Acom016018.1
Basic Information
- Insect
- Amiota communis
- Gene Symbol
- -
- Assembly
- GCA_037043315.1
- Location
- JBAMAV010001125.1:1403469-1405199[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 7e-11 2.1e-07 31.4 0.0 3 44 389 430 388 431 0.92 2 3 0.027 82 3.9 0.0 27 37 460 470 456 475 0.89 3 3 7.2e-19 2.2e-15 56.9 0.0 3 41 498 536 496 538 0.93
Sequence Information
- Coding Sequence
- ATGGGTCACACAGACACCCTTTTGGATATAAATCGCTCCTTACGCGACGAAACAGAAAGTTGCGAAGTGACTCTAGTTGCCAGAGGCGGTTCTTCAGTTCGCGCTCATCGTTTTGTTCTGTGCACTTGCAGCGAATTACTCCGAAATGTACTCAAGGATGTGCCCCATGAATCGCAGTGCACAATTATGCTACCAGATATTACCTGTGCACTTTTGGAAAGTATTGTTTCGTTCATTTACATGGGTGAGACAAATTTATCTTCTGCGAGTCTCTCGGAATTTCTTGAGGCCATCAATTTGTTGGGAATCAAATCTGCCATTAGTTTTGAGTGCAATTCATCTGCTATGAATACGAGCTCAGTCAGCAATACAACATTAGGTGGTGGTGTTCGTAATCTCAATAGTCCAATAAACATGGCTTTAAAAGCCATAAGTGGCCTACAAATTACACAGGAAGAATTTGTTGAAGATGTCGACAATGTCGAGAAAATTGAGGCAAGCAATGCCGTCATTGAGCAACAGTTGGACACCGCTAGAAGCTTAGAGTATCTTGATGTCTACAGTGAACAAGCTAAAATCACTTATTCCATTGAACACATGGAAGGAGGCGGTGGCGGTGGTGAATTTATATTGACAGAAAATGCAAACACTTATACCATAACAGCACCGAATCAAGTAGTCGACGACAAATTATCAAATACAACAGCTGCCGTGGTGGACAGCAATGATTTAGTGGAAGATGAAACCGAAGTTGTTGATGAAGAAGAGGTTGAAGATGATCCAAACATAATCGAAGAGGAGTATAATAGTGGTGGAGAAACTCTTTTGGAAATGACCGGAGCCGATGTCGAAATAAGTGACCCCGTTGATATAACACAAGGACAAACCGATTCATCTGCCGAAGCTGATGCACAAATGCTGGAAGCAGCAAGGGCTTCTATTAAATTGCGTACAATAAAACCGAAACGACAATCATTAACTGACCCCGTTGATATAACACAAGGACCAACCGATTCATCTGCCGAAGCTGATGCACATATGCTGGAAGCAGCAAGGGCTTCTATTAAATTGCGTACAATAAAACCGAAACGCCAAATTGCAATGGGTCCAGGTAGCATGACAACAAAACCATATAAATCTAAAGGAAAGAATCCAATTGAAATGGACAACCTCGAGATGGCTGCCCAGGCTGTTATCCATGAGGGACTAAGTTTACAGAAAGCTGCcgataagttttatttgtctAAGACAGTGCTTTGGCGTCGCATGCGCAAAGATCCAACCTATCAAAAGATTGGTCGTGTTAAACCAGAACTCTCGTTGGCATTTGAACGTTTGAAAAGTGGCGATTCACTTAAGAATATTAGTAAAGATCTTGAAATACCAATGTCTACATTACATCGTCATAAGGTACGTCTTTCGGAAGAGGGTCGCTTGCCACAGTTTGTGACCTGTCGTCGTCGCGATACAATACCTAAAGATGAAATTCAAGAGAAACTTGCCAAGGCAGTGCATGCTTGTATCCATGAAGGCATGTCACAGAATCATGCAGCCAATGTCTATGAGATACCAAAAAGTACACTTTGGCGTCATCTAAGGCGACGAGTCGCTGAGGCTGAACAAGCTCTCGATTCAGAGAGTATCAAGGAAGAGGAAGTTGTATTATCATAA
- Protein Sequence
- MGHTDTLLDINRSLRDETESCEVTLVARGGSSVRAHRFVLCTCSELLRNVLKDVPHESQCTIMLPDITCALLESIVSFIYMGETNLSSASLSEFLEAINLLGIKSAISFECNSSAMNTSSVSNTTLGGGVRNLNSPINMALKAISGLQITQEEFVEDVDNVEKIEASNAVIEQQLDTARSLEYLDVYSEQAKITYSIEHMEGGGGGGEFILTENANTYTITAPNQVVDDKLSNTTAAVVDSNDLVEDETEVVDEEEVEDDPNIIEEEYNSGGETLLEMTGADVEISDPVDITQGQTDSSAEADAQMLEAARASIKLRTIKPKRQSLTDPVDITQGPTDSSAEADAHMLEAARASIKLRTIKPKRQIAMGPGSMTTKPYKSKGKNPIEMDNLEMAAQAVIHEGLSLQKAADKFYLSKTVLWRRMRKDPTYQKIGRVKPELSLAFERLKSGDSLKNISKDLEIPMSTLHRHKVRLSEEGRLPQFVTCRRRDTIPKDEIQEKLAKAVHACIHEGMSQNHAANVYEIPKSTLWRHLRRRVAEAEQALDSESIKEEEVVLS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00061264;
- 90% Identity
- iTF_00061264;
- 80% Identity
- iTF_00061264;