Avir008983.1
Basic Information
- Insect
- Altica viridicyanea
- Gene Symbol
- -
- Assembly
- None
- Location
- GWHAMMQ00000331:147856-182601[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 1.3 39 5.0 4.3 1 22 565 586 565 589 0.90 2 11 0.29 9.1 7.0 0.0 1 23 679 702 679 702 0.93 3 11 0.79 25 5.6 0.8 1 23 707 731 707 731 0.90 4 11 0.053 1.7 9.3 2.4 2 23 747 769 746 769 0.96 5 11 0.0074 0.23 12.0 0.0 2 21 775 794 774 795 0.95 6 11 1.4 45 4.8 0.1 2 23 812 833 811 833 0.92 7 11 0.27 8.6 7.0 2.9 1 23 855 876 855 876 0.86 8 11 0.00014 0.0043 17.4 2.2 1 23 882 904 882 904 0.97 9 11 3.4 1.1e+02 3.6 1.8 1 19 922 939 922 941 0.86 10 11 0.00042 0.013 15.9 4.1 1 23 945 967 945 967 0.98 11 11 0.00081 0.025 15.0 3.2 1 21 973 993 973 998 0.93
Sequence Information
- Coding Sequence
- ATGATAACGGACTATGAAGAAGACGCTCACTTTTGTATAAAATGTCACATTACAATCTTGGGCCTAGAAAATTATATTAATCATAGAAAAGCAGGATGTTCGAAAAATTTAGTTGAACCACCAAAATCTCCACTTCCTAGTCAACTCTTGCCGCCTGATGAATCTTTTAATTTAAAAGCTGATGACTTCTTTTCCTCACTGGAATTAAGAAGCAGTTCAAAAAAATGTGAAGTACAATCAACATCTGGTAAAAATTTTAGTGGTATATTAACTAGAAGCAAAACAACAGCTGTTATACAAGCTAACTCTACACATTCTACCAAAGACTCCGTTGAACATCAACAATCCAAATCAGGGAAACACGTATGGATAGGTGGTGATCAATTAAAAGAATTAGGTTATGGTGATAATCAGTCTAAACTTATTAACGCAGTAGATAATTTGGAAAGACGAAAAGAAGAACCACCAACCTTGAAAGTATATGACGAAACTGATGAAGATTCTGAAGAATATGATTATGATGTAGAGGATTCCAGTAGCGATGATCAAGATGCTCCTCCTAGACATCATACAGGAGGAAAATGGAAACCATCATCCCCGATCCAATGGTCGAGAACTACAGACTGGAATTATCCACCTCCAAACTTTACTGGAGGTAAATGGAAACCTAAACGTCCCACATCACCTCCTGCTACTCATACTAAAGGTAAATGGAAACCATCTTTTCCACAAAAAGAAGAATACAACGTACCACCTCCGACTTTTACTGGTAGTAAATGGGTGTCTAAAAAACCTGAAGAAGATTTAGAAAATCCTCCTCCTAGCTTTACTGGTAGTAAATGGGTGTCAAAAAAAACTGAAGAAGATTTAGATAATCCTCCTCCTAGTTTTACTGGTAGTAAATGGGTTGCTACCAAAAAATCTGAACAAGATGTACCACCTTCTACTCACACAAAAGGTAAATGGAAGCCTAAAGTTGACGAAGACCAATTTTTGAATGGTGGAAAAGGAAAATGGAAGCCGCCAGATCCAATAGAAGAAGATACACTTCCTGTAACATACACCAAAGGTAAATGGAAACCAAAATCATTGGAAATAGACGCACCAAGTACTTCAAAAATCGATAAACAGCAGAAATTACAAGAACCATCAGAAACATATACAAAAGGTAAATGGATTCCCGAAAAAATAGACGTGCCAGAAGCAGATTATACAAAAGGAAAATGGATACCAACACAGCCAGAATCCAAATCTGCAAAGAAAATTACAGATAATTCTTTGTTAAGAAAATCAAGCGGATCTGTTCAATATTGGTGTAGTCCCTGCAATCGTCGACTATCTTCAAAAATTGTATATCAACGACACCTAAAATCTGAGCTTCATTTCAAAAGAACTTCTCGTGACAGAGAATTTGATGACACTGATGAATTGTCTCTTTTAAAAGATGCCAGACGAGTGAAATTAAAACCACCAGAAAATATTTTCAGCAACCAGGAAAGTTTGCAAGTTAACCGGAAACGTAATAGGAAAAAACTCTACGAAAAATGTGAAGTTTGTCACTCCAGAGTTCAAAAATCTATGATTGGTAAACATTTGATATCACATTATCATTGTCGAAAAGGAGATATAAGATCTGAAGTAGCTAAAAAGATGGTGTTGGATAATATTCATGGTGTAGTTCTAGAAAGCCCTTTCCAGTGCAGTATTTGCAAGTTTTACTGCAACACCCATCAAGATTTCCTGCGTCACTGGTTATCACCAGACCATCTTAATCGGAAAGCACCTGGTTACTTCTTTTGCGCCTTATGCAAAAACAAGTCAAACGATAGTAAACTGATGTACGAACATTTAGTATCTGCTGAACACATAGAAGTTGTGTCAGTTATTAATAGATCTGTACCTATAATCATCAAAAAGATCAGTCTTTCTCAATGTTCGACGTGCAGAAAAGAATTTTTATTAAACGCTCAACTTATGCAACATTGTCGAAAATTTAATCACGATGACTCGCAGCTGGATAAGTATAAAAATAGTTATGTCTGTGATGTGTGTGGAATGGGTCTTTTATCCAGTGTATCACTAAGGCGTCACAAACAAGCTATCCACAAACAGAAATATTATATATGTACTCCTTGCAACTTAAAATTTAATGATGTATCTGAAGCAAAAAAGCACAGAAAATCGCAACAACATAAATATAAAAGTTTGGAACAAAAGAAAGACGAGAATCTAAAGAAAAAATGTCAGTATTGTGAAGCCTGTTTTGGTAACTTTTTGTTATTAAAGCAACACCTTAGAAATGTACATCCTGACCATAATATTAGATGTCCCCATTGTGGTGCTAACTTCGTTATAGCCCAAGAACTTACAACCCATCTTCGACTTAGGATGTGTAAATTCGAAGATGCACCTGAAAGAACAGAAGACACAATACAGTGTGAGAAGTGTCCATTTTTTTCCACTTCATTATCAGAACTGATTTTCCATATAGCATTACATGAAGAACCTCTTATAAATTATCAAGATGTTTTAAATTCTACCAAAATCAAATCAGTTTTGAAATACAAATGTCCTGTTTGTAAAAAATATTTCCCTAAAGCTTCATTGCATTTTCATATTCGACAACATACTCAAGAGAGACCATATGTGTGCAATATTTGCAACAAAACATTTGCAAGAAAAAATAATTATCAGTTTCATATCAAGAATCACGAAAAAAGAAATTTGACAGCAAAATTAAAGGAAAAACCTGCAGATAAATCATTTCTTTGTTATATGTGTGGAGCTAACTTCAAGAAAAAGCATATGACGAGGCACAAAGATGGTAAGAAATATAGTTGCTCTCAATGTTCTTTTTCAAGTAGAAATTCTCAACACCTACGACGTCATATTCGCATACATACAGGAGCCAAACCTTATAGTTGTCCACATTGTGATTACAAATGTAATAACTTGGAAAATTTAAGAAAACACGTATTATCAACCATTAAACATGTTGGAAAATATCTGTATGAGTGTAGATTTTGCTCCACCAGCTTACCAAAACCTTTCCAAAGTAATTTTGCTAAAGATTTTAAAGTGCATTTAGTCACGAAACATGCAGACATGTTTCACAATACAACTGATGCTGCGTCATATGTAGTTGGAATATATGATGTCCAAGAAGACACCACTCAAGTATATAGCAGGAATCCAGAACACAGTGATCTTGTTGAATCCCATACATCAGAAGAGAATATCCTCAAACTGAATTCCGATCAAGATCCGATAGTTTGTCAACCTGACGTTCCATCAACATCAAAAAATACATTTATCATTCCAAAATATGATTGTGGTACTGATGAAAATCTTCCAGATTCATGGAATTTAGTAGGAAGATATGGTGTTGAAGAATCTTCCGGTACTTTAATACCATTTGAAAGTGATAATGAAACTCTTTTCCAAGATCACTTTTAA
- Protein Sequence
- MITDYEEDAHFCIKCHITILGLENYINHRKAGCSKNLVEPPKSPLPSQLLPPDESFNLKADDFFSSLELRSSSKKCEVQSTSGKNFSGILTRSKTTAVIQANSTHSTKDSVEHQQSKSGKHVWIGGDQLKELGYGDNQSKLINAVDNLERRKEEPPTLKVYDETDEDSEEYDYDVEDSSSDDQDAPPRHHTGGKWKPSSPIQWSRTTDWNYPPPNFTGGKWKPKRPTSPPATHTKGKWKPSFPQKEEYNVPPPTFTGSKWVSKKPEEDLENPPPSFTGSKWVSKKTEEDLDNPPPSFTGSKWVATKKSEQDVPPSTHTKGKWKPKVDEDQFLNGGKGKWKPPDPIEEDTLPVTYTKGKWKPKSLEIDAPSTSKIDKQQKLQEPSETYTKGKWIPEKIDVPEADYTKGKWIPTQPESKSAKKITDNSLLRKSSGSVQYWCSPCNRRLSSKIVYQRHLKSELHFKRTSRDREFDDTDELSLLKDARRVKLKPPENIFSNQESLQVNRKRNRKKLYEKCEVCHSRVQKSMIGKHLISHYHCRKGDIRSEVAKKMVLDNIHGVVLESPFQCSICKFYCNTHQDFLRHWLSPDHLNRKAPGYFFCALCKNKSNDSKLMYEHLVSAEHIEVVSVINRSVPIIIKKISLSQCSTCRKEFLLNAQLMQHCRKFNHDDSQLDKYKNSYVCDVCGMGLLSSVSLRRHKQAIHKQKYYICTPCNLKFNDVSEAKKHRKSQQHKYKSLEQKKDENLKKKCQYCEACFGNFLLLKQHLRNVHPDHNIRCPHCGANFVIAQELTTHLRLRMCKFEDAPERTEDTIQCEKCPFFSTSLSELIFHIALHEEPLINYQDVLNSTKIKSVLKYKCPVCKKYFPKASLHFHIRQHTQERPYVCNICNKTFARKNNYQFHIKNHEKRNLTAKLKEKPADKSFLCYMCGANFKKKHMTRHKDGKKYSCSQCSFSSRNSQHLRRHIRIHTGAKPYSCPHCDYKCNNLENLRKHVLSTIKHVGKYLYECRFCSTSLPKPFQSNFAKDFKVHLVTKHADMFHNTTDAASYVVGIYDVQEDTTQVYSRNPEHSDLVESHTSEENILKLNSDQDPIVCQPDVPSTSKNTFIIPKYDCGTDENLPDSWNLVGRYGVEESSGTLIPFESDNETLFQDHF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -