Afus008641.1
Basic Information
- Insect
- Amblyjoppa fuscipennis
- Gene Symbol
- -
- Assembly
- GCA_963575735.1
- Location
- OY754490.1:20475528-20478881[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.0058 0.53 11.2 0.3 1 23 321 343 321 343 0.96 2 11 0.00011 0.01 16.7 0.6 3 23 354 374 353 374 0.97 3 11 0.0073 0.66 10.9 0.6 6 23 464 481 462 481 0.94 4 11 9.1 8.3e+02 1.2 0.2 1 20 486 505 486 510 0.77 5 11 0.00012 0.011 16.5 1.5 1 23 557 580 557 580 0.96 6 11 7.8e-06 0.00071 20.3 1.7 1 23 620 642 620 642 0.96 7 11 0.0002 0.018 15.9 4.0 1 23 656 678 656 678 0.96 8 11 0.00018 0.017 15.9 4.7 1 23 684 706 684 706 0.98 9 11 0.0016 0.15 13.0 3.2 1 23 712 734 712 734 0.98 10 11 5.6e-05 0.0051 17.6 6.5 1 23 740 762 740 762 0.98 11 11 0.00026 0.024 15.5 0.3 1 21 768 788 768 789 0.93
Sequence Information
- Coding Sequence
- ATggaaacttcgacgaaaagcaACAGTTCGTCGGTGCACAACAATGGCCTGTGCAGAGTTTGCCTGTCGGTGAACGAGGACAACAAGTGTATTTTCACGCCGCACAAAAATCTTGACCATGAAAGTTACAGCTTCTCGAGCTTGTGGCAAAAACTCCAACTGTACGGAGGCATTGAGGTTGCCCAGAACGATGGATTTCCCTCAAAGATGTGCAGCGAGTGCATATGCAAGATGCGCATCGCTCATTGCTTCAGAGCTCAGTGTCAGGAGACGGATAGAATATTGCGAGCTGCGTACATGAATAACTTGAATGTTCCATGCTGGACGACAGAGGATGTTGCCTATGTCAAGACAAAAATGGGAAAGATCAACAAACTCCAGAAACCAGAGGAGATTGCAGGGTACGAAACGTTAACAAGCCCAGTTACAGAAATCACGGGTCCTCCGCGTTTGCCCGAAGActcggaaaaaataaaaatttctattgTCGGTAAGGTAGGTGACGACGCGTCGgtaacgacgaaaaatttgtcCCAGACTCGAAAATTGATTATCGCTAAGAAGCTGAACTTCGCAAAGGGGCAGAAACCGTGGAGGTTTTGCAACGATAAAACAGCGGAAGATAGGCTCGAGACTGGAGCGGCCACGAAAGAAGTATCTACCAGAGCGAAGGAGGATGCGCCACTCTCGAAGAAAGAAGCGTCGCGATCTCGACGGTTAGTCGTTTTCAAGAGGGTGACATCGATGCAGAGTTTGAAGAATTACAAGGAGCGCCAGAGgcagtacataaaaaaaacggtacACGGAAAAATCGACGGCAGCGATGCGGAGACTGTACAGACTGGGAAAAATAATAGCGGCAGAGCGCGACGAGTATCGAACACCGGTagcgtatataaatataaatactcGAGCAAAAGATCCTTGGAAACGTACGAGCTCAGCAGCGACTGCGACGAATTCTCTTGTGACCGATGCGACGAGAGTTTCGGCCAATTGAACGATTTCCTGGAACACGCGAAGCTACACGATCCGAAGGAAAAGCTCAAACCGGCGATTTGCAAAATATGTAACAAGAATTTTCGCAAAGCCGTCACGATGATAAGGCACCTCAACGTTCACAAGAGGGACAATCCCAGGGCGGTGTACACGATCCTCAAGGACATCAGAGACAGAAGAAAACTGAAAAGCTTCGAGAGTCCGATTAAGGCTGGAAAAGACGTTGAaattttggataaaaaaaattctccggaACTCGGTAAATGCAAGGGGAACAATCTGACCAATCTGAACAATCAGCGCGACTTCGAGGCTGATAAATTGGACGTCGATTCAAAGAGCGACGACGATTCGCCTTCGAATAGCACCCGAGCTTTCAATAGCGAGCGATGCGGTAAACGCTGCTCTAGCGAAGAGTCTTTGCAAAGGCACGCTTCGAGCCACGAAGAACGGATTTTCGTGTGCACCGTGTGCGATGCAGAAATTGTCGGGGAGGACGTCCTGAAGAGTCACACGGAAAATTGTGGACACGCGATGGAAAAAGCGAGGCAAAACCCGCGATTCGTCGTTCACCTCGAAGCGCAAAACCCACCGGACGACAGATCGGcgataaaattgataaatatctGGATAAAAGAGGAACTCGATTCCGACAACGAGGGCAAAGGTTTCCCGTGCGATAGTTGTAACAAATCTTACGTGACGAAGAAGTCGCTGTCGAAGCATCGCGCGAAGATGCACGAAAATCTTTTGGAAAAAAGAATCGCTCATCGCTGTACGATTTGCGACGGTAATGATTGTACCTGCGTCGAGAGGATCAAGGAGAACCGGGACGGCCCGGAGGAGAAATCGAAGTCGCACACGTGCGAGGAGTGCAATAAAACTTTCGAGAAGGAATCGAAACTCGAGAAACACATGGGCATACACGCTCGCGCAAAGGAACAGCGGGATACGAATTTCAAACGTTTTCTCTGTCATATCTGCAGCAAAACGTTTCGACAGAACACTGGTCTTATGTTTCACATGCGTACGCACACGGGTTACAAACCTCACGTTTGCAAATATTGCGGTCGTGGTTTTACCTCGAATTCGAATTGTATAAATCACGAGCGCACCCACACGGGCGACCGACCTTTCGTTTGTCACTTCTGTAGTGCGGCTTTCGCGAAATCCTGTACGCTGAAAGCCCACATAACAACGCACACCGGCGAGGCTAATTATCACTGCAAGACCTGCGGTAAATCATTCAGAAGATTGAAGTATCTTAAGGAGCACAGATTCACGCACACCGGCGAGAAGCCTTACGCATGCAAGATATGCGGAACCGCCTACAGCCATTCGGGTAGCTTGTtcgttcatgaaaaaaaatgcaaggcCCAGCAAGTAAATTATCAAGCTCTTTCGGTGCCGGTATCGCAAAATTACTGTGAAAATCAACCGGTGACGATAGGAGAATTCTCGGCAGCGATAGCTCCTATAACTGGAACTCTGCCGGCTTCCCATGATGTTATCTCGATTAATAACTCGTTGAGTACAcatgagaataaaaattatgtcgACGGTGTTACGAGGATAAGCGCTCATTGTACGAGCGAGAGTACGGGCGCGCTGGTCCATCCGAGCACGGTCAATACCAACGTACCCTCGGCCGGACGAAGCTTCACCATCATCGGCCAAATGTTTCATACGTAA
- Protein Sequence
- METSTKSNSSSVHNNGLCRVCLSVNEDNKCIFTPHKNLDHESYSFSSLWQKLQLYGGIEVAQNDGFPSKMCSECICKMRIAHCFRAQCQETDRILRAAYMNNLNVPCWTTEDVAYVKTKMGKINKLQKPEEIAGYETLTSPVTEITGPPRLPEDSEKIKISIVGKVGDDASVTTKNLSQTRKLIIAKKLNFAKGQKPWRFCNDKTAEDRLETGAATKEVSTRAKEDAPLSKKEASRSRRLVVFKRVTSMQSLKNYKERQRQYIKKTVHGKIDGSDAETVQTGKNNSGRARRVSNTGSVYKYKYSSKRSLETYELSSDCDEFSCDRCDESFGQLNDFLEHAKLHDPKEKLKPAICKICNKNFRKAVTMIRHLNVHKRDNPRAVYTILKDIRDRRKLKSFESPIKAGKDVEILDKKNSPELGKCKGNNLTNLNNQRDFEADKLDVDSKSDDDSPSNSTRAFNSERCGKRCSSEESLQRHASSHEERIFVCTVCDAEIVGEDVLKSHTENCGHAMEKARQNPRFVVHLEAQNPPDDRSAIKLINIWIKEELDSDNEGKGFPCDSCNKSYVTKKSLSKHRAKMHENLLEKRIAHRCTICDGNDCTCVERIKENRDGPEEKSKSHTCEECNKTFEKESKLEKHMGIHARAKEQRDTNFKRFLCHICSKTFRQNTGLMFHMRTHTGYKPHVCKYCGRGFTSNSNCINHERTHTGDRPFVCHFCSAAFAKSCTLKAHITTHTGEANYHCKTCGKSFRRLKYLKEHRFTHTGEKPYACKICGTAYSHSGSLFVHEKKCKAQQVNYQALSVPVSQNYCENQPVTIGEFSAAIAPITGTLPASHDVISINNSLSTHENKNYVDGVTRISAHCTSESTGALVHPSTVNTNVPSAGRSFTIIGQMFHT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00905634;
- 90% Identity
- iTF_00721504;
- 80% Identity
- -