Basic Information

Gene Symbol
snpc-4_1
Assembly
GCA_963989295.1
Location
OZ022396.1:11392582-11395401[+]

Transcription Factor Domain

TF Family
MYB
Domain
Myb_DNA-binding domain
PFAM
PF00249
TF Group
Helix-turn-helix
Description
This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 5 0.44 8.2e+02 0.9 0.0 22 45 277 302 265 303 0.77
2 5 2.4e-10 4.6e-07 30.6 0.1 1 43 309 353 309 356 0.95
3 5 2.6e-10 5e-07 30.5 0.1 3 44 366 411 364 413 0.96
4 5 1.8e-09 3.3e-06 27.8 0.0 1 45 419 464 419 465 0.94
5 5 3.9e-13 7.3e-10 39.5 0.3 1 41 469 509 469 510 0.97

Sequence Information

Coding Sequence
atgagcGATTCAGAAGACGATGAATACATTCTCGACGATATAAAAGCCCTACAGGAAGTTTTAACCCAAAAACAAAGGGTGGTGTTAAAAAAAGAGGTTAAATTAGAAGATGAGCAAATTCCGGAAAATCCTAACCTATACGGACCGTCAACATCAGAAACCTCCCGTTTCAATCCGTCGACTTCAAGCCAACCTTTCACATCAAGGGACCAGGATTTATACCAAAGCGATAATGAATCGAATTTAcgaaacgaagaagaagaagaagacgaagaagaagaagaggaagaggataATAACCTAGGAGACTTATCAGACCCCAAGGCGGCGTTAAATCTGAACAGAAAAATCATCAGCCTATTGTCAATGGCTCAAAAGCGGCTGACTCTCCTCCTAGAAGAATGTAAAAGGCGCCAAGTATTGATAGACCAAAAGATCCGGCAAAGAGCGACAGATCCACTCAGTAGAACGCTTTTAACGATCGCAGGGATCCCGTATTTCAAAGACAAGCAACAGTTTCCAGCGCCGAAGAATCAAGACGCTAAAATAAAGGCGAGACGCGGCGAGCTGCAGATCATCAACCTTCCTCGTCCCTTCAAGTGGACGGTAAAGGACCGGAATACGCTATGTAAGGCCATCTACGCAGACGCCAAAATCATGTCGCAAGAGGAAACGGTAAGAAAACAAGAGCCTGTGGACCGAGAAATGGCTCAGAGCGTTGCGGAGGATCCTTTAAGGCTAGAGGACAAAAGAAGGAACAAAAAGATGCCAGTGGAGATGATCCTAAATATGAAACACTTGGTGGGTCCGCTTGGGACAAAGGAATTTGACTGGATGAAAATAGCAGCGACGGATTTTAACGGCAGACATTCAGCAAGCGAATGCAGGGCGATGTGGAATGTTCATGTACATCCGGCCATAAACAAGGGAAAGTGGAAGAAGACTGAGGATTCTAGTCTGAAGGCGCTAGCCGAAGAATACAAATTCCAGAATTGGGATGCGGTCGCTTCACAGTTGGGAACAAACAGAAGCGGATATCAATGCTTCATCAGATTCAACGCGAATTTTAAGATCAACATGCTCAGCAGAAGCAGCGCCTGGTCCAAGGAGGAGGACCAGAAGCTAACTGATACTGTTAACGCCTTGAGAACTGGGAATTTCATTCCGTGGGGAGAAGTCGCAAAGCTGATGGGAGGCAGGAGGAAGCAGCAGATTTATATGCGCTGGAATTACAGTCTGGCCCCCAATATAAAAAAAGGTAGATTCACGGAGGAGGAGGACAGGCTACTACTTCAAGGAGTGGCCAGGTTTGGGTTAAACTTCACAAAAATATCTGTTGCGCTTTTGCCGCACAGAAATACCGCCCAGCTGAACGACCATTACAGGACTCTGATAAACAAGAGGAAAAACGACTGGAGCTGCGAGGACGACATGAAATTGGTAAAGCTTTTCGATAAGCTGGGAAACAACTGGTCAGCAATAGCCAAGGAGTTCACAAACAAGTCTAGAGTCCAAGTCAGACACCGTCATACAGCGATAATCAGATATCTCAGCAGAGGGCTTTCCATCAGGAGTATACCTAGATGGGGACAGAAAAAGGAGGACAAGGATACCCCTGAAGAAGAGATACTGACCAAAGGTGCACGGATGCTCAATGAGATGAGTGAGATGCTTGGGATACAACAGCAAAGAGAAGCTGAAGCACAGAAGAGGAAACAGCTGCCTAGGATCGACCTGGAGCTCAGAGACTATTTCAAAGGAATCTACAGGACATCTTCTACCAAGCGTGGgagaaacaagaaattttattctcaCGAAGAGCTTGAGGAAAGGACTAAGAAGCTTCACGTCATACTGAACATGCTGAACGCTAATCTCGACATTCCCGATGATTTAGAGGAGGAAGTATTCCTGACTGAGAAGGACAAACAGCTGTTAACTTCCTTGAAAGCACGTTTAAGGGATGAAAGCTCCGAATCTGAAGCCAGACAAAAACACATAGAATACATAAGGCGGAAGATGTTCGGATCTGCGAATCCACCAGCTGAGGCAGATCGGTTTATACCGCCATTACCATTCAATGGACAAGTCCAGAGAACTAGAAGAAGAAAGCTTGTTGGTATAAACTACTTTCCAAACGGAGATAAACATCTGGCTGAACCAGATGCCGAACTTGATACACCAGAAGCAATAATATCGTTGATCGGCGGGTCTGACGGTCAACTGAAATTTAAAAAGTTAGAGAAGATATTCATCTGCACAATTGAACAATCACCTGCCTCGAGTACTCGGAATAGGAATCGTCTTGCTAAAACTTTGGACCCAAATGTTCCAAGCACTTCTGGTACAGTTAAGAATTCAAGTAGAAAAATTGGGGAGGAAATTGTTCACAGCAAAAGTCAATCGTCTTCCAaaacaatgaagaaaaagcTCGGAATATACAATCCAGAAATGCTGATACCGCCAAACTATACAACTCTGTTAGGTTTTCGCGGTATATTATTATCCAAGCATTTACTTGAAGCAGAGAGTTCAGAAGAAGATGAATACGAGCAAGAGGAATTTACAATAACGCCGGAGGGTGAAAGggctttgaaattatttgaagatcGTCTAATtaagcttttcaaatttccaatcgAATTGTCAGAAGTAGCGCCGCCTTTGTTACACGGTGTACAAAACGGGGAATTCGATGATATAGACGATAATCGCAcaacgaaaagaaaagtgaGAGAAACTAGCTCTGGGCCAACGCCAGCTAAGAGAAAACCACAACTCCAAAACGTTAGCATTGAAAAAATACCAGAGGCCCAATGA
Protein Sequence
MSDSEDDEYILDDIKALQEVLTQKQRVVLKKEVKLEDEQIPENPNLYGPSTSETSRFNPSTSSQPFTSRDQDLYQSDNESNLRNEEEEEDEEEEEEEDNNLGDLSDPKAALNLNRKIISLLSMAQKRLTLLLEECKRRQVLIDQKIRQRATDPLSRTLLTIAGIPYFKDKQQFPAPKNQDAKIKARRGELQIINLPRPFKWTVKDRNTLCKAIYADAKIMSQEETVRKQEPVDREMAQSVAEDPLRLEDKRRNKKMPVEMILNMKHLVGPLGTKEFDWMKIAATDFNGRHSASECRAMWNVHVHPAINKGKWKKTEDSSLKALAEEYKFQNWDAVASQLGTNRSGYQCFIRFNANFKINMLSRSSAWSKEEDQKLTDTVNALRTGNFIPWGEVAKLMGGRRKQQIYMRWNYSLAPNIKKGRFTEEEDRLLLQGVARFGLNFTKISVALLPHRNTAQLNDHYRTLINKRKNDWSCEDDMKLVKLFDKLGNNWSAIAKEFTNKSRVQVRHRHTAIIRYLSRGLSIRSIPRWGQKKEDKDTPEEEILTKGARMLNEMSEMLGIQQQREAEAQKRKQLPRIDLELRDYFKGIYRTSSTKRGRNKKFYSHEELEERTKKLHVILNMLNANLDIPDDLEEEVFLTEKDKQLLTSLKARLRDESSESEARQKHIEYIRRKMFGSANPPAEADRFIPPLPFNGQVQRTRRRKLVGINYFPNGDKHLAEPDAELDTPEAIISLIGGSDGQLKFKKLEKIFICTIEQSPASSTRNRNRLAKTLDPNVPSTSGTVKNSSRKIGEEIVHSKSQSSSKTMKKKLGIYNPEMLIPPNYTTLLGFRGILLSKHLLEAESSEEDEYEQEEFTITPEGERALKLFEDRLIKLFKFPIELSEVAPPLLHGVQNGEFDDIDDNRTTKRKVRETSSGPTPAKRKPQLQNVSIEKIPEAQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-