Aequ015482.1
Basic Information
- Insect
- Ametastegia equiseti
- Gene Symbol
- -
- Assembly
- GCA_963989295.1
- Location
- OZ022395.1:14990430-14991686[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.00029 0.035 15.3 2.8 1 23 63 85 63 85 0.94 2 12 1.4e-07 1.7e-05 25.7 2.3 2 23 92 113 92 113 0.98 3 12 4.5e-06 0.00053 21.0 5.8 1 23 136 158 136 158 0.95 4 12 0.00011 0.012 16.7 4.4 2 23 164 185 163 185 0.97 5 12 0.00054 0.063 14.5 0.1 1 23 190 212 190 212 0.98 6 12 1.2e-06 0.00014 22.8 0.9 1 23 220 242 220 242 0.98 7 12 0.41 49 5.4 1.5 1 23 248 271 248 271 0.93 8 12 0.00012 0.014 16.6 0.3 3 23 284 304 282 304 0.96 9 12 6.5e-07 7.7e-05 23.6 1.8 1 23 310 332 310 332 0.96 10 12 1.8e-08 2.1e-06 28.5 0.2 1 23 338 360 338 360 0.98 11 12 1.3e-07 1.6e-05 25.8 0.9 1 23 366 388 366 388 0.98 12 12 0.00054 0.064 14.5 1.7 1 21 394 414 394 415 0.95
Sequence Information
- Coding Sequence
- ATGCTATCGAAGCTCGATCTGGTCAAAACAAAGCCTGACAAAGGAGCTGAAAAACTTGGCAACTCCGATAAGACAAACAACTCTGGGAATGGTCcgataaaagaagaaatccAGGATGACGATGGGGATGGGGAAGCCGAcgaggaggaagaagaggaagacgaCGAGGAGGACATGCCATTGGCTTTCCACTGCAAAACTTGCGGCGTTTTCTTCAAGACTAAGACGCTGCTAAATAATCACGAGATCGAGCAtaagggaaaaagaaagaacacCTGCAACCAGTGCGGCAGAGTATTCCGTACCTATGTCAATCTCCGTAAACACATGAAGAAGCACGCTGGTAACAAACGAAAGAACGTCGGCAGGCCTATGAAAGTTAAGCAGGAGAAAAGCGACGTGGAATTTCTCTGCAAGACTTGCAACAAGGTATTCAGACACAAGAGCAACTACCAGAAACACCTGCTTCGCCATACCGTTGGCGATCTCACCTGCAATCACTGCCCCAAGAAGTTCAGACTGTTTCGCGACCTCACAAGACACGAAAAGACCCACTTCTATCCAAGCTACATGTGCAAGGAGTGCGACTACGAGACCACCGTTCTCGCCGCTCTTTCCATCCATATGCTCAGGCACACCAACAAGGCTGACTTACCCTTCAAGTGCAATGAGTGCGATAAGAGGTTTAGAAAAGCTATCGAGCTTCAGGAACACTATAATATTCACTCAGGAGACAAGCCTTTCGCATGTACGGCTTGCGGCAGTGCTTTTTACCTCAGAAGACAGCTGTCTGCCCACTGCAGGAGGATGCATCCTGAAATGAAGGCAAACAAAGTGACTAGTACAGCATGTGATATATGCGGAAGAGTATTGGCGACCAAGAGGTCTCTTTTCCGCCACAAGGAGAGTCACAATCCAACGAAATTGTACCTGTGCGATTACTGCGGAAAGAGTCTTAGCAGTGCGGAGCATCTCAAGAAACATCGGCGTATACATACAGGGGAAAAACCTTACGTTTGCGATATTTGCGGCAAGGGATTCACGGACTCTGAGAACTTGAGAATGCATCGGCGTATTCATACCGGGGAAAAACCCTATAAGTGCGATCAATGCCCTAAGGCCTTCTCCCAGAGGTCCACTCTCACTATACATCGGCGCGGTCACACCGGGGAGAGACCTTACATCTGCCAAATTTGTCATCGCGGTTTCTCTTGCCAGGGCAATCTCACTGCTCATCAAAAATCTACCTGCGTTTGA
- Protein Sequence
- MLSKLDLVKTKPDKGAEKLGNSDKTNNSGNGPIKEEIQDDDGDGEADEEEEEEDDEEDMPLAFHCKTCGVFFKTKTLLNNHEIEHKGKRKNTCNQCGRVFRTYVNLRKHMKKHAGNKRKNVGRPMKVKQEKSDVEFLCKTCNKVFRHKSNYQKHLLRHTVGDLTCNHCPKKFRLFRDLTRHEKTHFYPSYMCKECDYETTVLAALSIHMLRHTNKADLPFKCNECDKRFRKAIELQEHYNIHSGDKPFACTACGSAFYLRRQLSAHCRRMHPEMKANKVTSTACDICGRVLATKRSLFRHKESHNPTKLYLCDYCGKSLSSAEHLKKHRRIHTGEKPYVCDICGKGFTDSENLRMHRRIHTGEKPYKCDQCPKAFSQRSTLTIHRRGHTGERPYICQICHRGFSCQGNLTAHQKSTCV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00866161;
- 90% Identity
- iTF_00939795;
- 80% Identity
- -