Apro020584.1
Basic Information
- Insect
- Amblyjoppa proteus
- Gene Symbol
- -
- Assembly
- GCA_963922035.1
- Location
- OY998235.1:18040009-18047312[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.035 3.4 8.8 0.3 3 21 8 27 6 28 0.85 2 14 0.51 49 5.1 0.0 2 20 34 52 33 53 0.93 3 14 0.59 56 4.9 0.2 1 12 212 223 212 232 0.89 4 14 0.083 8 7.6 0.9 1 20 369 388 369 390 0.94 5 14 0.00056 0.054 14.4 0.1 2 23 395 416 394 416 0.97 6 14 0.0012 0.12 13.3 1.9 1 23 428 450 428 450 0.98 7 14 0.034 3.3 8.8 0.3 1 23 469 490 469 490 0.94 8 14 0.0003 0.029 15.3 0.1 2 23 496 517 495 517 0.95 9 14 5.3e-05 0.0051 17.6 4.8 1 23 563 585 563 585 0.99 10 14 2.3e-06 0.00022 21.9 3.7 1 23 591 613 591 613 0.96 11 14 0.00027 0.026 15.4 4.1 1 23 619 641 619 641 0.97 12 14 1.6e-06 0.00015 22.4 0.8 1 23 647 669 647 669 0.98 13 14 0.0001 0.0098 16.7 0.2 1 23 673 695 673 695 0.99 14 14 0.00023 0.022 15.6 0.1 1 23 703 725 703 725 0.98
Sequence Information
- Coding Sequence
- ATGGGTTCGCTGAGTCTCGTTTGTCCGATGTGCTGCGGCGAGTCTTTCGACAATTCGCAGTCGCTTAAGTACCACTTGTTGAGCATGACGGACAATATTTACTGTCCGAACTGCGACGAGCGTTCCGACTCGGTCGCCGCGCTGATACAGCACTTGGATTGCTGCGGACAGCGCGAAGAGACCAAGCAGATTCTGCCGGAGCGTGAGGAGGCTCGACGGTCCTGCGAGGGTGTCGGCGTGGAGAGGAGAGGGAGGAACGCGCGAGGCGGCTTTACGGCGACGGCGAGCAAGGACGGCACTTTGATCGTTGGCGATCCGAGCGCTATGGACATTAACGAATACGGTGGCATTCGTCTGGTAGAGAGGATGGAGACCGACGAGAACAATTGCGGCGACGGGGTTAATATGGAAAATGTACAAGAAACGGAATGCCTTAAAAGTccgattttcaagaaaaaCGATCGGGACGCAAAAATCGCGGAATCGGTGAAGACCGGAGCAAAATGTGAGGAGGACGAAAACGATTCTAGTCTAATGGGAATGGAGCATCTGGATGAGCGAGAATCGATTCAAGAGTTGGATGAGGAAGGCCTGCTGGAAGTTAAGAGAGAAATATGCGagGAGGAGTCCCTCTACAGCTGCAGCAGTTGCGGCATGAGTTTCAACAGCGTCCTGGAGCACATAAAGGAGTATCACGACGGTCAGGAGGTCGTCCTTGAAATGGCCGAGCAGCAAATCGATGATTTGCCCGAGGAGGACAATTGTCCGACGGACAGTTGCTCGCGAGTGGCTGAGGAGAATTGTCCCGCTGATCGTCACACGGGGACGTCGGAGAGTCTGCCTCGTCAGCGTCAGACGATGAATACGCTGAGGACCGAGGAGTGCGTCGACAGCGAGGGACGACTTTACACGAGGAAGGTCGTGCAGATCGAGAGATTCTGGGACCGCGCCGCGGCGGTCTCGCAGTCGCAGTCGCAGCAGCAGCCCTCGAAGAGCGGGCCGATGATCgagaaatttttctcgaacgtaGAGGGTGTGAAAATGCGAACGAAGAGCCCGACGAGCGCGACGTCTTCCGCCGAGTCGAGCGCGCCTCAGAGAATGTACAGATGCAACAAGTGCCTCGAACAATTCGCGAAACTCGGAGACTTTCGCGTTCACGCGTGCCTCAACGGCAACAATCAGTGCGAACTCTGCGAGCAGGCGTTCGCGAGCGCGAAAGCCTTGCAGGTGCACTCGCGGATTCATCAGGTCGAGGTGGAAGCCGGAGCCGGAAAGAATTTTATATGCCCGACGTGCGCGACCGAATTCTCGTCGCACAAGAGCCTAAGATTACATTCGAGGATGCACGCGCCGGTCAGGGCGAGACACGTCGACGCGCCCGAGGGAACGGCCAACGGAAGTTTCACGTGCCTCGAGTGCGGCAAAACTCTGTCGGAATCGTACAGAATAGCACACATGTCGTTACACACGGGGGAATCTGTTACGTGTTCCATTTGCAATCGGAAATTCGATTCGTCGGATAGCTTAGCGATGCACGCTGCGGTACACACCGAAGCTGGACAAgcacaacagcagcaacagcagcaacatcAAATAATGTTAATACAGAAACAAGATGAGTTCGGTGGAGAAGTCAGACAATCCGGAGAGGCAGGTGCGGATACTCTCGATCCTCAAAAGCCTTATCAGTGTCAGCACTGCGGAAGGAGATTCACGAGACCTCACGAGAAGGTGAAACACGAGAGGATACACACGGGAGAGAAACCCCACGCTTGCGAGGTATGCGGCAAGACATTTCGTGTCTCCTACTGTCTGACCCTCCACATGAGGACTCACACCGGCGTGCGTCCCTACGCCTGCCAGCACTGCGGGAAGCGTTTCAAAGCCTCCTCGGTCTACAATCATCACTTGCTAACTCACGGCGACGAGCGCGCCTACACTTGTCCCTACTGTCCCAAGACCTTCAAGACCCGGGTCCAACTCGCCGGTCACAAGAACAGCCACACCAAACCGTTTCGATGCACCGAATGTTCCCGGCCGTTCGCCTCCCTCTACGCAGCCCGCGCTCACATCCAGACCCACAAGAAGGACAACAACCTGAAGTTCAGCTGCTACATATGCGGCGCATCCTACGGGCGCGCCTTCGCCCTCAAGGACCATCTAAAAATCCACGCCGAGCAGGACTCCGCCGCGACGCCGGAGGCCGCCCGCGAGGAGGAAGTCACCGAGGCCGAGGATTATCTCATTACCGAGGAGACCGACGAGTTCGAGGACATTGAGATCGAACGGGAGGAAAAGGAACTCGTCGCCGCCGCGGCCGCCGTCGGCGTCGACGAACAATCCGAATGA
- Protein Sequence
- MGSLSLVCPMCCGESFDNSQSLKYHLLSMTDNIYCPNCDERSDSVAALIQHLDCCGQREETKQILPEREEARRSCEGVGVERRGRNARGGFTATASKDGTLIVGDPSAMDINEYGGIRLVERMETDENNCGDGVNMENVQETECLKSPIFKKNDRDAKIAESVKTGAKCEEDENDSSLMGMEHLDERESIQELDEEGLLEVKREICEEESLYSCSSCGMSFNSVLEHIKEYHDGQEVVLEMAEQQIDDLPEEDNCPTDSCSRVAEENCPADRHTGTSESLPRQRQTMNTLRTEECVDSEGRLYTRKVVQIERFWDRAAAVSQSQSQQQPSKSGPMIEKFFSNVEGVKMRTKSPTSATSSAESSAPQRMYRCNKCLEQFAKLGDFRVHACLNGNNQCELCEQAFASAKALQVHSRIHQVEVEAGAGKNFICPTCATEFSSHKSLRLHSRMHAPVRARHVDAPEGTANGSFTCLECGKTLSESYRIAHMSLHTGESVTCSICNRKFDSSDSLAMHAAVHTEAGQAQQQQQQQHQIMLIQKQDEFGGEVRQSGEAGADTLDPQKPYQCQHCGRRFTRPHEKVKHERIHTGEKPHACEVCGKTFRVSYCLTLHMRTHTGVRPYACQHCGKRFKASSVYNHHLLTHGDERAYTCPYCPKTFKTRVQLAGHKNSHTKPFRCTECSRPFASLYAARAHIQTHKKDNNLKFSCYICGASYGRAFALKDHLKIHAEQDSAATPEAAREEEVTEAEDYLITEETDEFEDIEIEREEKELVAAAAAVGVDEQSE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00721447;
- 90% Identity
- iTF_00059625;
- 80% Identity
- -