Apro022106.1
Basic Information
- Insect
- Amblyjoppa proteus
- Gene Symbol
- hang
- Assembly
- GCA_963922035.1
- Location
- OY998236.1:8782944-8790733[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 8.9 8.6e+02 1.2 5.9 2 23 230 252 229 252 0.95 2 20 0.3 29 5.8 3.1 1 23 320 342 320 342 0.97 3 20 0.004 0.38 11.7 0.6 1 23 391 413 391 413 0.98 4 20 0.0027 0.26 12.3 0.4 3 20 457 474 456 476 0.95 5 20 0.21 20 6.3 2.2 1 23 488 511 488 511 0.94 6 20 0.012 1.2 10.2 1.6 1 23 516 538 516 538 0.96 7 20 0.057 5.5 8.1 0.0 1 23 585 607 585 607 0.97 8 20 6.8e-07 6.5e-05 23.6 0.9 2 23 646 668 645 668 0.96 9 20 0.2 19 6.4 0.3 1 23 674 697 674 697 0.95 10 20 0.0059 0.57 11.2 0.5 3 23 706 727 704 727 0.94 11 20 0.0023 0.23 12.5 0.5 2 23 736 757 735 757 0.92 12 20 0.11 10 7.2 0.1 2 20 813 831 812 831 0.95 13 20 0.045 4.3 8.4 0.0 2 23 851 872 850 872 0.96 14 20 3e-05 0.0029 18.4 1.0 2 23 894 915 894 915 0.98 15 20 4e-05 0.0039 18.0 0.2 1 23 933 956 933 956 0.95 16 20 0.077 7.4 7.7 0.3 2 23 984 1006 983 1006 0.95 17 20 0.00025 0.024 15.5 0.9 2 23 1028 1050 1027 1050 0.93 18 20 0.027 2.6 9.1 2.4 1 23 1057 1081 1057 1081 0.98 19 20 0.43 41 5.3 0.2 1 23 1086 1109 1086 1109 0.91 20 20 0.0025 0.24 12.4 0.2 2 23 1142 1164 1142 1164 0.96
Sequence Information
- Coding Sequence
- ATGGACGAGTCGGCGAACGATCCTCCGAACGTCGAATACCTGTGCAGACTCTGCCTCTCCGACGACGAGCCGCGATCGTCGGTTTTCGCCGATCGAGCGTCGGCGATTTCGCTCGCAAACAAAATTCACGCGTGCCTTTCCATCGAGatttcGGCCAACGACAAGCTTTCGACGTCGATATGCGCGGGATGTCTGACGAAGGTCAACAAGTGGCACGCGTACAAGGAGTCGTGCGCGAGGTCGCAGGAGAAGCTTCGACGATGGGTCGCGGAACGCGCCGAAGGCATACCGCAGCTGCCGATAAAGTCCGAGCCGATGGACTTCGACGAGCCCCCGGGCTCGCTGGAGACGGTTCGAGTGACCTCGGACGACGAGTGGGAGAGTCTGGTCGACGAGTGCAACGGCTCGGGCGACGTGACGTTCTGCAACCGCGCCAAGCAATCGCCGCGTGTGAATCTCCTCATAAAGCGCGAGGCGCTCGAGGACGAGGAGAGCCGCAACAACACGGAGAACGAGTCGTCGTGCAGCGCCGAGCTGCTGCCCAATCCGATGGCCGTCGCGCCGAGCAAGGACGATCGCGCGATCGAGCCGGATTCGACACAGAACCTCACGAAGAGCCTCCGAACGCGCAAGCGAAAACCCCGACGAGGCGCGACGCACTATCGCGGCGTACGGAAGTTCCGGCAGCGCTGCGTCTTTTGTCAGATTCATCTTCACTCGAAGAACAGCTACAGAAAGCACATGGAGAGGTTTCACAGCGGCCCGGCGAAGCCCGGAACTTCGACGCGAAGGCCGAACAATCTTCTGCCCGAGGAGTCGAAGAAGTTCCTCGAGAAATCGTCCGATCCGGGCGAGGAGATGGTCGAGGTCGAGGACGTCGAAGACGAGCTCGTCAGCCTCGAGAAGGACGCGCCGCTGACGCCAGTCCAGCAGAACATAATAAGCCAGCTCAAGACCTTCTCCTGCTACTCGTGCAGACAAACCTTCCAGGACCGTCGCAGCACCCTGAACCACATTCGCCAGCACATGCCCGATCTtagGCCTTACACCTGCATCGCCTGCCTTACGGAGTTCGCCGACCGCTCGATCTACAAGCTCCACTGCGGCGCATCCTTCCAGTGTGCGATGAAGATCGCCCTCGTCGTTCCCGAGCACGGCACCGAGAAGTACTTCACCTGCAACATGTGCCTGCGCCCTCTGTCGGACCGCCGCGAGCTAATGAGCCACCTCTCGAGACACTCGGACAAGCAGTACGAGCAACTGCTCGGCGCTCCGCGCCCGCCAAAACTGAAGCCGATGGCGAGGCTCGCCGTTCAGACGGAAATTCCCGTTCCTTACAACGACGGCGATCCAGCTCACAACAACCTCTGCAGATACTGCGGAATGATCTACAAACACAAGCAGAACTTATCGAGACACGTCGAGCTCTGCGAGAAACTCCCCGAGGACGGCAGAATTTCGTACAGATGCGTTCACTGCGGAGCGACTTTTCTCGCCTTCAGCAAATTCCAGAAGCACCTGAAGGACGATCACAAAAAGCGCGATTACGTCTGCTCGCACTGCAGGGTCTCCTTCGGCGATCCCGGCGAGTACCTGCAGCACTATCACGAACATCGCCCTCTGGAGCTACGCACTCTGGCGATCGGCAAGGCGAAGCCGGCGCGGTGGAGCTGCGTTCTCTGCCCCGGAAGCGGATTCGCCTCCAGGGCGAGGCTCGCCGACCACCGCAAGGACCACCTCAGAACGAAGGTTTACTCGTGTCCGGTCTGCAGGAGAATCGCCGCCGGGCCGGAAGCCCTGGAGGAGCACATGGCCGAGCACGATCAGCAACTCGCCTGCGGGAATGCCGCCAATTCGACGATTCCGAATCCGATGTACGACGAGGCGAACGCCAGCAAGCTGTCCGCATGCTCCGATCCGGGCGAGGGCAGCAGCGAGTGCCCGACCTGCGGAAAAGTCTTCGCGAGCTATCACAATCTTCGGCGTCACGTCAGGAACGTTCACGGCGCGCCGGGACGCTATCGGTGCTTCTCGTGCGCGAGGAACTTCAAGAACGAGCGCGAGTGGGCCGAGCACGTGGCGAGGGAACACAGAAAGGCCGGGGCGATTATTTGCTGCCCGTTCTGCGCTGAGAAATTCGAGTCTCAGGACGAGATGACGGCGCATCGCCGCGAGGTTCACCGCAACGACGGCGAGGACACGCTCTCCTGCTACATCTGCGGCAAGGCCTTCCAGACAGTCGGTTCGCTTCGAATCCACCGGGGCCACCACTTCCGGGTGAACTCTCGTCTGAGCATCGGGAAGCTCGCGCtgatcgaggacgacgacgatccCATCCCGGTCGCCGCTCCGGCGCCTCCGCAGCCCGCCGTTCGCAGTCCCAGAGCCCGAAAGTCCTTCCCGAACAGCCCGGCGCGGCTCGCCCCGAGCACTCttcagtgccaagtctgcaaCGACCGCTTCAACGACGTCGCGAGCCTGCGCAAGCACCTCTGGGACGTGCACTGCGCCCGCAACAAGCCCGAGAAGGAGTTCCCCTCGGTGAGACTGCAGTGCGAGCTCTGCACGAACGTCCTGCCCGACGAGGAGAGCCTTCAAAGTCACATGAGCTGGCATGAGAACAATCCGATTCTGTCTAACAGCGTCGCCAAGCGGGAGAACGGCGCAACAGCCCACGCCAAGTGCGACGAGTGCGGAAAGTTCTACAGCTCGCTCGGAAATCTCGTGCAACACAAGAAGCGCCACAGAGTGACGAATCTCTCGGCGCTGAAGCTTCAGAGAAACGGCGCTACGGGTTTCACATGCGAGATCTGCGAGAAAGTCTTCGCGATGAACGCTACGCTCAAGAAACACGTGGCGAGCAGCCACGCGGGCGACGCCAGCGCCAACGCGACGCCAGCGCCGCAGCGCGCGAAACTCGAGTTCGAGACCGAGGTCAGAAAAGGCGTGACCTGCAATCTCTGCAGGAAAGTTATGCCCGACAGGCAGGAGCTTTACAGGCATCGGGCGAGGGTTCACAAAGTGACGAGGAACGGCGCGGATGCGCACGGTGGCGCCACCGCGGCGGCGAACTCCGGCGTTTCTTGCACGATCTGCCCCAAAGTCTTCTCGAGCCTGACCAACATGAGGCAGCACTTCACGAAGTCTCACGCCCATCTGGGACATCAGTACAGGTGCGACTTCGAAGGCTGCAATCTTCAGTTCAAGAGCTTCGAGGCCAGACGCAAACATCGCAAGACTCACGCGAAAATTCTTCACTCATGTCCCGTCTGCCAGAAACGCATGGTCAGCAAAGCTGCTGTCGCCGATCACGTGACTCGGGTGCACGCTCGCAACTCCGTCGGTAACAGGAAAAATGACAAATCCGCCGGGTGGAAGAGAATCAATCTTGACAATTACACCGTCAAGGGGGCGAACGGGAGACAATGCCCGCTTTGCAAAATCACTTATCCTAACTACAAGGCGCTCAAGATTCACTACCTCAAGATCCACGAGGGCGCCGCTTAG
- Protein Sequence
- MDESANDPPNVEYLCRLCLSDDEPRSSVFADRASAISLANKIHACLSIEISANDKLSTSICAGCLTKVNKWHAYKESCARSQEKLRRWVAERAEGIPQLPIKSEPMDFDEPPGSLETVRVTSDDEWESLVDECNGSGDVTFCNRAKQSPRVNLLIKREALEDEESRNNTENESSCSAELLPNPMAVAPSKDDRAIEPDSTQNLTKSLRTRKRKPRRGATHYRGVRKFRQRCVFCQIHLHSKNSYRKHMERFHSGPAKPGTSTRRPNNLLPEESKKFLEKSSDPGEEMVEVEDVEDELVSLEKDAPLTPVQQNIISQLKTFSCYSCRQTFQDRRSTLNHIRQHMPDLRPYTCIACLTEFADRSIYKLHCGASFQCAMKIALVVPEHGTEKYFTCNMCLRPLSDRRELMSHLSRHSDKQYEQLLGAPRPPKLKPMARLAVQTEIPVPYNDGDPAHNNLCRYCGMIYKHKQNLSRHVELCEKLPEDGRISYRCVHCGATFLAFSKFQKHLKDDHKKRDYVCSHCRVSFGDPGEYLQHYHEHRPLELRTLAIGKAKPARWSCVLCPGSGFASRARLADHRKDHLRTKVYSCPVCRRIAAGPEALEEHMAEHDQQLACGNAANSTIPNPMYDEANASKLSACSDPGEGSSECPTCGKVFASYHNLRRHVRNVHGAPGRYRCFSCARNFKNEREWAEHVAREHRKAGAIICCPFCAEKFESQDEMTAHRREVHRNDGEDTLSCYICGKAFQTVGSLRIHRGHHFRVNSRLSIGKLALIEDDDDPIPVAAPAPPQPAVRSPRARKSFPNSPARLAPSTLQCQVCNDRFNDVASLRKHLWDVHCARNKPEKEFPSVRLQCELCTNVLPDEESLQSHMSWHENNPILSNSVAKRENGATAHAKCDECGKFYSSLGNLVQHKKRHRVTNLSALKLQRNGATGFTCEICEKVFAMNATLKKHVASSHAGDASANATPAPQRAKLEFETEVRKGVTCNLCRKVMPDRQELYRHRARVHKVTRNGADAHGGATAAANSGVSCTICPKVFSSLTNMRQHFTKSHAHLGHQYRCDFEGCNLQFKSFEARRKHRKTHAKILHSCPVCQKRMVSKAAVADHVTRVHARNSVGNRKNDKSAGWKRINLDNYTVKGANGRQCPLCKITYPNYKALKIHYLKIHEGAA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01364849;
- 90% Identity
- iTF_00058146; iTF_01364849;
- 80% Identity
- -