Basic Information

Insect: Amblyteles armatorius
Gene Symbol: Snai1
Assembly: GCA_933228735.2
Location: OW121688.1:1193528-1196663[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 4 2.7e+02 2.3 0.2 2 16 67 81 66 83 0.81

2 13 0.0004 0.028 14.9 0.1 1 23 256 278 256 278 0.95

3 13 2.9e-05 0.002 18.5 1.2 1 23 286 308 286 308 0.98

4 13 4.2e-06 0.00029 21.1 0.3 2 23 316 337 315 337 0.97

5 13 6.9e-06 0.00048 20.4 0.9 1 23 343 365 343 365 0.98

6 13 2.9e-05 0.002 18.5 2.2 1 23 372 394 372 394 0.98

7 13 8.1e-06 0.00056 20.2 0.6 1 23 400 422 400 422 0.96

8 13 1.3e-05 0.00092 19.5 0.2 1 23 428 450 428 450 0.98

9 13 6.9e-07 4.8e-05 23.6 1.2 1 23 456 479 456 479 0.96

10 13 3.6e-06 0.00025 21.3 0.5 1 23 485 508 485 508 0.96

11 13 5.5e-06 0.00038 20.7 2.8 1 23 514 536 514 536 0.99

12 13 8.9e-05 0.0061 16.9 0.4 1 23 542 564 542 564 0.94

13 13 0.00062 0.043 14.3 0.0 1 23 570 594 570 594 0.91

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	4	2.7e+02	2.3	0.2	2	16	67	81	66	83	0.81
2	13	0.0004	0.028	14.9	0.1	1	23	256	278	256	278	0.95
3	13	2.9e-05	0.002	18.5	1.2	1	23	286	308	286	308	0.98
4	13	4.2e-06	0.00029	21.1	0.3	2	23	316	337	315	337	0.97
5	13	6.9e-06	0.00048	20.4	0.9	1	23	343	365	343	365	0.98
6	13	2.9e-05	0.002	18.5	2.2	1	23	372	394	372	394	0.98
7	13	8.1e-06	0.00056	20.2	0.6	1	23	400	422	400	422	0.96
8	13	1.3e-05	0.00092	19.5	0.2	1	23	428	450	428	450	0.98
9	13	6.9e-07	4.8e-05	23.6	1.2	1	23	456	479	456	479	0.96
10	13	3.6e-06	0.00025	21.3	0.5	1	23	485	508	485	508	0.96
11	13	5.5e-06	0.00038	20.7	2.8	1	23	514	536	514	536	0.99
12	13	8.9e-05	0.0061	16.9	0.4	1	23	542	564	542	564	0.94
13	13	0.00062	0.043	14.3	0.0	1	23	570	594	570	594	0.91

Sequence Information

Coding Sequence: ATGACGGCGaattccacaaaaaaaaccacccaCTGCTTGATATGCAACAGCAAAGTCGGCGTGTCGACTCGCAACAGCGTGAGAATATTCGACGAGGCTCCACCTCAGTCGGCTGTACATCACGAGCGGCGGCTCATCCAGACTATATGCTGCGTGCTGAAGAAAGAACTCGACGAAGAGTCTGTACATTCTGTAGTCgtgtgtaaaaaatgttacaaactATTCACTGAGTTCGAAGAACTGGAGAATAGAATGGCTGAGATAAGAAAGGACGTGCATGAAAGCTACGAGAATACTCTCAAGAAAGTTACGCCCGAGATACCGATACAGGAGGAGTACAACGACCATGATTACATAGATAATTCCGACGGTCAAATGGTGGAAGCTTTGGATTCTAAATTCGATGAGAAGGAGGACAGAGGGTCTTCGCCTGTTAAAAATCTGACCGACACTGAGAACATACCTGAGTATTTGGTAGAAGAAATGGACAAGGCACACGTGGAAAACGTGGAGTACATCGAGGAACACGACGAAATACCGTTGAAAGTAGAAACATCGGTCGTAGAGGATAAAAATTCCGAGACGAAGAAGAGCCAAGCAAAGAAAGGCAAAGCGACGGTAAAGATCGAGGATACTCAGGAACAAATCGTGACGCGTGACGGTACGGATTACACGTGTCTGTTGTGcacgaacgacgacgagagattcGTCGGCGACGCCAAGGAGATTGTGTCGCACGTTAAAGGGGTGCACGAGTCGCGACTGTACATTTGTGATATATGCGGTATGGATTTTAAGAAGAGAAACGAATTGTCGATTCATCTGGACGATCACGTCGCCAAGGAGGAGGGAGACTTTCAGTGTGAAGTCTGCAATAGGATATTCAGTAATTTACGACTGTTCAGAATTCACAAGCGAATACATTATCCACAAGTTAAATCTTGGCCCTGTTCGACTTGCGGCAAAAGATACAGttcgaaaaatttattggaaGAGCACATAAACACGCACACCGGTCTTCGGCCGTACATGTGCGAAACTTGTGGCAAGGACTTCGCCTCGAAGTACACTTACAAGGCTCACGCGAAGACTCACGAGGTTCGTCCGAGACCGTTCGAGTGCACTCAGTGCAACAAGTCCTTCCTGAGTCAGCAGAATCTCAATCAGCACGAGCGAACTCACAACGGTGTGAAGGAATACGTGTGCCATCAATGCGGCAAGGCATTCGGCTCGGCCCACAATCTCGAAGTTCACAACATCGTGCACACCGGTTATAAGCCTTACATATGCAGAATGTGTGGCAAAGCTTTCGCGCGAAAAGCAGAGATCCGAGATCACGAGCGTACTCACACCGGCGAAAAGCCCTATCAGTGCGAATTCTGCGGAGCCACGTTCAGTCAACGATCGAATCTTCAATCGCACAAACGCGCGACCCACTACAACGACAAGAGATACAAGTGCGACGATTGCGGTAAAGGTTTCAAGAGAAGAAGACTTCTTGATTATCACATAAAAGCCGCTCATACCGGCGAGAGACCCTACAAGTGCGAGACTTGCACCGCAACTTTCGTGTATCCGGAACACTTCAAGAAACACATGCGTATTCATACAGGAGAAAAGCCATACTTGTGCGAGGTCTGCGGAAAAGCATTCAACAGCCGCGACAACAGAAACGCTCATCGTTTCATTCACAGTGATAAAAAGCCGTACGAGTGTCTCGTCTGCGGTATGGGATTCATGAGAAAACCATTGTTGTACGCGCACATGCAGATCCAGggtCATCTAAACGACACTATAGTCGTAAACCAGCCGAGGTTAACTACAGAGGATGATCACGTAATTTCCATTCCCGAGGATGACGTTGAGCTGCTTATGGACGAAACGGAGACCGAACAGCTCGAAGAAACGGAGCTGTACGTTGCCGAACTCAAGGAGCACGTTATTATTCAGCAGGGTGGAGAGCACATTTATCAGGAAGAAAATGTTCTTAGCATACCAGCGGAAGAGGGTATGGAgcaggaggaggaagaagatcatcatctcgtcgtcgacgggcAGATAGCCTTTACGGACACCGAAGTGATGCAGTGCAAGCCCGAGGATTGCGAGCAACAGGTCGAAGAAGTTTACAGTTACAACACCGGTGAGGACGGTGAAACGATAGTTGTGCCAGCGTCGTCCGATTACAAAGAGATCGTGGGCGACAAGAAGAACTCGGTGCGACTTGTACAGATACGAATGCCATCGTCGTCGGCCGGTGAAGCGAGAAGTTGGCTCAGCCTCGTGCAGAATACATAA
Protein Sequence: MTANSTKKTTHCLICNSKVGVSTRNSVRIFDEAPPQSAVHHERRLIQTICCVLKKELDEESVHSVVVCKKCYKLFTEFEELENRMAEIRKDVHESYENTLKKVTPEIPIQEEYNDHDYIDNSDGQMVEALDSKFDEKEDRGSSPVKNLTDTENIPEYLVEEMDKAHVENVEYIEEHDEIPLKVETSVVEDKNSETKKSQAKKGKATVKIEDTQEQIVTRDGTDYTCLLCTNDDERFVGDAKEIVSHVKGVHESRLYICDICGMDFKKRNELSIHLDDHVAKEEGDFQCEVCNRIFSNLRLFRIHKRIHYPQVKSWPCSTCGKRYSSKNLLEEHINTHTGLRPYMCETCGKDFASKYTYKAHAKTHEVRPRPFECTQCNKSFLSQQNLNQHERTHNGVKEYVCHQCGKAFGSAHNLEVHNIVHTGYKPYICRMCGKAFARKAEIRDHERTHTGEKPYQCEFCGATFSQRSNLQSHKRATHYNDKRYKCDDCGKGFKRRRLLDYHIKAAHTGERPYKCETCTATFVYPEHFKKHMRIHTGEKPYLCEVCGKAFNSRDNRNAHRFIHSDKKPYECLVCGMGFMRKPLLYAHMQIQGHLNDTIVVNQPRLTTEDDHVISIPEDDVELLMDETETEQLEETELYVAELKEHVIIQQGGEHIYQEENVLSIPAEEGMEQEEEEDHHLVVDGQIAFTDTEVMQCKPEDCEQQVEEVYSYNTGEDGETIVVPASSDYKEIVGDKKNSVRLVQIRMPSSSAGEARSWLSLVQNT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00414498;
90% Identity: iTF_00058123;
80% Identity: -