Acom017534.1
Basic Information
- Insect
- Amiota communis
- Gene Symbol
- -
- Assembly
- GCA_037043315.1
- Location
- JBAMAV010001133.1:1969608-1970033[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 5.9e-11 1.8e-07 31.6 0.0 8 36 47 75 43 83 0.90 2 2 0.19 5.7e+02 1.2 0.0 4 34 91 120 90 125 0.83
Sequence Information
- Coding Sequence
- ATGACCGGAGCCGTTATGGAAATAAGTGACCCCGATTCATCTGCCGAAGCAGCAAGGACTTCTACACTGAAACGCAAACTTACAATGGGTCCAGcatctaaaagaaaaaaaccaattaaaacGAGCAACGTCGACATAGCTGCCCAGGCTTATATTAATGGAGGACTAAGTTTACAGAAAGCTGCCAATAAGTTTTATATATCCAAGACAGTACTTTGGCGTGGCATGTCTGAAGATCTAAACTATCAAAAGAATTGTGCTGGTAAAAGAGATTTCTCGTTGGCATTGGAACGTTTGAAAAGTGGTGATTCACTTCAGAAAATTAGTCAAGATCTTGAAATACCAATGTATACATTACGTTTTAATAAGAGACTTTTTTGTTTGAGGGTAGCCTGCAACAGGGGCGTATTGTGTCATCAATACTAA
- Protein Sequence
- MTGAVMEISDPDSSAEAARTSTLKRKLTMGPASKRKKPIKTSNVDIAAQAYINGGLSLQKAANKFYISKTVLWRGMSEDLNYQKNCAGKRDFSLALERLKSGDSLQKISQDLEIPMYTLRFNKRLFCLRVACNRGVLCHQY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -