Afus017972.1
Basic Information
- Insect
- Amblyjoppa fuscipennis
- Gene Symbol
- -
- Assembly
- GCA_963575735.1
- Location
- OY754495.1:5228632-5232249[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.00034 0.031 15.1 0.6 2 23 23 44 22 44 0.96 2 13 1.9 1.8e+02 3.3 0.3 2 23 51 76 50 76 0.84 3 13 0.011 0.99 10.4 1.6 1 23 82 105 82 105 0.97 4 13 7.7e-06 0.0007 20.3 0.6 3 23 113 133 111 133 0.97 5 13 0.00012 0.011 16.5 3.8 3 23 141 161 139 161 0.96 6 13 2.5e-07 2.3e-05 25.0 0.2 1 23 167 189 167 189 0.98 7 13 0.001 0.095 13.6 3.7 1 23 230 252 230 252 0.96 8 13 5.6e-07 5.1e-05 23.9 1.4 1 23 723 745 723 745 0.97 9 13 5.3e-05 0.0049 17.6 0.3 1 23 752 775 752 775 0.96 10 13 0.00017 0.015 16.1 0.5 1 23 783 806 783 806 0.97 11 13 5.6e-06 0.00051 20.7 4.4 1 23 812 834 812 834 0.98 12 13 0.0016 0.15 13.0 5.4 1 23 840 862 840 862 0.98 13 13 2.2e-06 0.0002 22.0 0.2 1 23 868 890 868 890 0.98
Sequence Information
- Coding Sequence
- ATGAGCGTCAACGCCGTGCGCCGATCCGCTCCGCACACAGCCGATAACGAGATTAACGCGTCTCTCGTGTGCTCCGtctgtggaaaaaaattctccagcGAGAAGCGTTACTTCGGCCACTTGAGGATTCACAGTGGCGAAGTTTTATGGTCCTGCGATAAATGTCCGCGCGCCGACCGCTACTTCGATTCGCAGTCCAGACTGAAGACTCACGAGGGCTCGTGGCACGCTCCGTACAGGCCTCACAAATGCTCGAGGTGCGAGGACGTCTTCGACAGAGCCTCGCAGCTGGACTATCACAGGCGAAGCGTACACCTGGGTGAAAAATCGCAAATTTGCCAGATATGCGGCAAGGGTTTTTTCAGGAAAAACGACCTTCGCACCCATCTGAACGTTCATCTCGGCACCGAACAGTCCATATGCGAGATATGCGGCAGAAAATTCAATCACGTATCGAATCTCATAAGACACTGCAGAACTCACGCGGGCGCCAAGCCGTATCCGTGCGCGATTTGCGGCAAGAGATTCACGCAGATAAGCTCGCTCGCGAGGCACAGACGGATACACGATAGGAAAGCGAGCGCGTCGCTGCACGCGGGTGAAAATGATCGGAAGTCGGCCGTTCGAGCCGCGGAGCCCGTTGCggatcgttcgatcgtcgaAATAAAGAGGGTCGCCAGTCGACGGCACTACTGCAGGATTTGCGGCGAGAGCTTTCGATTCATGGTTCACCTCAGGCAGCACGGGAGACTTCACGCGAAAAACGTCGGTGGTCGGGGAGAGAAATTACGCAATTGGGCCGGGAAGGAGCGACAATTCGGTTGTACGGAGATTGCAGAGGCCAAGCGAACCGAGATATCCTCGAACGCGTCGAGCCCGAGTGACTGGCGTGATTTGAACACAGGGCGAGAGAGCAATTCCGATGTGGCTGAACCGGAGCCAGATTCCATAAGAGATCATCTGATGGAGCTGGATCGAAAGATGAACGCTATCGAGATCGAGTCGGAGCGCGACGTCAGTATAAGCATATCTGATATTGTGAGTCCCTACGATTTCGACGATATCGAGCTGACGACCACCGACAATTTGGAGCCAAAGTTCTACGAGGGTTCGAGTTCCGCGTCGAACAGGCAGGGCGCTCTGGAGAAGGACTACGACATAGTTCAGTGTCTCCGCGGTGTGGATTTTACTTCGAACATCGATCCTCACTTGCTGGAGGGAACCAACGATAGATCCACCGTCAAGAGCAACTCTCGGCTGAAATTTCAATCGAGGGAAATAAAAGCATCGACCTCTTTGACCAGAGATCAATACATCAACAAGCGTCTGCACGTCGAGGGCAGCCAGTTGTACATTGAAATCTGCGAATCGGAGTATCCGAAGAGTTCGAGCTTGCAAGCGGTCGAGCTCCAAGAGATCGAGAACGTCGCTCTCTTTCGGGAAGTCCTCGACgtcgccgacgacgaggaggctTCCGAAAGGTCgggaacgaatgaacgaaaaaaatctctcgagaAATCGTCAagcagcgacgacgaggacacGGATGTGAGAATAGATTCGATACAGGCAAAAGAACCAACTTTGCGACTCGTGCAGACGGAAACTGGCGagcaattttacgaattgATAATAAACAATCAATGCGGTGAAGATTTCGAGGGCGTCGATGCCGGAACGGAAGCCGCGGACGGGGAAGCTCTGCAGGAGGACGGTAGTTTCTTGGGGACGAGATTGACGGTTTACGCGGACGATTATCCAGCCGTCGAGGCTTCGGAACGATCGGAGGAACAAGTCCCGAGCGAAGGCGAGGGCAATTCCAGCGAATTTCTTCAGCTTCTGCCGAAGACGGAAAATTACCGAGACTCGCATGCATCGCTCTCGCACAACGACACGGAAATGCCGATGGTACGCCTTGTGCAGAACGAGGacggtgaacaatttttcgaacTGATAAGAGAGCCATTGGAgtacgagagaacgagaaacgCCGGTGATTATCCGCGCGACGAGAGACTTTCGGCGAGTTCGTCGGACAACGATGGCTCGAACATCGCCGGTAAaccgaaaccggaagtcaccaTTGCGCATTCGGTATTCAAGAGAGACAAGAAGGAAAGTTCGACGGACAATCTGCAACGTCCGGCGAAGGATCGAACGAGAAAGTTTCAATGTACCGAATGCGACAAGTCGTTCTCCACCGCCTACAATTTCAAGCAACACGCCGGCACACATTTCTCGGATCAGCAACAATTCCAGTGCAAGGAATGCGGTCTCTCGTTCGCTTGGAAATCCACGCTGAACAAACATCTCGCCGTCAATCATCGACCCGACGGCCCGCAAAAATTTGTCTGCGAAATATGCCCGAAAGTCTACAACACTTTGTCCCAAGTACACgaGCACGTGAAGAGGGATCATCTGAAAGAGCGCAATCACGTGTGCCCGTACTGTGGAAAATCGTTCTTCAAGAAATTCGATCTCAAGACTCACAGCAGAACGCACACGAACGAACGGCCATACGTGTGTCGCGCTTGCGGCAAGAGATTTCATCATCAAAGTCACATAATAAGACACGAGCGTATACACTCGGGCGAACGACCGTACGCCTGCGACATTTGTCAGAGAACTTTCGCGCAGCCGGCCTCGCTGAAGGCTCACAGACAGAGGCATCGCGACGTTAAAATTGATATACTCGATTATCGAATGGACGAGGACGATCCTTTGTCGCTGGCTGTGCAATAG
- Protein Sequence
- MSVNAVRRSAPHTADNEINASLVCSVCGKKFSSEKRYFGHLRIHSGEVLWSCDKCPRADRYFDSQSRLKTHEGSWHAPYRPHKCSRCEDVFDRASQLDYHRRSVHLGEKSQICQICGKGFFRKNDLRTHLNVHLGTEQSICEICGRKFNHVSNLIRHCRTHAGAKPYPCAICGKRFTQISSLARHRRIHDRKASASLHAGENDRKSAVRAAEPVADRSIVEIKRVASRRHYCRICGESFRFMVHLRQHGRLHAKNVGGRGEKLRNWAGKERQFGCTEIAEAKRTEISSNASSPSDWRDLNTGRESNSDVAEPEPDSIRDHLMELDRKMNAIEIESERDVSISISDIVSPYDFDDIELTTTDNLEPKFYEGSSSASNRQGALEKDYDIVQCLRGVDFTSNIDPHLLEGTNDRSTVKSNSRLKFQSREIKASTSLTRDQYINKRLHVEGSQLYIEICESEYPKSSSLQAVELQEIENVALFREVLDVADDEEASERSGTNERKKSLEKSSSSDDEDTDVRIDSIQAKEPTLRLVQTETGEQFYELIINNQCGEDFEGVDAGTEAADGEALQEDGSFLGTRLTVYADDYPAVEASERSEEQVPSEGEGNSSEFLQLLPKTENYRDSHASLSHNDTEMPMVRLVQNEDGEQFFELIREPLEYERTRNAGDYPRDERLSASSSDNDGSNIAGKPKPEVTIAHSVFKRDKKESSTDNLQRPAKDRTRKFQCTECDKSFSTAYNFKQHAGTHFSDQQQFQCKECGLSFAWKSTLNKHLAVNHRPDGPQKFVCEICPKVYNTLSQVHEHVKRDHLKERNHVCPYCGKSFFKKFDLKTHSRTHTNERPYVCRACGKRFHHQSHIIRHERIHSGERPYACDICQRTFAQPASLKAHRQRHRDVKIDILDYRMDEDDPLSLAVQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00721440;
- 90% Identity
- iTF_00058888;
- 80% Identity
- -