Basic Information

Gene Symbol
-
Assembly
GCA_933228735.2
Location
OW121686.1:7328405-7335412[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 13 0.77 53 4.6 0.8 1 20 861 880 861 882 0.94
2 13 0.019 1.3 9.6 0.7 2 20 891 909 890 911 0.93
3 13 0.051 3.5 8.3 0.3 3 23 981 1001 980 1001 0.97
4 13 0.19 13 6.5 2.6 2 22 1104 1124 1103 1124 0.95
5 13 0.74 51 4.6 0.4 3 23 1142 1162 1140 1162 0.95
6 13 8.7 6e+02 1.2 0.1 1 11 1173 1183 1173 1189 0.84
7 13 0.00048 0.033 14.6 0.4 1 21 1239 1259 1239 1260 0.93
8 13 0.031 2.2 8.9 0.0 2 20 1284 1302 1283 1306 0.89
9 13 0.011 0.76 10.4 0.3 1 23 1797 1819 1797 1819 0.96
10 13 5.2 3.6e+02 1.9 1.6 1 23 2034 2057 2034 2057 0.92
11 13 0.64 44 4.8 2.4 1 23 2231 2255 2231 2255 0.94
12 13 0.18 12 6.5 0.3 1 23 2272 2298 2272 2298 0.91
13 13 0.34 23 5.7 0.9 3 20 2302 2319 2301 2321 0.94

Sequence Information

Coding Sequence
ATGGAGACCGCTACAAAGAAAACCAGGTCGGGCGTGATCCACGCGGCTTCGGACAACCCGCTCGAGGAATGGCTGCGCGTCTGCAAGCCTCTGTCGGTGAAGATGACACGTTTGCCGATGTCGGTGGTTGACAAGTACGCGGCGAGCGGCCCGGCGGCAGAGGCGAAGACGAAGAATCGTCCCACCAAATCACGGCAACAGAGGTGGAGGAACGGCTACACCGACGCCGCTAAGCTGTTCAAGCGACGTCGGAAGATGTATCGAAAGAGGGTGTTGCAATTGAAGATGTCGGAAGCCGCGGCGAAGAACCAAATGATCGAGGGAGAAACGCTCGATCCGGACAGGATATCCGCGattaaaatattcaattcCGACGTCCTCGAGGAAGCTTCTTCGGAGCAAAAGGAGGCCACCGTTGAGAGCGGAGAACAAACGACCGTCAACGGGACTCAGTCGGAGACGCACGAGAGCGGATTACCATCGAGTTCGAACGAAGCTCCTTTGATCGCGGAGCCGAACGAAAATATTCCCGCTCCACCAGCCGACACGATCGGCACTTGCTTGCGCcgttcgatcgttcgcgaCACGGGAAAGAGGAAAAGGCCCTCGCGACGGAGCGACACTGAGACGGAGGAGTCGAACAAATTTCTGCAGGAttcgaaaaaatcgaaatccTTGGTCGATGAGGTTTTACCTTGCGACGAAAAATCATCAACGCGAGAAAGAAAGACAAACGAAATCGTAACGAAGCGGGTGAAGCCCGTGAGAATCAAGAAACACAATCCGAAGTCTGTTCGTCGGCGAGTAAACAACCCGAGAGAAGCGAGGATATTTCTGAGCAGGCTTGAGGATTCGCTCGATCCTCTGGTTCGACGGTGGAATGAAAGAAGGAGGCTCTTCAGCGAAGCTGGCGCGACAAcggaaaatatcgatgaaagATCTCGACTGGCGGCTGCGGATGAGTTATCCAGGCAAGAATCGAGCAAAGGAGAAACTTTCGGTTTACCGACGATCAACGTTGTCGACCTGGAGGTCAGCAACAGCTCCAACGCAACAGCGGCAACGGTCACGTGCGCAGCACCCGCATCGACAGATGTGGAAACGCTCATCGAGGGAACAAAAACATTCGGACCACCGACGGCTCTGGACGAAGCGACCGACGATGAAAACGACGAGGAGATAATGGAGTTTCTTCGCTCCCCGAGAAAAGTTATACCGCTTATCGATAGCTCGAGTTCGGACACGATGTCGTACTACGAGGATTCTCGTAAGACACCATCGGTGCGCAAAATTACGAGATCGCAGACGGTGATGGGGACGAACGTCGAAAGTGTCTCCGACTCCGAAGAAATGGCGACGATTCGTTCTCTGAGCAGGAACGCCGAGACTCCTTCCATAACAAGATCGAGTCCTGAGAGGACGCGTCCGGAAACGAGAATGTCCCGAATGTTGCGTCTCGCCAATACATCCGCGATGGACGGCACGGATCTCGAGAGTTCCCGGGACGATCACAGCGAGACTCCCAAGAGTCCGCGTTCTCGTGGCCAAAACCCCAGAAAGACTCCGTCGTTGCGTCTCAGTCTGACGAGGAATTCGATGGACAGCGAGGCCTCGATAAGCGTGATCGAGCGTCCGTTGTTCCGTAAAAAATCGTCGCGACTCGTGATCGACGACTCGAGTTCCGAGAGCACGTACAATCCGGGCGAGGCTCTCACCGACAtgttcgacgacgacgtgccCGGCCCGACGTCAACGCAGGACGAAGCCACCGATGTCGCGACCGAGGAGACGAATCCCGCTGTTGATCTACACATCGACGAAGACGACAACGAGGTGGAAGCCATGACCGAGGTGAATTGCGACGCCTCGCCGATCGACGACTCGTCCGAATCGTCGAACCCTCCGTCGAGTCAACGGAACGACGTTCTCACCGCGAGAAAGAAACTTACCGCACTGAACGCGATGGTAGTATTAACGAGACTCGAAGACCTCGACGACATATCCGAGGGCAACAGATATTCGGAAACCGAGATGGAGCTCAGAACGGCCGAGGATTCCGAGTGGCCGAGAGAGCGTTCTTCCGGCGCGACAGCCAACCTAGCGAGCGGCGACTCGCCTCTCGTCGATCCGAATTCCGACGACGGTCAGACTCCGGATCCGCTCGACATAAACAGGGATGACGAGCGGAGCCCGCCGAGCGAAACTATAACTCCGTTCGCCGCCGTCTTCTGTCGTACGTTCGGTAAATTGGGAAGCAAGGAGGAGGTTCCGACGAGATCTTCGCCGAGGAAGTTGCCGCGTGTCGATTATTTCCCGAACGAGGAGGTCGACGCGAGATGGTCGCAGGACACGGAGTCGGACGTCGAGCTGTCTCTCATAttggaggagagcgagagaacgcgCGAGAATTCCATCGACCGCTCGCAAACTTCGGGTATCGGAGATTCTTCGGTGAATTCGTCGTGCGCGGCGGCCGAGGGTGTCCTCACCTCGGCGAAGGGAACCGGCGACGCCGCGTGCCACAATCCCGACGAGCGCGGCGAGCGCCCCAGCGACGAGGCCGAGACTCGGCAGGCGACGCACAAGTGCGTTACCTGCAGCAATCTCTTCAAAAACGCCGAGCTGCTGGAGCAGCATCACGCCTCGAGCGCCGGTTGCAAACCCGAGCTGCGCTGCAGCGCGTGCCAGACCACCTGCAAGACACCCTCGGAACTGAAGAACCATCGGGCCGGTTGCGCCGAAAAAATATCCGAGAAACGCAACTCCGTCGAAGAAACGACGAGCAACGAAGCGGAGACCGACAACAATCAAACCCCGCCCGAGAACTACGCTTCGGTGTGGTTACTCTCGAAGACCGATCCCAAGAAGTCCCAGGCTATGAAGAAGGTATCGAAGAAAGCGCGGAAGAACACGACCCGCGTGCGCGGCGACAATCCGATATGCAACGTTTGCTCGAGGAACTTCGGTACGACGCAGGCTTTATCGGAGCATATTTACAAGCACAGTCCGGAGGAGCTGCAGGAGGCTTACAGGACGTGCAAGGCGAAGATGTTGGCGGATTTCGGGACGACTCGCGCGGCTCTGGAGACGAACGGCGAGGGAGCGGACAGCGGCAACGACGTCGACAGCACCGTCGCTGTCGTCGACGGTGCGGCGGGTACGGAGCGAGGATCCGCGACGCAAGCTTCCCGTGGCACCGGCGTCGTCACCGGTGTCGACAGGGACGCCCTGGCGGCGACGGTCTGTCCCTGCCACAGGCAGATCCACCCGAACACCGAGGAGAACGATCTCCAGATCGAGATGGTACTCGTGTGCCAGCACTGCCAGGTGCTCTTCAGGCGCAGGGAGTGCTTCGAGGTGCACTATCGCACGAGTCCTCGTTGCGCCAACGACCGCACCCGCGGCAGATGGCCGAGACTCTTCTGCGCCAGTTGCCAACTGACTCTCAACAGCTGGGCGGACATGCGACATCATCTCGAGGTCCACGCGAGCGTAAACGCCGAGGGCACGGTCAGGTTCGTCTGCAACATCTGCAGGGTCGTCTTCGTTGGTTTCGGAGCGCTCTTCTACTATCACTGGTTCAGCCACCTCAAGGACACGATGCTCGTCGCGAGCCGCCACTCCTTTCCGAAGATATCCGTCCAGCCCATCGACGGTCTGGCCAAACTACCGATCGGCGCGTCGCCCGACGAATCCTACATATGGGTCGCCGAGCACGTTTGCGCCGACTGCAAAAAGCCATTCTCGACGAGGCGCGATCTCGAGCTTCATCGCGAGACGGACTCCTGCGTGAAGACCGTGAACGTCGAGATAAGAAAAGATCCCAACGACGGCAACGACTCGCAGTGGTACTGCGACGTTTGCGAAATCGTGttcgacgatcgcgacgagCTGAACGATCACGGAGCCGATCAGCACGGTCGTCACTACACTTGCGTTTCCACGTCGCCGAAGCAGAAGACTTTCATGTGCACGAAATGCTGCGCCATGAGGAAACGCGTCAAGGACATCGAGGAACACTGGAAGTCTCATCCGCAGCACAACTTGTGTCAGTTCGAGATGGAGAATCGTCCGATAAGCGCCAgacccgacgacgacgacgtcgctgTTATTTCGCCGTTGGCCGGGGCGAACGAAGTCGTCGGAACTTTGCCGGCGAGGGAGAGCGGCGGCGATCGGGATTCGCCGTCGGACGATTCGGCGACGATCACGAAGAATGGAACTTCGAGCGACGAGTCTCGCGGCTGCGAAGCCGAGGCTGCGAAGAGGAGCGTCGAGAAAGCCGACGCTGCGCCGGAGGTCGACATTGTCTTCCAGACTGCCGTGGAGAATCTCGAGAGCAACGCCGGTGCGGCTAACGAGAAGTCTTCGGCCGCTCGAACGCCAACCGACGTGTCGGCGAAGAAACCCCAGTCACTGATACTCTGTAATTTGTTGACAGGAACTCCGTCGGAAGCGAAGAATATCGACAAGCTGAAAACGCGGATCGGAGCCCTCGAGGATCCTTTCGTGAATGTCGTTATGTCGGACTCTTCGAACGAGAAATTATCCGCTTCGTTGGTCATCGACGAATCCTGCGATAAAACTCGCGCCGATTCGCACACGGAGTCTTACCAAATATTGATGATGGACAGCAATCCGAAGTCCAACTCGGGACCGATAAAAATGGTTTTCGGTAGAAAGAGCGCGGGAAATTCGGTGGATAAGCCCAAGCAGCCGAAAACGAGCGAATCGAAGAAGGTGTCGTCTTCGAAATCAACGTCGATCGGGGAGCGCAGCGCGAAGGAAGTCGCGAAGAAAACTTCCGTGAAGAAGGCAACCGTCGCCGGTTCGACCGTGAGGAAAGCGAGCAAGACGACATCGATGAAGAggaacgacgagagaaaacCGAAGGGCAACGAGGCGAAGCTCTCGCTTCCCGCGTCGTCGAACAATCGGGTATCACCCGAAGTAATCGACATAGTCGAGGAAATCGACGTGACCGAAGAGGCGAGTCGAGTTCCGACGGAAGAAAAGCCATCGAGCAAAGTTCCATTGGCGAAAGCTAAAGTAAAAACGTACGTCCGAAGCAAGAAGCCGAGCGTAATAAAATTGCACGAGGGTGTGGAGTCGATGAAGATCGGTTCGGTGAAGGGTTCGTCGGGATCGAAGAAGAAATCTTCGAACAATTCCTCGGGATCGGCGATGATTACCTCGTCGAACGACTACGATAAATCGGACAACTCCGATACggcttcgctcgctcgccgagaGCCCAAGCTCTCGTTCGAGGAGGCTCGCTACGCGGCTCAATCGCTGTCGAAGAACGCCAGCGACGATGCGGCGGTCGCGAAGAAGCAGGGTTTTCTTCGCGTGAAGAATCTCGCGGAGCTACAAGCCGTGAGGCAGCACGTCTGCCCGCTCTGCAGCGCCACCTTCGAGTCGCAAGCCTCGCTCGACGAGCACAAGCAGCTGCACTATCCAATTTCGCTCGGCAAGGCGGTCGGGAAAAATCCCAAAAGAATGACCGCGGCACTCGTCCTGCCGGACGCTTCAGAACGTCCCAAGACGCCCGTCGTCGTTCCATCGAAGAACGTCACGAGGACACTGTCGCAGTCTTACATCTCGCAGAGATTCGCGGCGCTCACACCTGCGCCGAGCGCGAACACGGCCGGTGTCGCCGGTTCCACGGAATCTTGGATTTACAACGCGAATCATCAAAACGCACCGGTCTCGAATACACTGACGTTGAACGTGACGAACGAACTGGGGACGATCCTTTCGAAATACAACGTGAACACGGACGCAACCAAGACCGTGATAACGTCGACCGCTGGCATTTCTCAGCCTCAGCAGAGCTTCGTCGTTCAGTCGCAGCCGACCAACACGATTATTGGTTACGTCACCGTGCCGGACGTGAATCGACAGCTTCCCGAAGCTCGCAATCCCGGACAGATGGGTTATCACGTTTTACCTGCCATGGTCGCACCGTCGGCTCAGGGCAACAGGCAACACACCGCCGTTGCCTCCCAACAGAATTCTTCCAGCAACAACCTTCCAACGAGCGGTCTGGCCGTCGTGTCGCCGCTCGCCACACAACAGATACAGGGTctgaataaatatatttgcaCGATATGCAGAACGTTCCGTTGCGACAGTCTCAATGCATTGAACGAGCACATAAACAAGCATCTCGTCGGTTTCAACAACACCGGCACCGTTCAGAACACGACTCAGCCGTCGATCTCGACGGTCATCGTACCGCAGGCCTCGACCTTCGCCACCGTCAACCAAGTCGTCTCGAACACCATCACCGACAACACGGCGATAGGCACGAAAACTACGAGCGAGAGATTGGTCGTCAACAATTGGATACTGTCGAATCCGACCGAGTTGTGGACGACGTCGAATTTTAATCAACAATCCGGATCTTCCGTTCTGCCGATTGCCACCCAATCGATTTTGCCCTCGACGGTGCAAAATTCGAACCGGAACGGCACGAATCCATCGAAATCGTCGCCGGCCTGGAACGCAACGGCTTACAACCAGCCGGCAGCACCTGCGGCGGACGCGATCGTGAAGGAATCGATCGCCTCGCCGACCACCCAAAATCCAAGGAACAACAACGGTACCGGCGCGTCGAAACAATCTCCGGCGTGGCCTGCGACGACTTTCAACGGCACCGGCGACTCGAACGGCGGGCAGATCGTTTACCAGTGCATGATATGCAAATCTTCGATGTACACCGACCACGAGCATCTGCGAAGGCACGTACTCATTGTTCACGGAgtcgagaattttttgaaatgcCGGACGGAAAACGTGCAGAAGAGTTACTTCTGCAATCGGTGTCCGAACGGCTCGGCGCCGTTCGATTCGCAGTCGAAACTCCGCACTCACCAGGAGACCGATCACTCGAACGCCTGTCCGTCCTGCCACCGAAACTTCTACAGCTACATATTTCTCAACGATCACATGGAGCATTGTCGCACGAACAACAATCACGCTAATTTCGACAGCAACTGTTGA
Protein Sequence
METATKKTRSGVIHAASDNPLEEWLRVCKPLSVKMTRLPMSVVDKYAASGPAAEAKTKNRPTKSRQQRWRNGYTDAAKLFKRRRKMYRKRVLQLKMSEAAAKNQMIEGETLDPDRISAIKIFNSDVLEEASSEQKEATVESGEQTTVNGTQSETHESGLPSSSNEAPLIAEPNENIPAPPADTIGTCLRRSIVRDTGKRKRPSRRSDTETEESNKFLQDSKKSKSLVDEVLPCDEKSSTRERKTNEIVTKRVKPVRIKKHNPKSVRRRVNNPREARIFLSRLEDSLDPLVRRWNERRRLFSEAGATTENIDERSRLAAADELSRQESSKGETFGLPTINVVDLEVSNSSNATAATVTCAAPASTDVETLIEGTKTFGPPTALDEATDDENDEEIMEFLRSPRKVIPLIDSSSSDTMSYYEDSRKTPSVRKITRSQTVMGTNVESVSDSEEMATIRSLSRNAETPSITRSSPERTRPETRMSRMLRLANTSAMDGTDLESSRDDHSETPKSPRSRGQNPRKTPSLRLSLTRNSMDSEASISVIERPLFRKKSSRLVIDDSSSESTYNPGEALTDMFDDDVPGPTSTQDEATDVATEETNPAVDLHIDEDDNEVEAMTEVNCDASPIDDSSESSNPPSSQRNDVLTARKKLTALNAMVVLTRLEDLDDISEGNRYSETEMELRTAEDSEWPRERSSGATANLASGDSPLVDPNSDDGQTPDPLDINRDDERSPPSETITPFAAVFCRTFGKLGSKEEVPTRSSPRKLPRVDYFPNEEVDARWSQDTESDVELSLILEESERTRENSIDRSQTSGIGDSSVNSSCAAAEGVLTSAKGTGDAACHNPDERGERPSDEAETRQATHKCVTCSNLFKNAELLEQHHASSAGCKPELRCSACQTTCKTPSELKNHRAGCAEKISEKRNSVEETTSNEAETDNNQTPPENYASVWLLSKTDPKKSQAMKKVSKKARKNTTRVRGDNPICNVCSRNFGTTQALSEHIYKHSPEELQEAYRTCKAKMLADFGTTRAALETNGEGADSGNDVDSTVAVVDGAAGTERGSATQASRGTGVVTGVDRDALAATVCPCHRQIHPNTEENDLQIEMVLVCQHCQVLFRRRECFEVHYRTSPRCANDRTRGRWPRLFCASCQLTLNSWADMRHHLEVHASVNAEGTVRFVCNICRVVFVGFGALFYYHWFSHLKDTMLVASRHSFPKISVQPIDGLAKLPIGASPDESYIWVAEHVCADCKKPFSTRRDLELHRETDSCVKTVNVEIRKDPNDGNDSQWYCDVCEIVFDDRDELNDHGADQHGRHYTCVSTSPKQKTFMCTKCCAMRKRVKDIEEHWKSHPQHNLCQFEMENRPISARPDDDDVAVISPLAGANEVVGTLPARESGGDRDSPSDDSATITKNGTSSDESRGCEAEAAKRSVEKADAAPEVDIVFQTAVENLESNAGAANEKSSAARTPTDVSAKKPQSLILCNLLTGTPSEAKNIDKLKTRIGALEDPFVNVVMSDSSNEKLSASLVIDESCDKTRADSHTESYQILMMDSNPKSNSGPIKMVFGRKSAGNSVDKPKQPKTSESKKVSSSKSTSIGERSAKEVAKKTSVKKATVAGSTVRKASKTTSMKRNDERKPKGNEAKLSLPASSNNRVSPEVIDIVEEIDVTEEASRVPTEEKPSSKVPLAKAKVKTYVRSKKPSVIKLHEGVESMKIGSVKGSSGSKKKSSNNSSGSAMITSSNDYDKSDNSDTASLARREPKLSFEEARYAAQSLSKNASDDAAVAKKQGFLRVKNLAELQAVRQHVCPLCSATFESQASLDEHKQLHYPISLGKAVGKNPKRMTAALVLPDASERPKTPVVVPSKNVTRTLSQSYISQRFAALTPAPSANTAGVAGSTESWIYNANHQNAPVSNTLTLNVTNELGTILSKYNVNTDATKTVITSTAGISQPQQSFVVQSQPTNTIIGYVTVPDVNRQLPEARNPGQMGYHVLPAMVAPSAQGNRQHTAVASQQNSSSNNLPTSGLAVVSPLATQQIQGLNKYICTICRTFRCDSLNALNEHINKHLVGFNNTGTVQNTTQPSISTVIVPQASTFATVNQVVSNTITDNTAIGTKTTSERLVVNNWILSNPTELWTTSNFNQQSGSSVLPIATQSILPSTVQNSNRNGTNPSKSSPAWNATAYNQPAAPAADAIVKESIASPTTQNPRNNNGTGASKQSPAWPATTFNGTGDSNGGQIVYQCMICKSSMYTDHEHLRRHVLIVHGVENFLKCRTENVQKSYFCNRCPNGSAPFDSQSKLRTHQETDHSNACPSCHRNFYSYIFLNDHMEHCRTNNNHANFDSNC

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00721651;
90% Identity
iTF_00721651;
80% Identity
-