Apro004607.1
Basic Information
- Insect
- Amblyjoppa proteus
- Gene Symbol
- -
- Assembly
- GCA_963922035.1
- Location
- OY998229.1:12672114-12676098[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 1.9e-06 0.00018 22.2 1.1 1 22 106 127 106 127 0.96 2 18 6.5e-05 0.0062 17.4 3.2 2 23 163 184 162 184 0.97 3 18 0.0051 0.49 11.4 0.1 2 23 189 210 188 210 0.97 4 18 5.1e-05 0.0049 17.7 0.5 3 23 218 238 217 238 0.98 5 18 2.4e-06 0.00023 21.8 0.3 3 23 246 266 244 266 0.97 6 18 5.2 5e+02 1.9 5.6 1 23 275 297 275 297 0.97 7 18 0.024 2.3 9.3 0.5 2 23 304 324 303 324 0.93 8 18 0.00023 0.022 15.7 2.8 3 23 332 352 331 352 0.98 9 18 0.0093 0.9 10.6 2.3 1 23 444 466 444 466 0.98 10 18 2.5e-05 0.0024 18.7 0.1 3 23 474 495 473 495 0.96 11 18 1.1e-05 0.0011 19.8 1.2 1 23 501 523 501 523 0.97 12 18 0.079 7.6 7.6 0.2 1 23 527 549 527 549 0.97 13 18 5.7e-05 0.0055 17.5 2.1 3 23 557 577 555 577 0.96 14 18 4.3e-05 0.0041 17.9 0.1 1 23 583 605 583 605 0.97 15 18 0.76 73 4.6 1.1 1 23 611 633 611 633 0.95 16 18 9e-07 8.7e-05 23.2 0.1 3 23 641 661 639 661 0.97 17 18 4.2e-07 4.1e-05 24.2 0.6 1 23 667 689 667 689 0.98 18 18 2.2e-07 2.2e-05 25.1 1.3 1 23 695 717 695 717 0.98
Sequence Information
- Coding Sequence
- ATGGAACGTTGTAAAGTCGGAAGCGATAATCGAGTgctGAAGCACGGGAATCTGCGAAATGCCAGGAAGTCGCGTCCATCCTGGGGTTCGAATCGATTGGACGGGAGGGACGAGTTCGACGATAGAGTATCGGAGGTAGTCGATTGTATAATAAACGCCGAGGTGAAGGTCTGCGAGCGGAATCTCCGAACGGAGCAGCATCGGTGCGACTCTTGCGATGAGTACCACGACTCCGAGGACGCCCTGCTGCTGCACAGGACTGAGCAGGAGATTCGTCGGGTACGGCGGAATATTCGCGAGAGGAGACTGGCAGATTTTTCTTGTCCGTATTGCGGcgaaaaattcacgaagaaCACGTCGCTTCTGAGACACCAGAGAAAACGTTGCAGGGAGTACAAGAAAGCCGTAAAATTTAATCGAGCCGTCGTGCAGGAAGCCGAGACCGATCAGGCCAGGGAGGACAAACTCCACCCGGCTGAGCCCGTCGAGTGCGACATTTGtcacaaaaaatttaagaagAAGAGATACATCAGAGTCCACATGCGTCTTCATGGATCACCAAGCGTGTGCGACATATGCGGTGCCGTCCTGGCGTCCGACTGGTGCCTGGAGCAGCACATAAGACGCCACAAAGCCGATTACTCGGTGTTCTGCGAGGTGTGCAATAagggtttttactaccgagcGACGTTGAACGTTCACATGACGACGCACACTAAGGAGAAAACTATAGCCTGCGAGGTCTGCAAGAGAGCGTTCGCCAACCGGGTATATCTTCGGAGTCACATGAGGACTCATCTCGACCCGGAGACGAGAAAGAAATTCAAGTGCGAACTGTGCAGCTTCGAGACCTTCTACAGCTACTGTTACAAGGAGCACAGGGACACTCACACCGGCGAGGGAAGGATCGAATGTCAGATATGCGGAAAATTCATACGACGGCAGTACATGAAGATCCACGTAAGGATGCACACCGGTGAGAAACCCGAGATATGCGAGTTCTGCGGAAAACGATTCCTGTCGAGAAAATATCTGACCAAGCATCGCCGCACCCACACCGGCGAGAGACCTTACAGGTGTGCACCGGTGGACGAAGAGTCGACGAAATTGGAGCCGATCGAGCTCGCCGGAGAGTACGTTATAGGCGCCGAGGACAATGACGACGACGAATACACGGAGGAGTATCGAAGCTTCGAGGGCCACGAGGTTGTCACGGAGACACTGGAATACACGGTGGACGTCGAAGATATCAAGGCCAAAACGCGGATGGAAGAAACGCGGAAGCGAACTCGCTGCAGGTCGGAGAAACCGAGAAAATCGCAGAAGCAGTACGTCTGTGACACGTGCGGTAAGACAATGAGAAAGAAGCTTCAATATCTGAAGCATCGTCAGAACCACGAGAGGAAGCCGGGTGGCCCGTGCGAGGAgtgcgacaaattttttatcgacgagGAGAAACTCCGAAAGCACATAATCAAGGCTCATCAGGAGGACAAGCCGTTTCCTTGTCTCCTATGCGGAAAGTCCTTCAAGACCGAAGAATTCCTCAAGACCCATCTTAAGCagcacaacaaaaaattcgtctGCGACATATGTGGTGTGTCGAAAGTGTCCGGCTACGATCTGAGGCTCCACAAGAAGAAACACAATCAAGAGTACGTTACCCACTGCGAGATTTGCAGCAAGGGATTTTACACGAATCAAACTCTGGAGCGTCATCTGCTGACTCACACCGGCGAGAAACCATTCGCCTGCACGATATGCAACACACCGTACGCGAGCGCCGCCTATCTCAACATGCACATGAAGTCGCACGGCCAGCGCGAGAAGCACAAATGCAACTTGTGCAGCTTCGAGAGTTACTGGAAGGCCGCTCTCAAGGTTCACCTTAAGATACACAGCGGTGAGAATCAGATAGCTTGCGAGATATGCGGCAAATCGGTCTCGAGCAAGACCTATCTGCAGATACACATGAGGATACACTCTGGCGAGAAGCCCCACGTCTGCGAGATTTGCGGCAAGGCATTCAGCGtaagaaaatatttgatcGTTCATCTGAGGACTCATACCGGCGAGCGACCCTACGAGTGCAAGATATGCCAGAAGACATTTACGCAGCAGGGATCTCTGAATTCTCACGTCAAGTCGCACAATGagacgaaatga
- Protein Sequence
- MERCKVGSDNRVLKHGNLRNARKSRPSWGSNRLDGRDEFDDRVSEVVDCIINAEVKVCERNLRTEQHRCDSCDEYHDSEDALLLHRTEQEIRRVRRNIRERRLADFSCPYCGEKFTKNTSLLRHQRKRCREYKKAVKFNRAVVQEAETDQAREDKLHPAEPVECDICHKKFKKKRYIRVHMRLHGSPSVCDICGAVLASDWCLEQHIRRHKADYSVFCEVCNKGFYYRATLNVHMTTHTKEKTIACEVCKRAFANRVYLRSHMRTHLDPETRKKFKCELCSFETFYSYCYKEHRDTHTGEGRIECQICGKFIRRQYMKIHVRMHTGEKPEICEFCGKRFLSRKYLTKHRRTHTGERPYRCAPVDEESTKLEPIELAGEYVIGAEDNDDDEYTEEYRSFEGHEVVTETLEYTVDVEDIKAKTRMEETRKRTRCRSEKPRKSQKQYVCDTCGKTMRKKLQYLKHRQNHERKPGGPCEECDKFFIDEEKLRKHIIKAHQEDKPFPCLLCGKSFKTEEFLKTHLKQHNKKFVCDICGVSKVSGYDLRLHKKKHNQEYVTHCEICSKGFYTNQTLERHLLTHTGEKPFACTICNTPYASAAYLNMHMKSHGQREKHKCNLCSFESYWKAALKVHLKIHSGENQIACEICGKSVSSKTYLQIHMRIHSGEKPHVCEICGKAFSVRKYLIVHLRTHTGERPYECKICQKTFTQQGSLNSHVKSHNETK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00905570;
- 90% Identity
- iTF_00905570;
- 80% Identity
- -