Aequ015471.1
Basic Information
- Insect
- Ametastegia equiseti
- Gene Symbol
- -
- Assembly
- GCA_963989295.1
- Location
- OZ022395.1:14968896-14971470[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.1 12 7.3 6.2 1 23 69 91 69 91 0.97 2 18 7.8e-06 0.00091 20.3 1.1 1 23 93 116 93 116 0.97 3 18 0.00086 0.1 13.8 1.0 1 23 121 144 121 144 0.95 4 18 4.6e-05 0.0055 17.8 3.5 1 23 150 173 150 173 0.96 5 18 0.0011 0.13 13.5 2.0 2 23 180 202 179 202 0.95 6 18 0.00022 0.025 15.7 0.5 1 23 207 229 207 229 0.97 7 18 0.00023 0.027 15.6 0.2 2 23 236 256 235 256 0.96 8 18 5.5e-05 0.0064 17.6 0.2 1 23 262 284 262 284 0.97 9 18 0.00049 0.058 14.6 0.4 1 23 290 312 290 312 0.97 10 18 1.8e-07 2.1e-05 25.4 0.4 1 23 415 437 415 437 0.98 11 18 0.0051 0.6 11.4 0.3 1 23 439 462 439 462 0.96 12 18 0.026 3 9.2 1.6 1 23 467 490 467 490 0.92 13 18 7.2e-06 0.00084 20.4 1.5 1 23 496 519 496 519 0.96 14 18 0.0021 0.25 12.6 1.0 2 23 526 548 525 548 0.95 15 18 0.00065 0.076 14.2 0.3 2 23 554 575 553 575 0.96 16 18 9.2e-06 0.0011 20.0 0.2 2 23 582 603 581 603 0.97 17 18 5.5e-06 0.00065 20.7 0.9 1 23 609 631 609 631 0.98 18 18 3e-07 3.5e-05 24.7 0.3 1 23 637 659 637 659 0.98
Sequence Information
- Coding Sequence
- ATGCCGTCGGACGGAATGTccctggaaaaaaaacgagttatAAGAATCGAATGCACTCCAGAGTACATGATATGGCCAAAGAAGAAAGTTTCTGACGTAGTGATCGTTCGCACCAAGAGAAGTACCTCGAATTTGGATGAGGAAGATAAGGAAGAGGAGACCGTCAAAACGCCGGTGAGAAGAGTGACCAGGACAAAGAAAACCTTTGAGTGCCACTGTTGTCAAAAGACGTTTTTAAAGAAGAGCAATCTGGCCGAGCACCTGAAGCAACACAGGCATAAGTGCGCGGATTGTGGAAAGAGCTTTAGCTTGGAACGCTACTTAGAAACGCACATGGAAAAGATCCACAGACCGCAGCTCTACGAGTGTAGCGTCTGCGACTACAAGAGTAATAACAAAGGAACCCTCAAGAATCATTTCATTCGGCTTCACACAAGTGGGTTTAATTTTTCCTGTGACACTTGCGGGAAGCAGTTCAAAATAAAGAAGGCCCTCAATCACCACATGAAACAAAATCACAGCGGCAATCCTCCCATAGTTTGCGACGTCTGCGGTCATTTCAGTAAAAACCTACACGCCCTTAAGGCCCATATGAAGTACCGCCACTACAAACCGGCTTTCGAATGCAATATCTGCAAGAGAGGCATGACGACGCAGGAAAACTTGAAGCAGCATCTCTCCTGGCacgaaaataaagaaaaggtTGTCTGTCCGACATGCGGGAAGAGATTTCGAGGGCGAGACTTAGACTCTCACATGAGAGTTCATACGGGGATAAAACCATTTCCTTGTTTAGTTTGCGGCAAGACATTCAGGCGGCAAACTGCTCAGGAACAACATGTCCTTATTCATACCGGAAAACGACCTTACGTTTGCGACATATGCGGCCAGGCCTTTGCCCAGAAACCTGGCCTCATTTGCCATCGGAAAAGACATCCTGGCCCTCTACCTCCGCTTCCTGCCGTCTCGATTAAAACTATCGTTACACAATTTGCTAAGGAGTCACAGCCTCTGGACCCATTGAGCATTGCAATTCACTCGGAGGACGGAGAAGAAAATAAGCGCCCCTTGAGAATAGAATGTACTCCAGAATTTGTGATTGGCCTTGTAGAACTGACCAATCAGAGATTTCGTAAGAAGCGTAGAAGCAAGAAAAACTCTATCGCCGTTGGAAAGAGTGTAACCAAAACTAATCGAAGACATCAAAGCTTGGACAGAAGGAAGAATACAGCTGTACAAAGATTCCAGTGCGATTTGTGCGGGAAAACGTATTCGAATAAAGATGCGTTGGTAACACACATCAGGCAGCATGGCTACGACTGCGAGAGATGTGGAAATACTTACGGACTGAAGCGGGAGCTGAAACTACACATGGAAAAAGTTCACGGGCCTCAGATGTACGAGTGTAGTGTGTGCGATTATAAAAGTAATAAGAAATGGACGCTGAAGGATCACTTTGTGAGAAAGCATACCGATGATTATCAGTTCTCTTGTAAATTCTGTGGCAAGCCGTTCAAGATACAGAACAATCTTAAACAGCATATAAATCAAATGCACAGCGGCAATCCGCCGATAGTCTGTGACGTATGTGGTCACGAGAGTAAAAATCTTCACGCCCTCAAGTCCCATATAAAATATATCCATGAGAAGCCTGAGTGGGTATGTAAGATCTGCAAGAGACGTCTGGTGTCCCAAAAAGGACTCCAACAACACCTGAATTGGCATGAGACAAAGGAAAGAGTGGTTTGCGAACAGTGTGGTAAAATGTTCCACATCCCATACGACCTGGAAGTACACATGAGATCCCATACGGGTGTCAAACCTTATTCTTGCACTGTTTGCAATCAGTCTTTTGCGCGCAGAAACACTCTCAGACAACATCTTCTAATCCACACAGGGAAACGACCCTATGTTTGCGATATTTGCGGCAAGGCATTCACTCAGAAGCCGGGACTTACTAGCCACAGGAAATCTCATCCCGGATCCCATCCCCCCCTACCCAGTGTTTACATCGATAATATATTAAAGGGCTTGGCTGATCAGCCAAAGAACGAAGCTAAAGACGGCAAACATTGA
- Protein Sequence
- MPSDGMSLEKKRVIRIECTPEYMIWPKKKVSDVVIVRTKRSTSNLDEEDKEEETVKTPVRRVTRTKKTFECHCCQKTFLKKSNLAEHLKQHRHKCADCGKSFSLERYLETHMEKIHRPQLYECSVCDYKSNNKGTLKNHFIRLHTSGFNFSCDTCGKQFKIKKALNHHMKQNHSGNPPIVCDVCGHFSKNLHALKAHMKYRHYKPAFECNICKRGMTTQENLKQHLSWHENKEKVVCPTCGKRFRGRDLDSHMRVHTGIKPFPCLVCGKTFRRQTAQEQHVLIHTGKRPYVCDICGQAFAQKPGLICHRKRHPGPLPPLPAVSIKTIVTQFAKESQPLDPLSIAIHSEDGEENKRPLRIECTPEFVIGLVELTNQRFRKKRRSKKNSIAVGKSVTKTNRRHQSLDRRKNTAVQRFQCDLCGKTYSNKDALVTHIRQHGYDCERCGNTYGLKRELKLHMEKVHGPQMYECSVCDYKSNKKWTLKDHFVRKHTDDYQFSCKFCGKPFKIQNNLKQHINQMHSGNPPIVCDVCGHESKNLHALKSHIKYIHEKPEWVCKICKRRLVSQKGLQQHLNWHETKERVVCEQCGKMFHIPYDLEVHMRSHTGVKPYSCTVCNQSFARRNTLRQHLLIHTGKRPYVCDICGKAFTQKPGLTSHRKSHPGSHPPLPSVYIDNILKGLADQPKNEAKDGKH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -