Acom003107.1
Basic Information
- Insect
- Amiota communis
- Gene Symbol
- bab1
- Assembly
- GCA_037043315.1
- Location
- JBAMAV010000230.1:572134-573950[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.3e-17 3.9e-14 52.9 0.0 1 43 56 99 56 101 0.95 2 2 5.2 1.6e+04 -3.4 3.0 4 24 199 222 196 224 0.69
Sequence Information
- Coding Sequence
- ATGCTGGAGAACTCGCATGCTTGGATGGGTGGCGCTTCCGGTTCAGCGCTAACAGCAGATAGCTACCAGTATCAGTTGCAATCGATGTGGCAGAAATGCTGgaacacaaaccaaaatcttATGCATCATTTGCGTTTCCGCGAACGTGGCCCATTGAAATCGTGGCGTCCAGAAACAATGGCTGAAGCGATTTTTAGTGTATTAAAAGAGGGGCTCTCATTGTCGCAAGCGGCTCGCAAATATGATATACCATATCCGACTTTTGTACTCTACGCTAATCGTGTCCATAATATGCTTGGCCCTTCAATTGATGGAGGTCCGGACCTACGTCCCAAAGGTCGAGGAAGACCACAACGTATACTCTTAGGCATTTGGCCAGATGAGCATATCAAAGGTGTTATCAAAACAGTAGTCTTTCGTGATTCGAAGGACCTTAAGGATGATAGCTTAGCGCATATAGCACCCTATGGTAGACATTCGCCTGTATTTCCCTTCCAGGATATGCCCATGAACTATCCCGGTGGCCCAATTAATCCTAGTGGAGCGTGTCCAAATGGCATGCCTACACCCACCGGAGATCAAATGTCGCAGGAAGCAACTGCTGCCGCTGTAGCGGCCGTCGCACACAATATACGCCAACAAATGCAAATGGCTGCCGCCGCACAACAACATCAGGAAGGACCACCTGGTCTCTTTAACTTGCCACCCCATCTACAACCACCACATTCAGGTGGACCTGGTGGCATTCCGCTGCCAAAGGCTAGCATTTCTCCAGCGCTAAGTAGTGGTTCGAATCctggaggtggtggtggaggcCTGGGTCTTATGCCACGCCATGCTCCATCACCTTGCGGTCCTGGAGTAGGTGGAGGTGGTGGAGGCGTCGGTGGAGTCATACCAGGTCTTCCACCGAATATATCGCCCAGCATGGCTGTTGCTTTGGGTCGTTGTGATCCAGCTGCATTActtaatcaacaacaacaacaactgcaattACAGCAGTTGCACCTGCAGCAACAGCACGCActgcatcagcagcaacaaaaaactgGTTTCGGTGTAAGTTCCATGCCACATCCTTCGTCCTCAGCAGCAGCCGCAGCTGCAGCAAGTGCGAGTTCATTAGCTGCTggtcatcagcatcagcatcatcaacatcacctccaacatcatcatcatcagcagcagcaacaacagcaacagcagcaacagcagcaacaacaacagcaacagcagcaactcCAACACCAACAAGCCCAGCAGCTACATCATACACATCATATATCTCCCCATCCccttcatcaacaacaacaacaacatcagacTTCTCTGTCATCtgcaccatcatcatcttccGTCGACAAATCAAAAGCGCTTTCTACTCCAGAACGAAGACATAGTAATGAAACACCTCGATTACATTCACCGCTCACCGAATTGGGTCTGGAAATGAGTTACAAGCGTGAATATTCCCCGACGCGACTCTTTGCCGACGACTTGGCTGAACTTGTAGGCGGTGTATCTTCCTCATCTTCAACGGCCACCACTTCTGCTCAAATGGGCATTGCTACCACCTCATCGACCGGAGTCACAACTACAGAAACTAATAAACTAAATACGATCACATCGAGCTCAAGCAGTAACATTAAAGTGGAACCAATTACAACAAGCAGTGAATAA
- Protein Sequence
- MLENSHAWMGGASGSALTADSYQYQLQSMWQKCWNTNQNLMHHLRFRERGPLKSWRPETMAEAIFSVLKEGLSLSQAARKYDIPYPTFVLYANRVHNMLGPSIDGGPDLRPKGRGRPQRILLGIWPDEHIKGVIKTVVFRDSKDLKDDSLAHIAPYGRHSPVFPFQDMPMNYPGGPINPSGACPNGMPTPTGDQMSQEATAAAVAAVAHNIRQQMQMAAAAQQHQEGPPGLFNLPPHLQPPHSGGPGGIPLPKASISPALSSGSNPGGGGGGLGLMPRHAPSPCGPGVGGGGGGVGGVIPGLPPNISPSMAVALGRCDPAALLNQQQQQLQLQQLHLQQQHALHQQQQKTGFGVSSMPHPSSSAAAAAAASASSLAAGHQHQHHQHHLQHHHHQQQQQQQQQQQQQQQQQQQQLQHQQAQQLHHTHHISPHPLHQQQQQHQTSLSSAPSSSSVDKSKALSTPERRHSNETPRLHSPLTELGLEMSYKREYSPTRLFADDLAELVGGVSSSSSTATTSAQMGIATTSSTGVTTTETNKLNTITSSSSSNIKVEPITTSSE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00061866;
- 90% Identity
- iTF_00061866;
- 80% Identity
- -