Basic Information

Insect: Amblyjoppa proteus
Gene Symbol: -
Assembly: GCA_963922035.1
Location: OY998228.1:21651468-21654019[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.00038 0.037 14.9 2.2 1 23 320 342 320 342 0.95

2 12 0.00076 0.073 14.0 4.3 1 23 346 368 346 368 0.98

3 12 0.0053 0.51 11.3 5.1 1 21 373 393 373 395 0.93

4 12 1.3e-06 0.00012 22.7 0.7 1 23 444 466 444 466 0.98

5 12 0.00091 0.087 13.8 1.4 1 23 471 493 471 493 0.97

6 12 0.00011 0.011 16.6 2.2 1 23 543 565 543 565 0.98

7 12 0.00088 0.085 13.8 3.3 2 23 573 594 572 594 0.97

8 12 4.8e-06 0.00046 20.9 2.2 1 23 605 627 605 627 0.96

9 12 5.3e-05 0.0051 17.7 1.8 1 23 633 655 633 655 0.98

10 12 0.00018 0.018 15.9 0.7 1 23 661 683 661 683 0.98

11 12 5.5e-06 0.00052 20.7 2.0 1 23 689 711 689 711 0.96

12 12 3.8e-05 0.0037 18.1 0.6 1 22 717 738 717 738 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.00038	0.037	14.9	2.2	1	23	320	342	320	342	0.95
2	12	0.00076	0.073	14.0	4.3	1	23	346	368	346	368	0.98
3	12	0.0053	0.51	11.3	5.1	1	21	373	393	373	395	0.93
4	12	1.3e-06	0.00012	22.7	0.7	1	23	444	466	444	466	0.98
5	12	0.00091	0.087	13.8	1.4	1	23	471	493	471	493	0.97
6	12	0.00011	0.011	16.6	2.2	1	23	543	565	543	565	0.98
7	12	0.00088	0.085	13.8	3.3	2	23	573	594	572	594	0.97
8	12	4.8e-06	0.00046	20.9	2.2	1	23	605	627	605	627	0.96
9	12	5.3e-05	0.0051	17.7	1.8	1	23	633	655	633	655	0.98
10	12	0.00018	0.018	15.9	0.7	1	23	661	683	661	683	0.98
11	12	5.5e-06	0.00052	20.7	2.0	1	23	689	711	689	711	0.96
12	12	3.8e-05	0.0037	18.1	0.6	1	22	717	738	717	738	0.96

