Apro004622.1
Basic Information
- Insect
- Amblyjoppa proteus
- Gene Symbol
- -
- Assembly
- GCA_963922035.1
- Location
- OY998229.1:12704239-12707206[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.0049 0.47 11.4 4.9 2 23 31 52 30 52 0.97 2 19 0.03 2.9 9.0 2.2 1 23 61 84 61 84 0.97 3 19 0.018 1.8 9.7 1.7 1 23 99 122 99 122 0.95 4 19 0.31 30 5.8 2.5 1 17 128 144 128 145 0.89 5 19 0.0022 0.21 12.5 0.4 1 23 147 170 147 170 0.97 6 19 1.4e-07 1.3e-05 25.8 0.4 3 23 178 198 176 198 0.97 7 19 0.00018 0.018 15.9 0.1 1 21 204 224 204 225 0.94 8 19 1.5e-05 0.0014 19.4 0.0 1 21 232 252 232 253 0.95 9 19 7.2e-05 0.0069 17.2 4.5 1 21 342 362 342 365 0.96 10 19 0.0025 0.24 12.4 0.3 1 20 371 390 371 392 0.93 11 19 0.039 3.8 8.6 0.6 5 23 422 440 421 440 0.95 12 19 6.1e-05 0.0059 17.4 2.2 1 23 446 469 446 469 0.96 13 19 0.00043 0.041 14.8 1.2 2 23 475 497 474 497 0.93 14 19 0.0076 0.73 10.9 0.5 1 23 502 525 502 525 0.97 15 19 2.6e-06 0.00025 21.8 0.5 1 23 540 562 540 562 0.96 16 19 9.7e-06 0.00093 20.0 1.9 1 23 568 590 568 590 0.98 17 19 0.0025 0.24 12.4 2.4 1 23 596 618 596 618 0.96 18 19 1.4e-05 0.0013 19.5 0.4 1 23 624 646 624 646 0.97 19 19 1.7e-06 0.00016 22.3 0.1 1 23 652 674 652 674 0.98
Sequence Information
- Coding Sequence
- ATGGATCGGTATATTAAGCAAGCCTGCAAAGCGTATATTCATTTTGACTCGTCCTcgtgtattaaattttatctatTAGTTTTGAGCCTGAAGTGCAACAGTTGCGGTTTCGAGTGCACGAACCGGAGCACCCTCTACTCGCACAAGCGGCGTCATCGAGCGACGGAGGCCAGCGAGGTTTACTCGTGCAACGAATGTGATTTCAAGACCGGAAAGACAACATCGCTCTACTCGCACATAAAGCGCAAGCACAAACTTCCCAGAGCCTCGAACGACACCGAACAGCCCGAGTTATTCTCGTGCAGCCAGTGCGACTACaagaacaaaaacaaatacgAGCTAAAGGTCCACGTGGCACGAAAGCACACCGACGACTTCAAATTCTCGTGCGAGACTTGCAGCAAGAAATTCAAGAAATTCGCTCACTACAAGGCCAAGTACGAGTGCCAGGTGTGCAAACGGCGAATGGTCAGCCAGGAGAACCTCGATGAGCACATGCTGAGGCAGCACGAGAAACGCGAGAATGTCATCTGCGAGGAGTGCGGAAAGAATTTCTCGCGCAACAGCAGACTCAAGATCCACATGCGTATCCACAATGGGGACAAACCGTACGACTGCACGGTTTGCAACAAATCGTTCGCAAGGGGAACGGCACTTAAGCAACACCTTCTCATTGACACAGGCATGCGACTTTACGTGTGCGACATATGCGACAAGGCTTTCACCCAGAAACCCGGACTGATAAGTCATCGAAAGATTCTCTGCCGCGATAGTCAACTCGCCGTTGGAAAGCTTGTGGTCCGGCGTTCGCAGAGGCTGAAGAGTAAGGTGTCGGAGGACTCTACGATCTGCACGACGATAAAGGAAGAAATTACAAAGGACGAGAACGTCGACGTCCCGAGTGGTAATCCGTTCCTCGAGGTGCGAATCAAGAGAGAGGACGATATAGTCTCGATAGCCGGCGAGGGCGAGGAGCTCGTCCATCTGAATAACGAAGATGACGAGGAGGAGGTCTACGGCGATTATTCTTGCCAGAAGTGCAACATATGCTTCACCACTTGGGACATGCTCAAGATTCACATGAAATGCGTACACGAAGCTAGACAGTGCTTCAAGTGCAAGATATGCTCAAAGGTGTACAACAACGTGGAGGCTTTCCAGTTGCACGTGACGTCCGATTACGGAAGAGACAACGACGCCGTGAACAAATGTCTCGGGACCCTGACATCCTCCGTAGCGGACAACCCGGAGATGTCGTACAGTCTGTGCGACTACAAGACCAAGAACAAGACCTCACTGGCGAAACACGTCTCCAAACACGTTGAGAAGTCGAGATTCTCGTGCGACAAATGCGGAAGAAAATTCAAGATTCGTCGAAATTTGATTTACCACATAAGATTCAGTCATCGCGAGCAGTCGTGCATATGCGACGTTTGCGGCGAGACGTTCGCCAACAACAGATCCCTCGACACTCACAGAAAATTCGTTCACTTCGAGGGCAAGTTCCAGTGCAAGCTGTGCAATCGGTTGCTGATAAGTCAGGAGAACCTCGACACGCACGTGCTCCGCCAGCACGTGCAGAGGAAGCCGGCGAAGGCGAAACCGCTACAGAAGAAGTTCGTGTGCGAGACGTGCGGCAAAGTCTTTACCAGAGTCGACAAGCTCAAGAGGCACAACCTTGTGCACGCCGGCGAGAAACCGTTCGTGTGCGAGACGTGCGGCAAAGCCTTCAAAAAAGTCGACAAGCTCAAGAGGCATCACCTCGTGCACACCGGCGAGAAACCGTTCGTGTGCAAGACGTGCGGCAAAGCCTTCACCTGTGTCGACAAGCTCAAGAGGCACAACCTCGTGCACACCGGCGAGAAACCGTTCGTGTGCGCTATATGTAAGGAGACTTTCGCGAGGAAGAATTCTCTGACTCAGCACTTGCTTCTTCACACCGGTGCTAAACCGTACGTCTGCGACATATGCGGCAAAGCTTTCGCTCAGAAACCCGGACTCACCGGGCACAGAAGATCGCATCCCGGTCATCATCCACCTCTACCGCCCGTATTCGTCGGTCCCATTATCGAGGACATTCTCAAACAATGCGAACAATAG
- Protein Sequence
- MDRYIKQACKAYIHFDSSSCIKFYLLVLSLKCNSCGFECTNRSTLYSHKRRHRATEASEVYSCNECDFKTGKTTSLYSHIKRKHKLPRASNDTEQPELFSCSQCDYKNKNKYELKVHVARKHTDDFKFSCETCSKKFKKFAHYKAKYECQVCKRRMVSQENLDEHMLRQHEKRENVICEECGKNFSRNSRLKIHMRIHNGDKPYDCTVCNKSFARGTALKQHLLIDTGMRLYVCDICDKAFTQKPGLISHRKILCRDSQLAVGKLVVRRSQRLKSKVSEDSTICTTIKEEITKDENVDVPSGNPFLEVRIKREDDIVSIAGEGEELVHLNNEDDEEEVYGDYSCQKCNICFTTWDMLKIHMKCVHEARQCFKCKICSKVYNNVEAFQLHVTSDYGRDNDAVNKCLGTLTSSVADNPEMSYSLCDYKTKNKTSLAKHVSKHVEKSRFSCDKCGRKFKIRRNLIYHIRFSHREQSCICDVCGETFANNRSLDTHRKFVHFEGKFQCKLCNRLLISQENLDTHVLRQHVQRKPAKAKPLQKKFVCETCGKVFTRVDKLKRHNLVHAGEKPFVCETCGKAFKKVDKLKRHHLVHTGEKPFVCKTCGKAFTCVDKLKRHNLVHTGEKPFVCAICKETFARKNSLTQHLLLHTGAKPYVCDICGKAFAQKPGLTGHRRSHPGHHPPLPPVFVGPIIEDILKQCEQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00058117;
- 90% Identity
- iTF_00058117;
- 80% Identity
- -