Apro006263.1
Basic Information
- Insect
- Amblyjoppa proteus
- Gene Symbol
- -
- Assembly
- GCA_963922035.1
- Location
- OY998229.1:40203063-40204667[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 5.5e-11 5.2e-08 32.9 0.0 2 36 16 51 15 55 0.91
Sequence Information
- Coding Sequence
- ATGCCAAAGCTTGTGGAAGGAACAAAGTATACAAAGAGATACAGCGAGGACAATGTTCGAAAGGCGCTGGAGGCCGTTGAAGGAGATGGAATGTCGGTGCGCAAAGCCGGACAATTGTTCGGTGTACCGAGAGCTACCATTCAGTTTCGTCGGAGCAATCAGTTCAAGAACAAAACGACGCTAGGGCCCAGTCCGATATTGACCGGCGAAGAGGAGGATACTCTGGAAAAATGGATATTGGCAAAGCACAGGAAAGTTTGTCCGAGACGCAAGGAAGGGATTCAGGCGTCGGTCAAGGACATATTGGACGCCAAACCCAGGGCGAATCCGTTCAAGGATAATTATCCCGGAGACGGTTGGTACAAAGCTTTCCTGAAGCGTCATCCAAATTTGAAAGTCACGGCCGCCAGTATAAAAGGTTCGGGAAAAGATATCCGCAAATGGTTCTCCAATATCGAGGAATATCTTAACGAAGCCGGAGTCGGAAATATTCTTCAAGATCCTACGAGGATCTACAACGCGGACGAGACGAATTTCGAGCTGTGtccaaaaaataacaaagttcTGGCGCCGCGAGAAGTGAGAAACGTTGACGAAGTAGAGGGCGCTCTGCCCAAGTCCAATATATCAGTTATGTTCACGTTCTCCGCAGCCGGCGACGAAACTCCGCCGATGGTCGTTTATCCCTACAAACGTCTGCCTACCGATATCGTTAAATCGGTGCCGCAAGATTGGGGCATCGGTTGCACCGACAATGGGTGGATGAAGTCCGAAGTTTTTTACGATTACATACGCAACGTACTGTATCCTTATTTGCAGAAAAAAGGTATTATATTTCCAGTTGTATTGTATCTCGACGGTCACAGTTCTCACGTAACTTATCGAGTGAGCCAATTGTGCACCGAGTTGAACATACTCCTGATAGCCCTTTATCCGAACGCTTCGCGTTTTTTGAAACCCGCCGAGGTTGCAGCGCTGAAACCTCTGAAGAACAGCTGGAAGAAAGGGGTAATGgagtttcaaagaaaaaatccGCTAGAGGTAATaactaaagaaaaatttgCTCCCCTGCTAGCGTCTCTCCTGGGCAGCGGTGTTTCTTCGGATTCTATAAAAAACGGCTTCCGCGCGTGGGGAATATATCCGTGGAATCCAACGACGATCGACTACACAAAGTGCatagagaagaagaagattcaACATCCGGAAAAGACCGAGAATCGCAACGCCAATTTGTATCTATCTTGGGAGGATTACGAAAAAATCGTTGGACCGCGTAGAATCGACACGTTCAGAGGCATAGAGGATGGCATAGAGCGCGATTCCGAGTGGAGATTCGAGAATACGTTCACCGAAATGGGCGAGCTGACGCTCTTTCATCTCTATCGTCAGTTCAGAGTGAAAAGGCCGAATGCGAACGGTACGAATAACGTTAGCAACCCCGAACCGGCGATGCACGAGGGTCATCATTTCGTCGCGGACGCGCATGCGGCCGATCACTTGGAGTTTCTTTATCGTACTCATCCCGCCGATCTGGGACAAGGAGCTACCAATACTTTCGTTCCAGGCCCGAGTAATATGTATAACAACAATGCCTTCCCCTAA
- Protein Sequence
- MPKLVEGTKYTKRYSEDNVRKALEAVEGDGMSVRKAGQLFGVPRATIQFRRSNQFKNKTTLGPSPILTGEEEDTLEKWILAKHRKVCPRRKEGIQASVKDILDAKPRANPFKDNYPGDGWYKAFLKRHPNLKVTAASIKGSGKDIRKWFSNIEEYLNEAGVGNILQDPTRIYNADETNFELCPKNNKVLAPREVRNVDEVEGALPKSNISVMFTFSAAGDETPPMVVYPYKRLPTDIVKSVPQDWGIGCTDNGWMKSEVFYDYIRNVLYPYLQKKGIIFPVVLYLDGHSSHVTYRVSQLCTELNILLIALYPNASRFLKPAEVAALKPLKNSWKKGVMEFQRKNPLEVITKEKFAPLLASLLGSGVSSDSIKNGFRAWGIYPWNPTTIDYTKCIEKKKIQHPEKTENRNANLYLSWEDYEKIVGPRRIDTFRGIEDGIERDSEWRFENTFTEMGELTLFHLYRQFRVKRPNANGTNNVSNPEPAMHEGHHFVADAHAADHLEFLYRTHPADLGQGATNTFVPGPSNMYNNNAFP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00459668;
- 90% Identity
- iTF_00059373;
- 80% Identity
- iTF_00057849;