Sequence Information

Coding Sequence: ATGGCTATGGATAGGAGTTTTCTCGATCATCCGATAAACAAGGACAGAGTTTGCAGAGTATGCTTGGTGGTAGGTACCAATTTATCACCAATATTCTGCACAGACCAAGAAGATGGCCTTTCCCAAAAGATTCAAGTATGCGGATCCATCGAGATACATGAAAACGATGGTTTACCATCTGTAATATGCGATTCGTGTATTCGTAATGCCAGAGCCGCTCACGAATTTAGGCAGCAGTGTCAGCGTTCGGATACTCAATTGAGGCTCATTTACGACAAACCTGTCAGTTCTACCATTGACTCTTGTACGCAGACCGAACCACAGACGCGGATAAGCCTAACGAGAAAAGTACCGAGTCCACCGACGCCTTACTTTGTGAAGCAAGACTTGCAAACAGCTACTTCGCACGACTACGCGACCGCTATGGAAGCTTACACGGAGAGCCACGATACGGTCCGAGAAGAACAGCACAAACGGCACGAAGAACAAGAGGAGCATCCTATAGACTGCCAGGACGAAAAGCTATTTCTCTGTAACATCGCGGCATTCGACACATCCATAggaataattgaaaaagaaactacAAATATTCTGACCCACAATCCTCACCAAGTTCACTGTCCTCCCGAAAATACGGAAATGCCGACCTCATCGGTAAAAATCCTAACGATAAATATCGATGGTCAATTCGAGGAGCAAGAATTTATCGTAAAGGAAGGCGACATGAAGTGCATAGAAACGGAAATGGGAGAAGAATATTTGAACGAGCAATTGCTGAACGAAGGCGATGAGGAAACCGTGAAGCTCAATGAGCATCAAGAGGTACCCCAACAGAAACGAACATTATCACGAAAAGTAAAGGCCGCCTTGACGAAATCCTACAGCGAAGTCGAGATATGTGACGAAGATTACTTCGAAGCATTGGCGGACGATAATCAAAACTCCGAGGAGCCGAAATTTAAGTGCAATGTATGCTCGAAGCGTTACACGACCCTAAaaggtttgaaaaatcattcgtaTGTACACGACAAGAATCACAAGTGTCTAATCTGCCACAAGGCATTCGACAAAttggaaaatatggaaaagcACAAAAAGATTCACGCTGCCAAGCCTCATGCTTGTCAGCTCTGCCACTTGAGTTTCTCGAGGCCTCAGAGTCTCGTTCGTCACTTGAAATGCCACCCTGATAAATCGAGCGACGCGTTAACGCAAGGAACAAACGTTGAAGATCCCGGCAAGGAGATCGGTTCGACAAAGAGCGATGGTGAAAAGGACAATGAGACAGGAACCAACCAAGTCAACGATTTCGAATTCACTCCGGGTCTGTACAAGTGCGAAGTGtgtggtgaatttttttcttcggtaaaaaatttaaagcgTCACACTCTCGTACACGGCGACAAAAAGTATTCCTGCACTGTATGCAAAAAATGGTTCTTCAGGCCAGACACCCTGAAGAAACATGCGGAGAAGCACGGCCACGGATTGCTCGATAATCTCATGGAGGACAACAAGCTATTCGATTCGGATGACGACAGCTTTCCGAAATCCGGTGTTCCGTCAGCGTCGAGCGCTGAAACGGACAAGAAGGAGGACGACGTCGAGGCCAGCATCAGAGGAGAATACAAGTGTCAGCATTGCGACAAGGTAATGGCAACGAAGAAGGGACTCAGAAGACACGTGTCTATGCACAAACCAAAAGCTGAGCCGGTAACGTGtgaaatttgtaacaaaatatGCACCAGCCAGGCGCGTTTGGCGCATCATCTAAAGAAGCACAACAAATCGAAGGAAAAGGTCCAGAGAGAATATCTTTGTCATATATGCAGCAAAGTTTATCCCAGCACTTCCTCGTTGACTTATCACATGCGAACTCACACAGGGGTCAAGCCGCATGTTTGCAAAATTTGTAATAGCCGTTTTACAACGACAACGAGCTTGGCGAATCATATACGCATTCACACGGGGGACAAGCCTTTCGTTTGTCATGTTTGCAGTGCTGCATTCGCAGTGAGCTCCGCTTTCAGACGGCACCTTACGAGACACACCGGCGAGGCTAATTATCTTTGCAAAACTTGCGGCAAAGCTTTCAAAAGACTGAGCACTCTGAAGGAACATACCTACACGCACTCTGGTGAAAAGCCATACGTTTGCAAAACTTGCGGGACAGCGTACAGTCACAGTGGAAGCTTATTCGCTCATCAGAAACGTTGTAGAGTGCAGTACGGTGAAATGTACGAGGAACAGCATACCACTGCTCATCATATTCATGTCAACAACGTTCAAATCGCCGTTAGATCGCTCCCGGTTATCGGCCAGATGTACTAG
Protein Sequence: MAMDRSFLDHPINKDRVCRVCLVVGTNLSPIFCTDQEDGLSQKIQVCGSIEIHENDGLPSVICDSCIRNARAAHEFRQQCQRSDTQLRLIYDKPVSSTIDSCTQTEPQTRISLTRKVPSPPTPYFVKQDLQTATSHDYATAMEAYTESHDTVREEQHKRHEEQEEHPIDCQDEKLFLCNIAAFDTSIGIIEKETTNILTHNPHQVHCPPENTEMPTSSVKILTINIDGQFEEQEFIVKEGDMKCIETEMGEEYLNEQLLNEGDEETVKLNEHQEVPQQKRTLSRKVKAALTKSYSEVEICDEDYFEALADDNQNSEEPKFKCNVCSKRYTTLKGLKNHSYVHDKNHKCLICHKAFDKLENMEKHKKIHAAKPHACQLCHLSFSRPQSLVRHLKCHPDKSSDALTQGTNVEDPGKEIGSTKSDGEKDNETGTNQVNDFEFTPGLYKCEVCGEFFSSVKNLKRHTLVHGDKKYSCTVCKKWFFRPDTLKKHAEKHGHGLLDNLMEDNKLFDSDDDSFPKSGVPSASSAETDKKEDDVEASIRGEYKCQHCDKVMATKKGLRRHVSMHKPKAEPVTCEICNKICTSQARLAHHLKKHNKSKEKVQREYLCHICSKVYPSTSSLTYHMRTHTGVKPHVCKICNSRFTTTTSLANHIRIHTGDKPFVCHVCSAAFAVSSAFRRHLTRHTGEANYLCKTCGKAFKRLSTLKEHTYTHSGEKPYVCKTCGTAYSHSGSLFAHQKRCRVQYGEMYEEQHTTAHHIHVNNVQIAVRSLPVIGQMY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00058136;
90% Identity: iTF_00058136;
80% Identity: -