Afus010869.1
Basic Information
- Insect
- Amblyjoppa fuscipennis
- Gene Symbol
- -
- Assembly
- GCA_963575735.1
- Location
- OY754491.1:18675738-18681789[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.0046 0.42 11.6 0.2 3 19 48 64 46 64 0.96 2 13 0.00016 0.015 16.1 2.5 1 23 81 104 81 104 0.96 3 13 0.0075 0.68 10.9 0.2 1 22 110 131 110 131 0.93 4 13 0.00051 0.046 14.6 4.3 1 23 139 162 139 162 0.97 5 13 0.0069 0.63 11.0 0.4 1 21 188 208 188 209 0.96 6 13 0.00098 0.089 13.7 6.8 1 23 217 240 217 240 0.93 7 13 0.0072 0.66 10.9 1.4 1 21 270 290 270 291 0.96 8 13 0.37 33 5.6 14.1 3 23 300 322 299 322 0.90 9 13 0.00052 0.047 14.5 0.9 1 21 352 372 352 373 0.95 10 13 0.0073 0.66 10.9 0.1 1 21 410 430 410 431 0.95 11 13 0.0012 0.11 13.4 4.2 1 23 439 462 439 462 0.98 12 13 3.7e-07 3.3e-05 24.4 2.2 1 21 492 512 492 513 0.96 13 13 2.3e-05 0.0021 18.8 1.7 1 23 521 544 521 544 0.89
Sequence Information
- Coding Sequence
- ATGAAAGTCGTTGGAAGAAGTTCGCTGGAATTCGTAGAGAAACCTTACACCTtAGATTCGGTCGATCTCTTCGAATTCATGATGATGGAGATGGATCCGGATGGCGTGGTTACCGAAGAGTTCGAGAATAAACCGACCATTTGTTCGAGCTGCGGCGAGGCGTTTAACGATCAGAATTCTCTGTCGAGACATTGCGATTTGGGATGCCCGTCTTCCTCGAAAGTCACCGGATCGCGCAAGTTCGCGTGCGACGTTTGCGGTTCGCGCTTCATAAGAAAGCATCATCTCGTCAGCCATCGTAATTCGGTTCACAGCAACAAGAAGCCACACATATGCACGACATGCGGTAAGGCCTACGCCTGGAAGCCTTCCTTGTCGAGACATCAAAAGATGGAGTGCGGCAGATCACCGAAATTCACTTGCGAAATCTGCAATGCCCGATTCATACACAAGCACCACTTGATCGGCCACCGTAATTCGGTTCATCAGGCCGtttCCGAACTCGGGATCAGGATCACCGAAGCGGCCGCCGGTGCTGCTCAAGGTAACGCAAGAAAACCGCACACCTGTCCCACCTGCGGTAACGGTTATGCTTGGAAGGAGAATCTGTGGAGGCATCAACGACACGAGTGCGGCCAAACTCCGCAATACCTCTGCAACATCTGCGGTGGTCACTTCAAACACAAACACCATCTACTCAGGCATATTTCCAACGTTCATACCAACGCGCCGATAATGGctGGTCTGCTCGGATTGAAGATCATCGAAGTTGTTGGCCAAGCTCCTCGGGGTTACGGAAGAAACCTGTACACCTGTTCCACTTGCGGCAATAAGTACACTTGGCGGCAGAGCCTGAAGAGGCATCAGCGTAACGAGTGTGGCCAAATATCACAACACTGTTGCATCTTCTGCGGTTTTCACTTCAAGCACAAACATCATCTTCGCAGACATGTTAACACTGTTCATCCATCCAATGGGCCAATGATTGgcTGGGACCCGAGATGGACTATCGCTAATGTAGTCACCTGCAAAAAACCGATCACGGAGAAACCACACGTCTGTCCCACGTGCGGCAAATGCTACGCTTGGAAAGAATCTCTATTGAGGCATCGACGTGTCGAGTGCGGCCAGACTCCGAAGTTTCCTTGCGAGACGTGCGATCGGGACGGTGGGTGGAAGATCATGAACGTCGTTGGCGGTATGTATCCAGCACCGAAGCAAAAACCGTACGAGTGTTCTGCTTGCGGAAAATCGTACTCTTGGAAAATATCACTCTCGCGACATGTTCGGGACGAGTGCGGGAAACCTCCGAAGTACACGTGCATGTTTTGCTTGAAGAAATTCCAATCGAGAAGCAGCTTTCAAAGACACCTGAGCACTCAGCACAACGCGAAGATGCCGAGACCTCCACGCATACCGAAGAGACCACCTGGAAAAAATCACAACTCAAGACAGAAGCAATTCTGGAGGCCGTTCCCCTGTCACACCTGTGGAAAATCTTATACGAGGAAGGACACGCTCAGACGTCATCTGCGATACGAGTGCGGCAAGACTCCTCAGTACATATGCTACGTTTGCAAGAAAGGCTTCAAACAAAAGTCCAACTTTCAACGACACAACGCCAACGTTCATGGCTTTCGTTTCTAG
- Protein Sequence
- MKVVGRSSLEFVEKPYTLDSVDLFEFMMMEMDPDGVVTEEFENKPTICSSCGEAFNDQNSLSRHCDLGCPSSSKVTGSRKFACDVCGSRFIRKHHLVSHRNSVHSNKKPHICTTCGKAYAWKPSLSRHQKMECGRSPKFTCEICNARFIHKHHLIGHRNSVHQAVSELGIRITEAAAGAAQGNARKPHTCPTCGNGYAWKENLWRHQRHECGQTPQYLCNICGGHFKHKHHLLRHISNVHTNAPIMAGLLGLKIIEVVGQAPRGYGRNLYTCSTCGNKYTWRQSLKRHQRNECGQISQHCCIFCGFHFKHKHHLRRHVNTVHPSNGPMIGWDPRWTIANVVTCKKPITEKPHVCPTCGKCYAWKESLLRHRRVECGQTPKFPCETCDRDGGWKIMNVVGGMYPAPKQKPYECSACGKSYSWKISLSRHVRDECGKPPKYTCMFCLKKFQSRSSFQRHLSTQHNAKMPRPPRIPKRPPGKNHNSRQKQFWRPFPCHTCGKSYTRKDTLRRHLRYECGKTPQYICYVCKKGFKQKSNFQRHNANVHGFRF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00059690;
- 90% Identity
- iTF_00059690;
- 80% Identity
- -