Basic Information

Gene Symbol
Trerf1
Assembly
GCA_933228735.2
Location
OW121690.1:265961-278565[-]

Transcription Factor Domain

TF Family
MYB
Domain
Myb_DNA-binding domain
PFAM
PF00249
TF Group
Helix-turn-helix
Description
This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 1.3e-09 9.8e-07 28.8 0.0 2 46 1108 1152 1107 1152 0.96

Sequence Information

Coding Sequence
ATGACGAACAACATAGAAAGACAGGAAGAATGTGAACGTCCGCGCATTCACGATTCTTCGAAGTCTTTGATAGAAACTtccgtcgtcgacgagctAGAGCCGTCGGGAGTTTCAGCTTTAGTGAAACTTTACGTAATTAAGcagcagcaacagcaacaagctcagcagcagcagcaggtgCAACAagctcagcagcagcagcagcagcagccgcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcaacagcagcagccgcaacagcagcagcaacagcagcaacagcagcagcagcagcagcagcagcagcaacagcagcagcagcagcaacaacaacagcagcaacaacagcagcaacaacagcagcaacaacagcagcaacaacagcagcaacagccgtCGCAGCCGCCGCAGCCGCCGCAGCCGCCACAGCCGCCACAGCCGCCACAGCCGCCACAGCCGCCGCAACAGccgcagcagccgcagcagccgcagcagccgcagcagccgcagcagcagcaacagcagcaacagccgcaacagcaacaacagcagcagcagcagcagcagcaacagccgtCGCAGCCGCCGCAACCGccgcagcagccgcagcagccgcagcagcagcagcagcaacaacagcaacaacaacagcaacagcaacagcaacagcaacaacaacaacagcagcagcagcaccaaaCGGCGCAGACCCAGCAGGCTCATCAGACGAACTCGCCCGGAAGCGGAAACGCGGGAAAGGGAAGTCCATCCCCTGCAAACTCGACGTCACCGGCCGGTATTGTCACCGCCGTCCCGAATAAGCCTCAGGCCGAGCCGAAACCAGTCGAATGCAATCTATGCAGTCGAACGTTCAAAAACATACCGGCTCTGAACGGGCATATGAGATTGCATGGCGGTTACTTCAAGAAGGACGAGAACAAGAAAACGGAAAAGAAGGAAACGCCGGGGCCTCCTCTTCAGACGGCATCGGTTAACGTGAGGGCGCTGATCGAGGAAAAgattatacagaaaagaacgACAGCAACGGAAGCGAACAACAGTAATCAGGCTCGAGCGAATGCAGTATTCACAAATCAGTCTGATGGCTCTACTCACGTTATCGGTAAAACGAGCTTCGTCGTTCCCGCGCCACCGCCTCTCGCCACCGGTGAAAAGATCCGGAGACTCTCGGACACGGAACACTTCCGGCAACCAAATGTCACGGTCAACGGTCATGCCGCTGTCCAGAAACAACTGCAGGAGGCGCAGACACAGGCACAAGCGCAGGCTCTTGCTGACATGATTCTCAAGGGTACGACAAAAATGGCAGTGAAGAGAGCCACTTCCGATCCAGGTCAAAGAGTTCAGCTGACTTATCAGAGTTCGGTGACGTCGACGACTGCGacgcagcaacaacaaccgaGCCAACCCCAGGCACCGACGCAACCGGCAGTAACCGAGAGTTTCACGATGACCGGATATTCCGAGGACGGGGGCTATTTCAGCCCTAGTTTGCAGGACGAAGTTTTCCAGCAAGTAACCGCGGTACCGGACTCCGTGCTACTTCACGCGACTCAGTTGGATTCCATTCAGTTTCAGACGTCGAGTCTCCTGCAGGAGCAAACGTCGGACCAGTTGCAGGACATAACGCTCGAGGATCGTTTCACATCACAACACACAGTAAATCCGGACCTTCGGGCTCTAGTGAACTCGCCGTTGCCCGATTCATTGGCGGAGTTCAGTACATACGGTGCTCAGTATACCGAGAGCCCTCACACATTGCCGGCTCAGTCACCGTTGCCTTCGCCCCTGACGAGACACGACAGTCCAAGTTTTACCTATCCGACACCACCGGCAAGTCAGGAGGGTCTCTTAACGGGTACTCTACCTCTGCTGAGTCCTCAAGAGGATCCAGACGCTGTTCGACCGGTCTCGTCACCGTTATCGGCAGCGTTCTACACGACAACTATGTCCTCAGCCGCTGCAGTCGAGGAAGCTCTGAGCGAAGTTCTCCCCGGTGAATCCGAAACAGACGCCGATCTCTACGGTCCAGGCTCGCCGAATCCAAACTCACCGTTGCCGAGTCCACTGTCGGCAACACCGGCGCCATCGCCTCTGTCGTCTCTGCCTCCTTCCTCAGTGTCTTCACCGGGACCCGGAACTTTCTCTTCCGGATTCCCGGTATCGCCTCATCACGCGCTACAAAATCAGATGATGCCAAACTCCGAGGATCCACTTCTCTCCTCGAGTCCAAAAGACTTCACCGTCGGTAGACGAAAGTTCGAATTTCAATCGTACAAATTGATAACGAGTCAAAATCTCGTCGATTTCGGCCTCGGCAATGGAAGCGTCACCGGTATCGTTCTCGACAACAATGGCGAGTACAAGCTCATACAAACAGCCGGATTGCAGAAAGCCAACGTTTTGGTACCCGCCGGATCCCTGAGTCCCGCTTTGACGTTCAGAAAAGAGATACGTCTTGCCAGTCCGAAAATCGAGCCTGGTGTCGTAAACATATCAAATCAAGGATTGAACGTACAGACTCAACACTTCCAACAGAATCCGATACACCAGCACGCGATTAATCCGGCAAAATTTCTCATACACACGAGTCaagcgacgaaaaattcgttgaagCACAAAATAGCTGTGAACAGTTTGCCGATACCGATAGAGCAGATTAAAGAGGAATTGTTGGACGATGATATTTTTCTGAGTCCTGGCAGCATACCGACGAGTAGTCCTGTTAGACAGTCGAGGAAGAGACCGAGAATCGAGGGACACTATACGAACTTGTCGCATTCCTATCCGTCGCGATTGAGACGAGCCTGCGATCGACACTGGGATAGCAGCTACACACCACCGCCGATCTTGGATCCCTCGAGATCGGGATCCGGTCTCTACGCCAGATTGCATCAACACGAGAGAGATTCGGAATTCAGTTCGGACGACTCGCAAGGAAACGATGGGCCGCCGCCGAGAATTAATATCGGGACAAGATACCAAGCTACGATACCACCAGTTGGATGTGACGGTGACAGAGGCCGAGGGGGAAGAGAAACCGATCATCCACTTTGGGATCCTGGCATAACTTGTCAGCTCACTGATACTGAACtcgAGATGTATGTGCAGTTTGCCTGTTGCGCAGCCACACCCGGCGGCGGAAGAAACAAAGAATATGCCCTTCACCTTTTGCACATGTGCAAGGGAAATATTCATGAGGCGATGCTGAAGCTAATGAGACCCACCCCGACACTGTCATTGCAGCATCCGTTGCTGAGCTACGAGTGCCACGAGTCCGATCGTTGGACGTCTCACGAGATGAGCGTTTTCTATCAGGGTCTACTCGAGTATAACAAGGACTTTGCCGCAATAGCTCGTGACGTCGgtacaaaaacaacaaagcaGTGCATACAATTTTACTACCTGTGGAAGAGGCTCTGTCCGGACGAGTACAAGAGGCTACGCGCGAGACACGGAAAACCAAAGATCAAGAGCGAAAGCAAAGATTACAATAGAGACACTAAGGATACAAAGGAACTACGAGATGCCATTGCGTCGGTCACCGAAATGGACTTcagtgaagaaaaatcgatactTCATCGGACACTGTTGcagacgaacgagagagagaattcGGCAACGCTGACAACGAGCGAAGGGGAATTGAGGCTTTTCGCCTATGACTGCCCGGATAGCTTTAGCGGAAGCGTAACAGTAACGATGACCGGATGCACCCAAACCGCCAAAGCCGTCAATATCGGCAACTCCACAGTCAACAACAACTCACAAACTCACATTAGCTCTGAGCAACAACTACCCGTGCCCACCCCGCTTCACTACCCCTGCAAGATTTGCGGGAAagtTTTCAACAAAGTGAAAAGCAGAAGTGCCCACATGAAATCACATCGGCCAATACCATCGCCAGATACAACGAGTCAGGAATCTAAAAGACCTGtccagcaccagcagcagccaATATTGCATCAACTAAAGCAACCGCAGCATCATCAGCAGATCAACGGATCAACGCAACCGACCgattatctgaaaaaattgtcatcgaGCATCAACGACCCGAGCAATCCAAATGCCAATCACTTGTGGCACAATCCAACGAGATTGCGACCACCATAG
Protein Sequence
MTNNIERQEECERPRIHDSSKSLIETSVVDELEPSGVSALVKLYVIKQQQQQQAQQQQQVQQAQQQQQQQPQQQQQQQQQQQQQQQQQQQQPQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQPSQPPQPPQPPQPPQPPQPPQPPQQPQQPQQPQQPQQPQQQQQQQQPQQQQQQQQQQQQQPSQPPQPPQQPQQPQQQQQQQQQQQQQQQQQQQQQQQQQQHQTAQTQQAHQTNSPGSGNAGKGSPSPANSTSPAGIVTAVPNKPQAEPKPVECNLCSRTFKNIPALNGHMRLHGGYFKKDENKKTEKKETPGPPLQTASVNVRALIEEKIIQKRTTATEANNSNQARANAVFTNQSDGSTHVIGKTSFVVPAPPPLATGEKIRRLSDTEHFRQPNVTVNGHAAVQKQLQEAQTQAQAQALADMILKGTTKMAVKRATSDPGQRVQLTYQSSVTSTTATQQQQPSQPQAPTQPAVTESFTMTGYSEDGGYFSPSLQDEVFQQVTAVPDSVLLHATQLDSIQFQTSSLLQEQTSDQLQDITLEDRFTSQHTVNPDLRALVNSPLPDSLAEFSTYGAQYTESPHTLPAQSPLPSPLTRHDSPSFTYPTPPASQEGLLTGTLPLLSPQEDPDAVRPVSSPLSAAFYTTTMSSAAAVEEALSEVLPGESETDADLYGPGSPNPNSPLPSPLSATPAPSPLSSLPPSSVSSPGPGTFSSGFPVSPHHALQNQMMPNSEDPLLSSSPKDFTVGRRKFEFQSYKLITSQNLVDFGLGNGSVTGIVLDNNGEYKLIQTAGLQKANVLVPAGSLSPALTFRKEIRLASPKIEPGVVNISNQGLNVQTQHFQQNPIHQHAINPAKFLIHTSQATKNSLKHKIAVNSLPIPIEQIKEELLDDDIFLSPGSIPTSSPVRQSRKRPRIEGHYTNLSHSYPSRLRRACDRHWDSSYTPPPILDPSRSGSGLYARLHQHERDSEFSSDDSQGNDGPPPRINIGTRYQATIPPVGCDGDRGRGGRETDHPLWDPGITCQLTDTELEMYVQFACCAATPGGGRNKEYALHLLHMCKGNIHEAMLKLMRPTPTLSLQHPLLSYECHESDRWTSHEMSVFYQGLLEYNKDFAAIARDVGTKTTKQCIQFYYLWKRLCPDEYKRLRARHGKPKIKSESKDYNRDTKDTKELRDAIASVTEMDFSEEKSILHRTLLQTNERENSATLTTSEGELRLFAYDCPDSFSGSVTVTMTGCTQTAKAVNIGNSTVNNNSQTHISSEQQLPVPTPLHYPCKICGKVFNKVKSRSAHMKSHRPIPSPDTTSQESKRPVQHQQQPILHQLKQPQHHQQINGSTQPTDYLKKLSSSINDPSNPNANHLWHNPTRLRPP

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00841014;
90% Identity
iTF_00414691;
80% Identity
iTF_00059804;