Apro015442.1
Basic Information
- Insect
- Amblyjoppa proteus
- Gene Symbol
- -
- Assembly
- GCA_963922035.1
- Location
- OY998233.1:9835209-9837524[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.021 2 9.5 1.7 1 23 363 386 363 386 0.96 2 10 5.6e-06 0.00054 20.7 0.5 1 23 392 414 392 414 0.99 3 10 3.6e-06 0.00035 21.3 0.9 1 23 420 442 420 442 0.98 4 10 0.074 7.1 7.7 0.7 1 23 448 470 448 470 0.98 5 10 4e-06 0.00038 21.2 0.3 1 20 476 495 476 496 0.96 6 10 0.037 3.6 8.7 2.4 1 23 505 525 505 525 0.94 7 10 1.6e-06 0.00016 22.4 0.5 3 23 533 553 532 553 0.98 8 10 0.00016 0.016 16.1 1.4 1 23 559 581 559 581 0.98 9 10 0.0031 0.3 12.1 2.6 1 21 587 607 587 610 0.96 10 10 0.047 4.5 8.4 1.1 1 21 616 636 616 637 0.94
Sequence Information
- Coding Sequence
- ATGACTAACGATCAGCAAACGACCCTGGGCCAGGTCTCGGGCTCGGAGCCACACCAGCtcccgcagcagcagcatgagAACGTCGAGCTGACGGAGCTTCTTCCGGTCGAGCAGTCGCGGATAAAGGACAATCCCGGCGACAGGGATCATGAGACGACCGACGGTCTGAAAGCCCTGCGTAGTTTCTCGCGCGGCGAGCACGACGACTACGATTGCTTCGTCAAGCTCGACGCCGCCTACTCGGAGGAAATCGATGGTGAGAATAGCGAGGTTGATGGGGTCGGCGGCTCGAGGAAGCGGAAGAGCAGCCTCGAGTCGAGGATCAACGCCTTCAGGATCACGAGGAGGATAGCCGTGGAGCAGGGGACAACGAAAAATGCGCGAAAGAACCGGCGGAGAGCGAGGAGCGGTGCGGAGAACAATTTTTCCTGCGACGAGGGTGAAAAACACCGGGACGAGGCCGGGTCGAGAAGAAGTCCGCGGGTCAGCGACCGCTTCGATCCAATCAGGGACGAGGTCGAGGACGAGGTCTACTACTTCCGTCAGCAGCAGCTCGAGCCCTGCGAGATGTCGACCAACGACGGTGAGGAGGAAACGAACCTGGAGATCCTCTCGGCCGGTGTCTATCGGGACATGGCCAACAATTTCTCCGAAATCTCTCGAGCCAAAGATTCGCCGGAGTCGCCCGAAGGCTCGAGCAGGAAGAGCGGCAAGAAATCGGAGAAGCATCGGAAGAAAAAGCCCGGCAAAAGAGAAGTAAAAAGGAGTCGAAGATCACCGAGAGAAGAGACCGGGGAGGAAGATTCTGAGCTGGTAAGCAACGATTCGCCGAGGGCCTCTCTGGCGAACAAGGACGAAGCCGAGAAAGATTTGAGGCTCAAGATTGACGGGATAATACAAGCGAATTACCTGCTCGAACGCGAAAACAACAACGTCGTACAGAGAAATCACAACGAGATCAGAAGCAGCCCATCGGCTCATGATTCGTCCAAAGAGCCGAACGACACTACGGAGAACAACGTTTCTGAGACGCACAACAGCGAGGACGACTCCTCGAAGCAGGAGGACTCCCAGTCGGCGAAGAAGTACTGCTGCGTGATGTGCACCTCGAGATTCAAGGGAAGCGGCGGCCTGAGGAACCACTACAAGGTCGTCCACGCGGCTGGTCCGTTGTACAAGTGCGACGAGTGCGGAAAAGAGTTTCCACTGAAGGAACGTCTGAAGCTCCACGTGCGGACCCACACTGGTTTCAAGCCGTACAAGTGCCCCGATTGCCACAAGAGCTTCGCCCGGGGTGGCCAGCTGGTCCAGCATCGCGGCACTCACAGCAAGGTAAAACCGTACCGTTGCAACTTGTGCGCTGGAACTTTCACCTGCGCGGCGAATCTCGCCCTCCACGTCAAGCGTCACAACGGCCAGAAGGATCACAAGTGTGAGATTTGCGGTCGGGGATTCGTCAGGAAGGACGCCCTGAAGAAACATCTCGAGTGTCTTCATCGGGACGTCAAGTCGTTTCTTTGCGTGATCTGCAACAAAACGTTCAAGGGACACTTGCCGCAGCACATGAGGACCCACGCTCAGGACCGTCCTCACGGTTGCGCGACCTGCGGTCAGAGATTCGCCCAGAAGTCTCAGCTGACCGTTCATCAGAGGACCCACTCGGGTCAGCGTCCCTTCAGGTGTCTGGTCTGCTGGCAGGCTTTCGCTCACTCGACCGCCCTCAAGCTCCACACCAGGCGACACACGGGCGAGAGACCCTTCAAGTGCGCCGAGTGCAACGCGGGTTTCACCCAATTGCCGCACTGGAAGAAACACATGAAGTGCATTCACGGCAGGAGCGAGCCttacaattgtaaaaattgcaaCAGCTTCTTTCGCATAAAGAACGATCTCGAGAATCATGAGAAATCATGCCGGTTCGACGAGgtcgtcgacgacgtcgcCAAGACGAACGGCGCGGCCGAGGCGGCGGGCGGGAAAAGCAACTCCTCGTCCCCGGTCGATCCTCCGAAATTTCGAGTCATGAACGTCGAGCGCATGAGACTGCTGCTGGCGGTATTGTTGAAGAGAATATCGAGAcccgagagactcgacgagctCGGCTTCGGCAAGAGACTCATCGACGAGGTGCTCCAGGATTCGCTGGTTTCGGCCGGCAAGGAACCCTCCAGAATCGGCGAGGTCACCGAACTCGAGAGCCTTCGCAAGAACCTCGAGACCTTTCTCGAGTGGACCGTGCCGAAGGAACACTGGGACATGTTTAGGAAGATGAACAAGACCCCCGAAGAGATACTCGAGACTCTAACAGCTACGTAg
- Protein Sequence
- MTNDQQTTLGQVSGSEPHQLPQQQHENVELTELLPVEQSRIKDNPGDRDHETTDGLKALRSFSRGEHDDYDCFVKLDAAYSEEIDGENSEVDGVGGSRKRKSSLESRINAFRITRRIAVEQGTTKNARKNRRRARSGAENNFSCDEGEKHRDEAGSRRSPRVSDRFDPIRDEVEDEVYYFRQQQLEPCEMSTNDGEEETNLEILSAGVYRDMANNFSEISRAKDSPESPEGSSRKSGKKSEKHRKKKPGKREVKRSRRSPREETGEEDSELVSNDSPRASLANKDEAEKDLRLKIDGIIQANYLLERENNNVVQRNHNEIRSSPSAHDSSKEPNDTTENNVSETHNSEDDSSKQEDSQSAKKYCCVMCTSRFKGSGGLRNHYKVVHAAGPLYKCDECGKEFPLKERLKLHVRTHTGFKPYKCPDCHKSFARGGQLVQHRGTHSKVKPYRCNLCAGTFTCAANLALHVKRHNGQKDHKCEICGRGFVRKDALKKHLECLHRDVKSFLCVICNKTFKGHLPQHMRTHAQDRPHGCATCGQRFAQKSQLTVHQRTHSGQRPFRCLVCWQAFAHSTALKLHTRRHTGERPFKCAECNAGFTQLPHWKKHMKCIHGRSEPYNCKNCNSFFRIKNDLENHEKSCRFDEVVDDVAKTNGAAEAAGGKSNSSSPVDPPKFRVMNVERMRLLLAVLLKRISRPERLDELGFGKRLIDEVLQDSLVSAGKEPSRIGEVTELESLRKNLETFLEWTVPKEHWDMFRKMNKTPEEILETLTAT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00905628;
- 90% Identity
- iTF_00059662;
- 80% Identity
- -