEKHPEKTLADMLLELARIESNDALPQQMCLTCWIRLKDAFDFVLQAQQVNQRLIANTENVCFRDNLDCLLEAPIVEIEVCTEDELPHFPDTNIDEGTTIVGPTASQDEYTGDEHENDDDDDEGRLTDHNSIGDYEENVKDNSIERGENVLAKMLRSYSSILPAKRLKENPKRKLDDTDSDDDYVPSKRLSTNAGRYVCDTCGKTFAWYKEFLRHVKSHSLEEKFMCDFCGKGFYRKDKYMNHMRKHTKESDVEVKKRTNFCDRLYSEKRFKLLECRLCITRFSTIEELLLHLITHKNIESLDNLTMDNIVIKEFYGNGNISLTQIKETICQEIVALQYNKYCLLLNEYGYEMSFDDSDDDSPTGYDKYFCELCGENFTRKYQALQHAQEKHKQEAMSYRCNVCKLLFISEELLKQHTRTQCRNRDKKYKCLKCPGKFMWAENLDQHKCADNVIKSDSQDSQDGSNDDDGGEEEMIDGIRNKASYQCCLCIESFKHFQQLRTHLMVCKATKRSKPVKVKSIDSQRCKPHGCKRIECMICHTQHQKISDLKTHLSQHQFAVDFNAAGAVTGTEDDTAAIDAICQALYPEEEKALTKATLRSRIMSDIAKKQYERFYSITNEAGYELSLDSSETETDSESELENNQNTKCDRKYFCEVCMFGFTRKYQLYAHQQTNHQWDEANHVCVHCQGRFISSSLLEHHTRTLCRNALKRFICRKCPQRFRWSENFKAHANTHCDIGDAKQDLLVQCENKEKQLTFQHLHRHHSYNGGAGPELKTELTDNGTKQIFQCPQCPCKYNRKDRITAHMKKIHGIQCVGGGASGKRRNAITGSSTSRKRVVESSPQEKLKKANCKRFLCDLCGKTMESSAHLIIHMRGHTGEKPFKCDLCEKAFARSADMQSHRRIHTGERPYKCTVCEKDFSRSNQLLKHMRMHNGERPYKCTYCEKSFTQLNVLTLHIRRHTGERPYVCGTCGKGFIEGTSLKNHRIKRGHTAEPLRPVKLDQFTVS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -