Acom007139.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Amiota communis
Gene Symbol
-
Assembly
GCA_037043315.1
Location
JBAMAV010000566.1:1773376-1778250[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 26 0.0073 0.86 11.0 0.9 1 23 248 270 248 270 0.96
2 26 9.1e-06 0.0011 20.2 3.0 1 23 276 298 276 298 0.98
3 26 0.36 43 5.7 0.1 2 23 326 347 325 347 0.95
4 26 0.0014 0.17 13.3 0.6 1 23 420 443 420 443 0.93
5 26 0.0089 1.1 10.7 0.8 1 22 450 471 450 471 0.97
6 26 0.2 24 6.5 4.6 1 23 536 558 536 558 0.98
7 26 0.029 3.5 9.1 0.3 1 20 645 664 645 665 0.96
8 26 0.35 41 5.7 1.4 1 21 677 697 677 698 0.94
9 26 0.0091 1.1 10.7 0.4 2 23 708 730 707 730 0.97
10 26 0.00015 0.018 16.3 0.3 2 23 745 766 744 766 0.97
11 26 3.2e-06 0.00038 21.6 0.8 1 23 773 795 773 795 0.98
12 26 0.022 2.6 9.5 1.4 1 23 941 964 941 964 0.97
13 26 0.01 1.2 10.6 1.1 1 22 971 992 971 992 0.95
14 26 0.0047 0.56 11.6 1.2 1 23 1001 1023 1001 1023 0.97
15 26 5.5e-05 0.0066 17.7 0.6 1 23 1036 1058 1036 1058 0.97
16 26 3e-05 0.0036 18.5 0.8 1 23 1065 1087 1065 1087 0.97
17 26 0.0023 0.28 12.6 0.1 3 21 1115 1133 1114 1134 0.97
18 26 0.011 1.3 10.4 6.4 1 23 1180 1203 1180 1203 0.94
19 26 0.15 18 6.9 0.9 2 22 1211 1231 1210 1231 0.96
20 26 0.15 18 6.8 2.4 3 23 1242 1262 1240 1263 0.93
21 26 0.00044 0.052 14.9 2.3 1 23 1286 1309 1286 1309 0.97
22 26 6.3e-06 0.00075 20.7 0.2 2 23 1357 1378 1356 1378 0.95
23 26 0.0061 0.72 11.3 3.3 1 23 1384 1406 1384 1406 0.99
24 26 1.1e-06 0.00013 23.0 3.6 1 23 1412 1434 1412 1434 0.99
25 26 2.2e-07 2.6e-05 25.3 2.4 1 23 1440 1462 1440 1462 0.99
26 26 0.0029 0.34 12.3 0.0 1 22 1468 1489 1468 1492 0.90

Sequence Information

Coding Sequence
ATGGATGCAGATGTAGTAAATAATTCTGCAGTTTGCAGAACATGTGAGGAAACCAATAAGACTTGCATCAAATTAACAACCCGCAATGAAAAGCATCCGGAAAAAACTTTAGCCGATATGCTTCTGGAGTTAGCAAGAATTGAGTCAAATGATGCATTGCCTCAGCAAATGTGCCAAACATGCTGGAACCGATTGAAAGACgcttttgattttgtactGCAGGCGCAGCAGGTTAACCAACGCCTAATAGCAAATAtagaaaatgtttgttttaggGATAATTTGGATTGCCTGGTGGAGGCACCCATAGATATATCGTCGCATGATTTTCTTGAAATCAAAATGGAAATAGAAGGTTGTACTGAAGATGAGCCGCCTCAATTTCCGGACACTAATATTGATGAAGGTACAACAATTGTTGGTCCTACAGCTCCAAAAGATGAATACACAGGTGATGAGCATGagaacgatgatgatgatgatgatgatgaatggaGATTAACTGATGATAACAGTAATGCTGACTATGACGAAAACGTCAAGGACAATAGTATTGAGCGAGGCAAAAATGTGTCAGCTAGACATTTACGTAGCTCCAGTTCGATATCACCAGCTAAGAGGTTAAAAGATAATCCAAAAAGGAAATTAGATGATAGTGACAGTGATGAtgaCTATGTGCCGTCGAAACGTCGACGTGGACGACCACGATCTTCCAAACGATTGTCGAATAATGCAGGTCGTTATGTGTGTGACACATGTGGTAAAACCTTTGCATGGCACAAGGATGTTTTACGGCATGCTAAAAGTCACAGTTTAGAAGTAAAATTCATGTGCGATTTTTGTGGCAAAGGATTTTATCGGAAAGACAAATATATGAATCATATGCGAAAGCATACAAAGGAGCCGGATGTCAAAGGAAAAAAACGTACAAATTTCTGTGATCGTCTATACTCTGAGAAACGTTTTAAACTTCTTGAATGCCGTCTGTGTATTACTCGATTTTCTACAATTGAAGAATTATTACTCCATCTAATAACACACAAGAATATCGAGTCCTTGGATGATCTTACTATGGataatattgttataaaagaGTTCTATGGAAATGGTAATATAAGTTTGACACAAATCAAGGAAACCATATGCCAAGAGATAGCAGCGCttcaatataacaaatattgcCTATTACTTAACGAATATGGCTATGAGATGAGTTTCGATGATTCAGATGACGATAGTCCAACAGGATATGTCAAGTATGTTTGTGAGTTGTGTGGTGAAAACTTTACACGAAAATATCAGACACTTCAGCATGCCCAGGAAAAGCATAAGCAAGAAGCAATGCCCTATCGTTGTAATGTTTGTAAGTTGTTCTTTATTTCGGAACAGTTGTTTGAGCAACACACACGAACTCAATGTCGAAACCGAGATAAAAAGTATAAATGCCTAAAGTGTCCAGGCAAATTTATGTGGGCTGAAAATCTCGATCAACATAAGTGTGCtgataatgttaaaaaatccGATTCTAAAGATGGTCAAGATGGATcaaaagatgatgatggcggTGAGGAGGAAATGATTGATGGTATCAGAAACAAGGCGTCATATCAATGTTGCCTTTGCATTGAAAGTTTCGAGCATTTTCGTCAACTGCGAACACATTTAATGGTCCACAAAGACGGTGTAACTCAAGTGGATTTTGAACATGGTACATTCTTTAAGTGTTATTATCCAAGTGGTTGTGTTGGACAAGAATCTGCattaagcaaacaaattgaaGACGATTTTAATGCACAAAATTATACATGTTTTTATAGTGCATTATCTAGACGTGGTCTAGAGTTGAACCTTTATGATTCAGACTCTTCAACAGGAAATGAAGTTTTAGAAACAACTGCTAATAATGAAAgtgaacaagaacaaaaaacttcaTATGTTTGTGGTGTATGTGGTGAAACCCATAAAAGACGTACATCATTACTAAAACATCAAGAATGTCAACATGGCGATCATGAGCAATCATTACCATTTTCATGtgacaaatgcaaaaaacagTATGTGTGCGCTGAATTATTGGAACAACATCAAATGCGAGATTGCTTAAACCGCCATAAGACAATTCAATGTGATAAATGTGATGCTCGTTTTGTGTggcaaatgaattttgaaacCCATCAGCGTATGTCTCATATGAGCTCTTACAAATTGGATGAAAAATTGGCTAAGAAATTACAGTGCGATCAATGCGATAAAGTATTTATATGGCCAAAGGATTTAACGCGACACAAACGAGTTCATCTACCAGATACTGAGAAATATGAATGTCCATTTTGTGAACGGAAATTCGTCAGAAAGGACAATATGCAATCACACATTAAAGTCCACAGCGAGGAGGCAAAACGAAGTAAACCTGTCAAAGTGAAATCAATTGATAGTCAACGTTGTAAACCGCATGGTTGCAAGCGTATAGAATGCATGATTTGTCATACACAACATCAGAAAATCTCTGATTTAAAAACACACCTTAGTCAACATCAGTTTGCTGTTGATTTTAatgctgctggtgctgttACTGGCACAGAAGATGATACAGCAGCTATAGATGCCATTTGTCAGGCTCTGTATCCTGAAGAAGAGAAAGCTTTAACGAAGGCAACACTCAGAAGTCGCATCATGTCCGACATAGCAAAGAAACAATATGAACGTTTCTATTCCATAACAAATGAGGCTGGTTATGAGTTGAGTTTAGATAGTAGTGAAACAGAAACCGATTCAGAGTCAGAACTTGAGAGCaaccaaaatacaaaatatgatCGAAAGTACTTCTGtgaagtatgtatgtttggGTTTATGCGTAAATATCAATTATATGCCCATCAGCAAACGAATCATCAATGGGATGAGGCGAACCATGTTTGTGTCCATTGTCAAGGACGTTTTATAAGTTCATCGCTACTGGAACATCATGCGCGCACGCTTTGTCGCAATGCACTGAAACGGTTCATTTGCAGAAAATGCCCACAACGTTTTCGGtggaaagaaaatttcaaGGCTCACGCTAATACCCATTGTGATACTGGAGATGCAAAGCAGcCATCAACAATATTTGAGTGTTTGGAGTGTAATCGCGTATTCCAAATGCAAAAGGATCTCACACGTCACATGGTTATGCATTCACGTGATTCGGCAATTTTTGCCTGTCAGTGGTGTCCGCGTAAATTTTATCGTCGTGGTAATCTTACTCAACATTTGGAACGGCATGGCATTTCTCCACATGAGTTATCATATGCCGAGACGCtcattaatttacataaatatgcaAATGGCAAGAAGgttattttgtgtaaaatttgCAATGTTAAATTCGAAAGAATCTCAGAGTTGCGGGCACATTTGAGAGATGCCCCAACCATGCATCACAATTTTGATTCCAtgttaaattatacaataacaaatcaatTGGGCTTCGAAATGCATTTAGAGGATTCAGAAACCGATGATGAGAAAAATATGGACGATGGTGGTGGTACACTAGTTTATACCTGTGAACTGTGCCAGCTTGTGTGCCGTCGTAAGCATGAGCTATTTCGTCATCAACATGCTATGCATAAACTGGAAAAAATTGAACTGAAATGTACGCATTGTGTTTTCAAAAGTGTTTCAAAGGATTTACTTGCCTATCATCAACGTACACAATGTGAAAATAAGGAAAAGCAACTAGCTTGCTCCgaatgcaatttaaaattcatgtGGCAAGATAATTTAACTCAACATTTGCATCTACATCATTCAGATAATGGTGGTGCAGGGTCAGAACTTAAAACTGAATTaactgaaaatgaaacaaaacagatTTTCCAGTGTCCACAATGTCCATGTAAATACAATCGTAAGGATCGTTTAAATGCACATGTGAAAAAAATACATGGCATCCATGGTGGAGGTGGTGCTAGTGCTAGTGGTGGTGGTAATAGTGGCAATGCTATTGCTGGTAGCAGTACTTCACGTAAAAGTGTCGTTGAAATCAGTGCTgaagagaaattgaaaaaagccGATTGCAAACGTTTTCTTTGTGCTTTTTGTGGTAAAGCTGTGAGTTcatcatcaaatttaattatacacATGCGTCGTCATACTGGTGAGAAACcattcaaatgtgatttttgtgAAATGGCATTCGCACGATCATCGGATATGCAATGTCATCGTCGTACTCACACCGGCGAACGTCCATATAAATGTACAGTCTGTGAGAAGGCTTTCTCGCGTTCCTATAAGCTTCATCAGCATATGCGCATACATAACGGAGAGCGTCCatacaaatgtacatattgtGAAAAGAGTTTCACACAATCAAATGATCTTACCTTGCATATAAGACGTCATACTGGTGAGCGGCCCTATGTCTGTGGCATTTGTGGTGAAGGCTTCATACAGGGAACCGCTCTAAAGAATCATCGTATTATGCGTGGTCATACTGAAGAGAATGCGCAACCATTGCGTCGCACAAAACTTGAGCAATTTACCGTTAGTTAA
Protein Sequence
MDADVVNNSAVCRTCEETNKTCIKLTTRNEKHPEKTLADMLLELARIESNDALPQQMCQTCWNRLKDAFDFVLQAQQVNQRLIANIENVCFRDNLDCLVEAPIDISSHDFLEIKMEIEGCTEDEPPQFPDTNIDEGTTIVGPTAPKDEYTGDEHENDDDDDDDEWRLTDDNSNADYDENVKDNSIERGKNVSARHLRSSSSISPAKRLKDNPKRKLDDSDSDDDYVPSKRRRGRPRSSKRLSNNAGRYVCDTCGKTFAWHKDVLRHAKSHSLEVKFMCDFCGKGFYRKDKYMNHMRKHTKEPDVKGKKRTNFCDRLYSEKRFKLLECRLCITRFSTIEELLLHLITHKNIESLDDLTMDNIVIKEFYGNGNISLTQIKETICQEIAALQYNKYCLLLNEYGYEMSFDDSDDDSPTGYVKYVCELCGENFTRKYQTLQHAQEKHKQEAMPYRCNVCKLFFISEQLFEQHTRTQCRNRDKKYKCLKCPGKFMWAENLDQHKCADNVKKSDSKDGQDGSKDDDGGEEEMIDGIRNKASYQCCLCIESFEHFRQLRTHLMVHKDGVTQVDFEHGTFFKCYYPSGCVGQESALSKQIEDDFNAQNYTCFYSALSRRGLELNLYDSDSSTGNEVLETTANNESEQEQKTSYVCGVCGETHKRRTSLLKHQECQHGDHEQSLPFSCDKCKKQYVCAELLEQHQMRDCLNRHKTIQCDKCDARFVWQMNFETHQRMSHMSSYKLDEKLAKKLQCDQCDKVFIWPKDLTRHKRVHLPDTEKYECPFCERKFVRKDNMQSHIKVHSEEAKRSKPVKVKSIDSQRCKPHGCKRIECMICHTQHQKISDLKTHLSQHQFAVDFNAAGAVTGTEDDTAAIDAICQALYPEEEKALTKATLRSRIMSDIAKKQYERFYSITNEAGYELSLDSSETETDSESELESNQNTKYDRKYFCEVCMFGFMRKYQLYAHQQTNHQWDEANHVCVHCQGRFISSSLLEHHARTLCRNALKRFICRKCPQRFRWKENFKAHANTHCDTGDAKQPSTIFECLECNRVFQMQKDLTRHMVMHSRDSAIFACQWCPRKFYRRGNLTQHLERHGISPHELSYAETLINLHKYANGKKVILCKICNVKFERISELRAHLRDAPTMHHNFDSMLNYTITNQLGFEMHLEDSETDDEKNMDDGGGTLVYTCELCQLVCRRKHELFRHQHAMHKLEKIELKCTHCVFKSVSKDLLAYHQRTQCENKEKQLACSECNLKFMWQDNLTQHLHLHHSDNGGAGSELKTELTENETKQIFQCPQCPCKYNRKDRLNAHVKKIHGIHGGGGASASGGGNSGNAIAGSSTSRKSVVEISAEEKLKKADCKRFLCAFCGKAVSSSSNLIIHMRRHTGEKPFKCDFCEMAFARSSDMQCHRRTHTGERPYKCTVCEKAFSRSYKLHQHMRIHNGERPYKCTYCEKSFTQSNDLTLHIRRHTGERPYVCGICGEGFIQGTALKNHRIMRGHTEENAQPLRRTKLEQFTVS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00062984;
90% Identity
-
80% Identity
-