Avir000639.1
Basic Information
- Insect
- Altica viridicyanea
- Gene Symbol
- stc
- Assembly
- None
- Location
- GWHAMMQ00000105:319415-324022[-]
Transcription Factor Domain
- TF Family
- zf-NF-X1
- Domain
- zf-NF-X1 domain
- PFAM
- PF01422
- TF Group
- Zinc-Coordinating Group
- Description
- This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 2 1.8e+04 -4.7 3.4 6 10 314 318 311 318 0.69 2 14 2 1.8e+04 -4.2 0.4 4 10 344 350 344 350 0.82 3 14 6e-06 0.053 13.5 13.2 4 19 359 374 357 374 0.93 4 14 0.53 4.7e+03 -2.3 0.6 5 10 399 404 399 404 0.95 5 14 6.2e-09 5.5e-05 23.1 17.3 1 18 410 427 410 428 0.98 6 14 6.2e-09 5.5e-05 23.1 16.1 1 19 468 486 468 486 0.97 7 14 8.2e-07 0.0073 16.3 14.1 4 19 533 548 526 548 0.87 8 14 1.3 1.1e+04 -3.5 2.0 5 10 577 582 577 582 0.93 9 14 0.0033 29 4.8 11.4 1 11 588 598 588 610 0.90 10 14 1.8e-10 1.6e-06 28.0 14.5 1 18 615 632 615 633 0.98 11 14 2 1.8e+04 -4.6 1.1 6 10 662 666 662 666 0.88 12 14 0.00022 1.9 8.6 13.7 1 19 672 689 672 689 0.88 13 14 4.1e-07 0.0036 17.3 15.8 1 19 725 744 725 747 0.97 14 14 0.019 1.7e+02 2.4 16.6 1 18 754 772 754 773 0.89
Sequence Information
- Coding Sequence
- ATGTCTTTTTACGATAATCGGTCTGTGAATTTGGGAGACAATAGTGGTATGGCTGAAGGTGAAAATAATCTTTCTCAAAATTGGTATTCTACTTCTGAAAACCAAAGAAGTCAACGTGTTGATGTGTCGCATTCTACATTAGAACCAACGGCCAGAGAATTTGTTCCAAACGGTGCTATAAAGAAGAAACCTCAATATTCAAATAAATATCGTGATAAAGATGCTGGCAACTGGAGAAATAATTATGGAAGTGGTAGAACATTTAATAGCTCCAGAAACAGTTATAAGTCGCGAGATAATTCAGGAAATTCATCAAATCATAGTTACCATAATGATACTCAGAACAATGAGTTCTCTGAACACTCACGAATGAACGAACTCTATGAAGTTAACGCAGATCAAAGTGAAAACAAATCATCAGCTGGTTCATTGAAAAACTATAGAAATCCGAAAGGTCACGATTATTATCAGGGAAAATCTAGAGGAAGTTATAAAAGTTATGATGATAAAAGAAATAATTACAAAAGGTATAACACTAGTTTTGTATCAAATCATGATGATTCCGGAATCAAAAAACCTGTCAATTACACTCAAAAAAGAACTAATTATAAACCGTTTTACGATTCAAGACATAATCAAAAATTTAGAGATGGAAGTGCTTCTAGTAACTGGAGAAATGATGATGGAAGCTCAGGAAAAAGTTCCTCTTCTTCTATTAACGTTGTTAAATCTAACAAACGATTGAATGCTGCCTCTCAAAGAGAAAGATTAGTCGAAATGATCAATCAACGTGTGTTAGAATGTTTAGTTTGTTGTGAAAAAATAAAAAATTCCGATAAAGTATGGTCGTGTTTGCTATGTTACCATATATTTCATTTAAATTGTGTGGGAGCATGGGCAAAATCATCAAAAATAGAAAATGGATGGAGATGTCCCGCTTGTCAGAATGTCTGCAGTGAAGTTCCTAAACATTACAAGTGTTATTGTGGTAAAACAACCGATCCAAGATTCGAACCAGGTATAATTGCTCATGGTTGTGGTGAGATGTGCTTGAGATCCGGTCGTAATTGTGACCATAAATGTTCCATTCTTTGCCATCCAGGACCATGTCCAGATTGTACTATTATGATTTCAAAATTTTGTGGTTGTGGTTCTACTCAACAAATGGTTAAATGTAGCACTGATATTGAAATTACTTGCGATTCCGTTTGTAATAAACTATTGGAATGTGGATTACATCGATGTGAGCAGATTTGTCATTCTGGATGTTGCCAACCTTGTGATAAAATAATTATACAGGAATGTTATTGTGCCAAAGAAGGCAGAAAAGTACCTTGTTCTGAGGAATATAAAGGAAAGACACAGTATTCTTGTGGTGAAGTGTGTAGTAAGATGTTGTCTTGTGGAAATCATCACTGCCAAGAAGTGTGTCATGAAGGACCCTGTAAAATTTGTTCTAGAGATGTTTCTGTTATAAATACATGTCCTTGTGGAAGGACTCATCTTCGTGAAGCGAGAATATCTTGTTTGGATCCAATTCCATGCTGTGATAAGATTTGTGGTAAACCGTTAAATTGTGGCCAACCTAACGCTCCTCACAAATGTGAAAGTAAATGTCATGAAGGACAATGTCCAATTTGTCCATTAGCTACAGTTGTTCGATGTCGATGTGGTCATATGGATAAAGAAATACCATGTCAGCAACTTACTACTAAAGCAGATGATGCAAGATGCGAGAAAAAATGTACAAAGAAACGGTTATGCGGTAAACACAAATGTAACCAGTTGTGTTGTATAGAAGTTGAGCATATATGTCCTCTTCCTTGTAATCGTTTACTGGCTTGTGGACAACACAGATGTGAACGTACTTGTCATTCCGGTCGTTGCCCACCTTGTATGGAAACCAGTTTTGAAGAACTTTATTGTGAATGTGGAGAAAGTGTGTTATATCCACCAATTCCTTGTGGTACCAAACCACCAGTTTGTAATAAACCTTGTTCGAGAGCAAGACCTTGTGGACACGCGGTTAACCATACTTGTCATACTGGACCTTGTCCACCGTGCACCGTTCTTTGCAAAAGATGGTGTTTCGGTCATCACGAACAAAGATCAGCCATTCCATGCCACCAAGAAAACTTTAGCTGTGGTTTAGCTTGTGGCAAAGACATGCCTTGTGGAAGACATAAATGTATTAAATCTTGTCATGTTGGGTTATGTCCTGTACCCTGTAAGCAGCCTTGTACTGTTCCTAGAGATTTATGTGGCCATCCTTGTGGAAGACCATGTCATGATCCTCCATGTCCTGAAAGTAATTGTAAACAAATGGTTCCAGTTACTTGTGATTGTGGTTTACAAAAAAGTAGTAGACCGTGTTTAGAAGTTGCTGATGAATTTAAAAATATTCAAATGGCACAATTGAAAGAAAAAATGGGAAGTTTATCTACTACTTCTACCATTGATTTAACTGATATTTTAAATGCTCCTAAAAAACCTACTGTCCTGAAGATATTGGAATGTACAGAAGAATGCCGGGTATTGGAAAGAAATAGAAGATTAGCAATAGGTTTGCAGATACGTAACCCAGATTTAAGTCAAAAACTAACTCCAAGGTACTCAGATTTTTTGAGGCAATGGGGAAAGAAAGATCCTCATTTTTGTCAACGAGTCCATGATAAATTAACAGAACTAGTTCATTTAGCAAAAAGTAGTAAACAAAAAAGTAGATCGCATTCATTCGAATCTATGAATCGGGATAAAAGACATTTCATTCACGAATATTGTGAGCATTTTGGAGTGGATAGTGCTGCTTATGATATGGAACCAAATAGAAATATTGTTGCTACTGCTATTAAAGACAAATCATGGTTACCAAGTATGAGTTTATTGGAGTTTTTACAAAGAGAAAATGGCCAACGAAAAGTTCCTGGACCAGTATTAGGACGAGGTGCAGGTGGTAAAACAGAAACGGTATCTTTAAAATTACCAGCTAGAGTTCAAAGGCCGAATACACCTCCAAATGAAAATGCTGACAATTTTAAGTCATCATGGTTATGA
- Protein Sequence
- MSFYDNRSVNLGDNSGMAEGENNLSQNWYSTSENQRSQRVDVSHSTLEPTAREFVPNGAIKKKPQYSNKYRDKDAGNWRNNYGSGRTFNSSRNSYKSRDNSGNSSNHSYHNDTQNNEFSEHSRMNELYEVNADQSENKSSAGSLKNYRNPKGHDYYQGKSRGSYKSYDDKRNNYKRYNTSFVSNHDDSGIKKPVNYTQKRTNYKPFYDSRHNQKFRDGSASSNWRNDDGSSGKSSSSSINVVKSNKRLNAASQRERLVEMINQRVLECLVCCEKIKNSDKVWSCLLCYHIFHLNCVGAWAKSSKIENGWRCPACQNVCSEVPKHYKCYCGKTTDPRFEPGIIAHGCGEMCLRSGRNCDHKCSILCHPGPCPDCTIMISKFCGCGSTQQMVKCSTDIEITCDSVCNKLLECGLHRCEQICHSGCCQPCDKIIIQECYCAKEGRKVPCSEEYKGKTQYSCGEVCSKMLSCGNHHCQEVCHEGPCKICSRDVSVINTCPCGRTHLREARISCLDPIPCCDKICGKPLNCGQPNAPHKCESKCHEGQCPICPLATVVRCRCGHMDKEIPCQQLTTKADDARCEKKCTKKRLCGKHKCNQLCCIEVEHICPLPCNRLLACGQHRCERTCHSGRCPPCMETSFEELYCECGESVLYPPIPCGTKPPVCNKPCSRARPCGHAVNHTCHTGPCPPCTVLCKRWCFGHHEQRSAIPCHQENFSCGLACGKDMPCGRHKCIKSCHVGLCPVPCKQPCTVPRDLCGHPCGRPCHDPPCPESNCKQMVPVTCDCGLQKSSRPCLEVADEFKNIQMAQLKEKMGSLSTTSTIDLTDILNAPKKPTVLKILECTEECRVLERNRRLAIGLQIRNPDLSQKLTPRYSDFLRQWGKKDPHFCQRVHDKLTELVHLAKSSKQKSRSHSFESMNRDKRHFIHEYCEHFGVDSAAYDMEPNRNIVATAIKDKSWLPSMSLLEFLQRENGQRKVPGPVLGRGAGGKTETVSLKLPARVQRPNTPPNENADNFKSSWL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -