Afus015096.1
Basic Information
- Insect
- Amblyjoppa fuscipennis
- Gene Symbol
- -
- Assembly
- GCA_963575735.1
- Location
- OY754493.1:17183766-17188353[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.00045 0.041 14.7 0.1 2 23 294 315 293 315 0.96 2 11 0.00012 0.011 16.6 0.7 1 23 321 344 321 344 0.97 3 11 1.2e-05 0.0011 19.7 3.2 1 23 384 406 384 406 0.98 4 11 6.5e-07 5.9e-05 23.7 1.5 2 23 447 468 446 468 0.97 5 11 0.00021 0.019 15.8 2.8 1 23 473 496 473 496 0.96 6 11 1.2e-06 0.00011 22.8 0.6 1 23 534 556 534 556 0.98 7 11 9e-07 8.2e-05 23.2 0.9 1 23 566 588 566 588 0.96 8 11 2.5e-06 0.00023 21.8 1.2 1 23 594 616 594 616 0.99 9 11 1.3e-05 0.0012 19.6 0.2 1 23 622 644 622 644 0.98 10 11 9.7e-05 0.0089 16.8 4.6 1 23 650 672 650 672 0.98 11 11 0.00048 0.044 14.6 0.3 1 21 678 698 678 699 0.94
Sequence Information
- Coding Sequence
- ATGAACGTTACGAATGAAGAAGACACGGTAGTAAATACCGTCGCAAAATTACAAGTCAACGGCACCGAGTGTCGggtttgtttaaaaaaatgcaacgaaGTTTGGGAATTGTTTGATCGAAGCGCCGAGGATATACCGAGAAAGTTAATGGCTTGCGCTGCTGTACAGGTGGAAGAAGGGGACGGACTGCCGACGACGATATGCCGAAACTGTCTGAGACTCCTGGAAGTGTCCTACCAATTCAAGCTCCAGGTGGAAAGGTCGGATTCGAAGTTGCGAGAGATCATGATGTTCAAAGTGCCGGTAGGCGAGGATATCCTCGCCGGTTCGACCGACGCCGTCGTCGCGGCTTCGATGGAGGACGAAATAACGCGGGAGCGCGCCATCGTCGACGCCGGAGAATGCGCCGAGTTGTCGAACGCCCTGGACGACGCTGCGGATCGCATAGTGACGTCCCTGAGCGATCATCGCTTCGCCGCTCATCACGAGAGGATCATCTTCGAAATTCAGCCGCCGGGCGAACAGGAGTCGGTTTTGGAGCGAGAAATGAGTCTCGAGAACGAGACGTgcgacgtcgtcgacgagaaGAGCGTCTCGGCGATCGTCTGCCAGGAGAACGGAGCGATCGGCGAGTTGATGGAAAAATACGAGGAGCTCAGAGAGCCTTGCATGGAGGCCGCGAGGCTGAAGTACGAGGAAACAATGGACACGGACGAGAGCGAGATATCGGAGGACGAGAATGCCGAATCGAACGCGCCGAATGTCTCCGAGAGCGTCGAGCGAACGAGCGTCGTCGAGGAGAGTCGCTCGAACGACGCGAGGGACGACGCGTACGAGAGCGACGAGGAGAAGCCACTGATAAATCGAACTCTCAGGCAGAAGTGTCCCCAATGCATAAAGACATTCGCGACGAAGGCGGCGCTCGAGAGGCACGCGGAGATACACAAGACGAAACTGCGTTACGTTTGTTACATGTGCGACAAACAATTTCCGAGCATATCGAAGCTGAAGAGTCACGTTCAGAGCAGCCACGACAGTCTGCGAAACGAGGAGAAGCCCGGGCCGGAGGAGGACACGCGGGAAGGTGCGAGAACCGAGAAACCGGCTCAGCAGCAGTCGGCACGATCGGAGGGCAAGAGGAATCTCAAGTTCACCTGCAAAGTTTGCGGCAAACAATTCACCTATCAGAAGTCGTTCATGACCCACGCGAAGACCCATCCGGGCTACGAGCCAGAATCGACGAACGAGAAGGAGGAAGGAAACGTCGTAACGGCGGAGGAGGATTCCAACGAGCGGGGCAACGAGTCCGAGGACGACGATATGCCGGTCGAGGGACTGCAGTGCACCCAGTGCGGCAAATTATTCGCGACGAAGAGAAACCTCAAGAGGCACATATCGACCCACAGCggattgaaatttcattgctcGACGTGCGGAAAAGAATTCTCGAGGGTCGACAAGCTCAAGGAGCACGAACAGTCGAAACACAACGAGGAATTGTTCGCATCGTCGGACTCGGACTCCGACGATTATACGGATAACGAGAATAAACATCACGACGGGGGCGAGAGTAGGAAGAAGGAAAAACTCACCAGGCCTCATCAATGTCCCATGTGTCCCAAAGCCTTCGCTCAGGAGCAATCCCTCACCAATCACATGGAGCGTCATAAACGCGTCAAGGACACGCAGAAGCGTTTTCTCTGCGAAGTCTGTAGCAAGTGTTTCGCACAGAGTGGATCTTTGGTCGCGCACATGCGTACGCACACGGGCGTAAAACCTTACGTTTGCAACGTTTGCAGCCGAGCGTTTACCAAAAGCACTTATCTCCAGTTACATCTGCGCACTCACAGCGGCGAGAAACCCTACATATGCCAGTATTGCAGCAGAGCCTTCGCGCGGGCGAACACACTCGCTCGACACATAACCATGCACACCGGGGAGGCCAAGTATCATTGTCAGATATGTACAAAGTCCTTTCGACGGTTGACTTCGCTGAATGAGCACACCTACACTCACACCGGACAGAGGCCTTACGCCTGCAAGATATGCACGAAGAGATACAACAACGCTGGTTCGTTGTACGCTCACACGAAGAAGTGCAAGGCCCAGCAATTGTCGGGCGGCACGACGACCTACGCGGTTCCCGTCGACGACGGTATTCATCAGAACGGCGGGCCGGCCACTCAAATGATGGTTTATTCCCAGAGAAAATTGGTCGACGACACCAACGTCAGCCAGGTCCAACCCTCCTCCCAATTCATGATCACCAATGTTCACAATCCCTCGCTCAAGTCCCTGCCCACAAACATAATACCGCAGTTCGCTGTCGAGGATCCGAATTTCTGCACGGTCAACAAACCCTACAAGAATCCCTACTACACGATATATCCGAACATGTAA
- Protein Sequence
- MNVTNEEDTVVNTVAKLQVNGTECRVCLKKCNEVWELFDRSAEDIPRKLMACAAVQVEEGDGLPTTICRNCLRLLEVSYQFKLQVERSDSKLREIMMFKVPVGEDILAGSTDAVVAASMEDEITRERAIVDAGECAELSNALDDAADRIVTSLSDHRFAAHHERIIFEIQPPGEQESVLEREMSLENETCDVVDEKSVSAIVCQENGAIGELMEKYEELREPCMEAARLKYEETMDTDESEISEDENAESNAPNVSESVERTSVVEESRSNDARDDAYESDEEKPLINRTLRQKCPQCIKTFATKAALERHAEIHKTKLRYVCYMCDKQFPSISKLKSHVQSSHDSLRNEEKPGPEEDTREGARTEKPAQQQSARSEGKRNLKFTCKVCGKQFTYQKSFMTHAKTHPGYEPESTNEKEEGNVVTAEEDSNERGNESEDDDMPVEGLQCTQCGKLFATKRNLKRHISTHSGLKFHCSTCGKEFSRVDKLKEHEQSKHNEELFASSDSDSDDYTDNENKHHDGGESRKKEKLTRPHQCPMCPKAFAQEQSLTNHMERHKRVKDTQKRFLCEVCSKCFAQSGSLVAHMRTHTGVKPYVCNVCSRAFTKSTYLQLHLRTHSGEKPYICQYCSRAFARANTLARHITMHTGEAKYHCQICTKSFRRLTSLNEHTYTHTGQRPYACKICTKRYNNAGSLYAHTKKCKAQQLSGGTTTYAVPVDDGIHQNGGPATQMMVYSQRKLVDDTNVSQVQPSSQFMITNVHNPSLKSLPTNIIPQFAVEDPNFCTVNKPYKNPYYTIYPNM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00721443;
- 90% Identity
- iTF_00058891;
- 80% Identity
- -