Aequ005468.1
Basic Information
- Insect
- Ametastegia equiseti
- Gene Symbol
- -
- Assembly
- GCA_963989295.1
- Location
- OZ022391.1:2777334-2780123[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 2.4e-05 0.0028 18.7 4.4 1 23 261 283 261 283 0.97 2 12 0.005 0.59 11.4 2.5 2 23 289 310 288 310 0.95 3 12 2.4e-05 0.0028 18.7 0.8 2 23 320 341 319 341 0.97 4 12 5.1e-06 0.00059 20.8 8.4 1 23 437 459 437 459 0.98 5 12 0.0017 0.2 12.9 1.1 1 22 464 485 464 488 0.90 6 12 4.8e-06 0.00056 20.9 0.7 1 23 527 550 527 550 0.90 7 12 6.2e-07 7.3e-05 23.7 1.0 1 23 586 608 586 608 0.98 8 12 0.00019 0.022 15.9 4.0 1 23 622 644 622 644 0.96 9 12 0.00017 0.021 16.0 4.7 1 23 650 672 650 672 0.98 10 12 0.0016 0.18 13.0 3.2 1 23 678 700 678 700 0.98 11 12 5.3e-05 0.0062 17.6 6.5 1 23 706 728 706 728 0.98 12 12 0.00025 0.029 15.5 0.3 1 21 734 754 734 755 0.93
Sequence Information
- Coding Sequence
- ATGGATATTAAagtagaaaaaagtatcgcCGAGGACAATTTGGATGACGTTTGCCGAGTCTGTCTCTCTTTGGATAAAAATAGCGAATTCATTTTCCGAGACCAAGTTACGGTTCGAAAAATCGACGATAAATTCACCCTGTCGCAAAAGCTCCAACTTTACGGTGGCATAGAGATCTGGGAGGACGATGGACTTCCAACTAAAATCTGCACGATTTGCATATCAAAAATTAACGTCGCGCATGATTTTCGTGATCAATGTCAAAGGGCCgatgaaaaactgcgaaaatTATACGGCAAATTCGTGCTTAGAAATAAGTCCAAGGATCAACATAGTCAAACAGATGCATCTTTATTGCCAGCCCGTGTCAAGCAGGAAGAAACTGCAGCTAATCAAACAGCCGGCGACGATTTGCAGGCAGAATGTACCGCGAGTATAGAAACTGAAATGGAGTTGAGTAAAGAGCGAGGAGTTCCATTTGAGACTATTTACAAAGAAGAGATTCATATCGAAGATCATAAAATCTTGCCGGACTTAGACGGCCCCCGAAATttgatagagaaagagaaaagctTGGTAAAAAGAGAAGCGTGTAGGACAAGAAGGGTTTCCATGTTCAAGAGAATGACTTCTAtggagaatttgaaaagccATAAAGAAAGACAGAGGCagtatataaaaaagaatacaaaCTCTAAAACTGAATCCAACGAGCAGGATTCAGGCCTGAGTAAAAATACTCGAGTTAGAGATAGCAGGTCAATTGAATCAGAACATTCTCACAAGTGTAGTAAATGCAATAGATCATATTCGACGAAAAAGTCATTGGAAAGACACGAGGCGACTCACGAGGAGAAGAAATTACAATGCGATAAATGCAATAAGCAGTTTTTTAGAACAGAAAAATTAACGGAGCATAATAAGCTCCACGATTCTCAACCCAAGCCGAACCCGGTATCCTGCAAAATTTGTGATAAAAGTTTTAGGAAAACTGATACTATGGTCAGACATCTGAATATCCACAAAAAAGCTAATCCTaaagaagttttttcaattctaaaaGAAATTAGAGACAGAAGGAAGCTGGGAAATGAAACGGAGAATTCTACCAAGGATGGGAAAGCCTCGATTCAAGAGGAAAAAGCTGAGCTTAGCAAGGAAGAAAGTAGTAGCGGCGATGAGACTGAAGCAAAGGAGACGAGCAAACGTCTTCCGACATCAAATGACGATCAAGACTACAACCCGGACTCCCCAAACTCAGAATCCCATAGCGAAAGTGAAACTGATTCTTTCAATAACTTGGCATTCTACAGATGTAAACATTGCACTAAATGTTACTCGACAAAGAAGTCGTTGCAAAGGCATATGTTGATACATGACGAAAAGAAATTCGTTTGTAACGTTTGTAACATGAAATTCTTCAGGCCCGACAGACTGAAGAGTCATAGGGATAGATACGGGCATGACGAAGACAAGGAATGCACAGAACCACAAAAGCCACCAGACGACAAATCGgcaataaaattaataaacagTTGGATAAGAGAGGAACTGGATTCGGATAATGAGGGAAAAGGATTTCCTTGCGAAATTTGCGGCAAATCTTACGTCACAAAGAAATCTTTGCAAAAGCACAAAGTTAACATGCACGAAAGTAGGACGGATATTTGCGCCAGTTGTAAAACAGAGAAATGCAAATGCAAATGTGCCGAAAAGCCTAGGGACACCGAaagaaagattgaaaaatcaaagccGTACAGCTGCGACGAATGCAACAAGTCCTTTGAGAAGGAATCGAAGCTAGAAAAGCATTTGAGGATTCACGAGCGTGCTAAAGAACAacaagattcaaatttcaaacgatttttatGCCACATTTGCAGCAAAACATTTCGTCAAAATACCGGACTGATGTTTCACATGAGAACGCATACCGGCTATAAACCGCATGTGTGTAAATACTGCGGTCGGGGTTTTACTTCGAATTCAAACTGCATAAACCACGAGAGAACTCACACAGGCGATCGCCCGTTTGTTTGCCATTTTTGCAGTGCTGCATTCGCAAAGTCTTGTACTTTAAAAGCCCACATAACGACTCACACAGGGGAAGCTAATTACCATTGTAAAACGTGCGGAAAATCGTTTAGAAGATTAAAGTACTTGAAAGAGCACAGGTTTACTCATACCGGGGAAAAACCATACGCGTGCAAAATTTGTGGCACAGCCTACAGCCATTCCGGTAGCTTATTTGTACATGAAAAGAAGTGCAAGGCTCAGTACAGCAGCTATCAAACGGCGTCAGGGCAAAACATGCAGAATTATAATCAGTCGCAAAACAACGTTAATACTTCTTCAGTTATGACTCCTATAATTCCTATGCTATCTTCGTCCCATCATTTGAGTAACATTAACAATCCATTAGGAGCTAATAAGAGTTACGTTGAAAGTATGCAGCGTATGAGCGCTCATGCTGCTGCCGCAGCTGCGGTCGGTAATCCAGCTTTGCATATGCATCCAAATCAGGATGTATCAGAAATGGCTTCGGCTGTTAGAAGTTTTGCTATTATAGGACAAATGTTTCATTCGTAA
- Protein Sequence
- MDIKVEKSIAEDNLDDVCRVCLSLDKNSEFIFRDQVTVRKIDDKFTLSQKLQLYGGIEIWEDDGLPTKICTICISKINVAHDFRDQCQRADEKLRKLYGKFVLRNKSKDQHSQTDASLLPARVKQEETAANQTAGDDLQAECTASIETEMELSKERGVPFETIYKEEIHIEDHKILPDLDGPRNLIEKEKSLVKREACRTRRVSMFKRMTSMENLKSHKERQRQYIKKNTNSKTESNEQDSGLSKNTRVRDSRSIESEHSHKCSKCNRSYSTKKSLERHEATHEEKKLQCDKCNKQFFRTEKLTEHNKLHDSQPKPNPVSCKICDKSFRKTDTMVRHLNIHKKANPKEVFSILKEIRDRRKLGNETENSTKDGKASIQEEKAELSKEESSSGDETEAKETSKRLPTSNDDQDYNPDSPNSESHSESETDSFNNLAFYRCKHCTKCYSTKKSLQRHMLIHDEKKFVCNVCNMKFFRPDRLKSHRDRYGHDEDKECTEPQKPPDDKSAIKLINSWIREELDSDNEGKGFPCEICGKSYVTKKSLQKHKVNMHESRTDICASCKTEKCKCKCAEKPRDTERKIEKSKPYSCDECNKSFEKESKLEKHLRIHERAKEQQDSNFKRFLCHICSKTFRQNTGLMFHMRTHTGYKPHVCKYCGRGFTSNSNCINHERTHTGDRPFVCHFCSAAFAKSCTLKAHITTHTGEANYHCKTCGKSFRRLKYLKEHRFTHTGEKPYACKICGTAYSHSGSLFVHEKKCKAQYSSYQTASGQNMQNYNQSQNNVNTSSVMTPIIPMLSSSHHLSNINNPLGANKSYVESMQRMSAHAAAAAAVGNPALHMHPNQDVSEMASAVRSFAIIGQMFHS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01414402;
- 90% Identity
- -
- 80% Identity
- -