Avir011484.1
Basic Information
- Insect
- Altica viridicyanea
- Gene Symbol
- Hivep3
- Assembly
- None
- Location
- GWHAMMQ00000048:744290-754988[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 8 4.2e-05 0.0013 19.1 0.5 1 23 189 211 189 211 0.98 2 8 0.0036 0.11 12.9 4.6 1 21 217 237 217 241 0.89 3 8 0.73 23 5.7 0.1 2 20 384 402 383 404 0.90 4 8 7.4e-06 0.00023 21.4 2.1 1 23 996 1018 996 1018 0.99 5 8 5.4e-06 0.00017 21.8 4.7 1 23 1024 1048 1024 1048 0.92 6 8 6.4e-06 0.0002 21.6 1.2 2 23 1533 1554 1532 1554 0.97 7 8 0.00044 0.014 15.8 2.4 1 23 1560 1584 1560 1584 0.92 8 8 0.0014 0.044 14.2 2.7 1 23 1602 1626 1602 1626 0.93
Sequence Information
- Coding Sequence
- ATGGAAAATATTGATAATTACTTGCATAAGAAATTTAAAAAACAAGTAAATGTTGAATCCAAGATACAAAATGACAAAGAGAACAAGAATCTTGTTCACTTGGAACAAGACGCGGAAAAAATCGTCAAGAAAGAAAACCATTACCACCACCACCAAGTCGACCAATACCCGTACGAAAATCAAAATCAATGGTCCGACAATAAAGACGCTGTGCCAAATCAAAGTACAAATAGCTCCTCACTTACAGTAAATCCTAACTTTGTTAAGTCTTCCATATCACTAGGAATCCAACAATCTTCGAACTCTTACATATCATATGTAGTTTCGAAACAACTTGACCATCAATCAGCTAGTTTTGATAAGAAATTTAAAACCCAGACCAACTATACAGATAGTACGTCTTCCATTTTAGATAATGTTTATCCTACAGAAAATTACAAGTATACGGAGGAAGCATATGTTCCTTATAATAATCAAGATGAATTTTCTTTAAAAACTGAAGAACTATCTAATTTAAAACCTGAAGAAATTCAACCCGCACCTGATAAGAATTCCAGCGGAAAATATGTGTGTCCGTACTGCAATCTAGTCTGTTCAAAACCCAGCGTTCTGCAAAAACACATTCGAGCCCATACTAATGAAAGGCCATATCCCTGTGAAAGTTGCGGTTTTTCTTTCAAGACCAGATCGAATTTGTACAAACATTGTAGATCTAGAACCCATGCTAATAGATTAAGAGGGACTAAGTCTCAAGATTCTGGTAGCGAAATCGAAGGTCCAAAAACACCAAATCATTTGGAACCCAAGGAAGAACAACAGAAACCTTATAAACCCCGATTTCACACTGCCAAATTCGACAATATGCCCCTAGAAAATATAGAAGAACGCAATTCCACCTCAGAATTCGTTTCGCATCATATAAACGAAATAATAAGTAGGAATAATTTAGTGGTAAGCTCTACACAAAAACAAGTTCCTCACCTCGAATTTAGCTATAATAAAGAACCAGTGTACGAAAGACCCATAGATGAACCGTTAAATTTGACCAATAAGAATCGAAAACGGTCTATGAGTGAAGTATCAGAACCAGTGATTCAAAAAAGTCTGATTAAAGAACTGTTACTGAAAAACCTCTCTTCTTCTGATATGCAGTGTCCGTACTGTAAAATGATATTTCAAACTGTTACAGAATTAGATGTACATAAATATAAAAGTTGCAAAGGAAAACCATCTAGTGCTAAATATACAAGGAGTAGTTCAGTGAATGTTGCTTCTATTTTAACACATAATAAAAATGCTTTTGATACCATTCCTCAGATGCAAAACACAGTCTTCCCGTTAAATTCTCCTGGACCATTTTTGGGAAAAACTCGCTTAATAGAGAGTGATAAAAGTAAATCTTTTTCATTTGATGCTGGTAATATGCCATTAATGAGTCCAGGAGAGCCTTCTCCAAATTATCTTCTTTCACCAATACCTTTTGATAGAGATAAAAAGTCAGGTGTAAAATTGTTTGGAGGTGAGGTAAAAATTCATTCGGCAGGTGAAACAAAAAGCTTCAAAATTGATGGTAAAGAAGATAATTACGAACAAGATAATAATTATGTAGATTATGGCAGTAAATTAAGTGAAAATCGTGTAGTAAAAACTAGTTTACAATCAGGTGGAACTGTTTTAACAAATTCTAGTAACTATAAACAGGAATTAAAAACTTCACAAGAAGTTATTATGATATCTCCAAAAATTGATATTATTAATTTCAATACACCAAGATTTAATTTTGAAAAGCCTTTAGAAATAAGTACAGAAAAAGTTAATGTACCACAATCACCAAAATCGTATCCAGAAGAATCAAGTCCTTTGTATAAGAATATAATGGACTTTAGTCAGAAGGCAATTAAAATGCTTACACCCAATATAAAAGCACCTACAATTACAGTTTCTTCCAGCAAAAATTTAGATTTAAAAATATCCAGTCCGAAACCGAAAATTGTGACTGATACTGGTTGTTACGAACCAAAACAATCTAATTTATACAATCCTCTTAATTTATATGTTAATGGAAAAGTATTTAGACATGTACCTGGAATGCCCGGACCAGTAGCAGCAGCTGAAGCACCTGATTACAGAACTAATATAATAACAGTTGCAAAATCTGGACAATCTATAGCTCCTCTTTCTCCACTTACCTTTGAACGACCTACAAAATATAATGACACCCAACATGAAAAACCATTATTTCTACAACCCGAAAAAGTTCCTGAAAGATTAATTAAATCACCTATTAGTACCATACAAAGTAAATTAACAACTAACAATTTTTTACAACCAGATAAAATCAATGACCGATTAATAACAAAATCGCCAAAACTCGAAAATATATCACCACCACCACCAAAACCAATCATTAGTAAAATAATAGAATCAAAGAATGATACAAAAGCTACAACAGAAGAATTAAAAAAGTTCGCACGACCAAACAGTTTAGCATTGAAACCTACGATAGCTTCATTAAAACAACATCACGGTTTAACTCCTACAATGTTTAATCAAATTCTAATAAGTCCGGATACTCCCAGAGTAGCAAAGAAATATGCTGAGCATTTCCTACATGGCAATTATTTTAGTTATTTGGGTTTGAAGAGTTCTACAAGACCTGTTTATTGCACCCTAAATAAAACACAACCATTTTACGTACCTTTTTTTAAAAAATTAAGTATGTATTCCGAGTGGAGGCAACAAGATACTAAACAAGATAAATTCTATGTTAGTCATTACGATTCCAGACAGAAAAGTCAGAGTTATAGTATAGCTGGGAAGACTTCGGCGAATTTAATCATCCATTCTAGTTATAAATTTATTATATCCGAAACGTCGTCGTCGCAATCGGAAAAAGATGATGAGCCTCAAAAGGCAACTGCAATTCTAGGAGGGTATGAGTGCAATGAGGATTACATCTACGTTCGAGGAAGAGGGAGAGGTCGTTATGTATGCGATCAGTGTGGAATTCGCTGTAAAAAACCGTCAATGCTTAAAAAACACATTAGAACCCATTCAAATGACAGACCATACACTTGTAGTCATTGCAACTTCAGTTTTAAAACAAAAGGCAATCTAACAAAACATATGAAAAGTAAAGCACATTCCAAAAATTCCACAACTAGCAACGGTTCATCATCTTCTTCAACTCATCAAAGTACTCAAAGTTCAGACTCTGAAACTGACGATAGTGGAATGGATAGTAGTGATGAATCAACTCGGCAACAAGAACATGAAGCAGCTTACGGACTACTATCTCTTTCTCAAAAACCAACTCAACCATCAGGAGGAGACAGTTCACAAATGCGCAGTAAAAGTCCTTCAGAAACTTTTATGACCACGGAAGAAATTGCTCATGTAACAAAGGCGAATTACGCGAGAAATAAATTTTTAGACGAACAAACGTCTATTCGCAATTCAGCATTTAATTCTAAAAATGTAGAAGACGTAAACAGCTCTACTTTAAGTACAGAGACAACTGAGAGTCAGAATATCAGAACATATTTGGGAATGGGTAGTATAAATAGACCGCTCACGTATCCGTATACGTCGATATTGTTGCCTGTTGAAAAAGAAATACCACCACCGCCACCACTACCACCTGCAAAAGTGGTATCAGACACAAGAGTTTCTGAGAGTCTCGAAACGAAGTCTATAAAACAATTTCACGTTATTCAAAAGTATGTACCACAAACAAAACTATCACCAAAACTACCAGAGAATAACGTAAGGGAATCTGTGCAACCTAGAAAAACCGAACATGAATATTCTTCCATGGACCATGTTACTTTAAATAATATCAAAAATGTAACAACATCTAATAGACCGTTACCTACATTAAAAGTGAATGATGTTGTCGTAACTAATGATAATATTAGTGATATAAGAAAACGGAAGTTTTTCGTAACTGAACCACCCTATAAACATAAGGTACAACGAAATGATGAAGTTATGGATTTATCAATGGCAAATAATCAACAAGAAAAATTGGTGAATGGTGTAATAAATGAAAGGACGTTAAATAATTTTAGAATCAATAAAAATATCGATAATTACACATTTACAGGACAAAATAAAAATGTTGATACGTTTATACCTACGGAACCTCAGAATAACGTTGATGATCTTAGACCAATTGAAACTCAAAAAAACGTTGCTAACGAAATTTTTAATACCTTACAAAAAGATCATCCTCAAAGATTTGAAATAAATGAAGATGAAGAAGATGTTATCTTTAATAAACCAGAGTCGACCAATAACGGTACTGTGATAATTTTAAGGCCCCTGCAAACTGAAGAACAAGGATGTTTCCATGATGTGAACAACGAAGAATCAATAAAAAGTGGGGAATTCGATAATAGTGCAATGGAGACTCTTGCGGATATAGCAACAAAACAAGTAAAATTAGAAAAAAATACATTGGCTAAAAGTGTTGCAACCGAATTTTTAAAGTTGGCTACAAAAAATGAAAATATTGATAGTTCCCGGGATCCTGTAAATTTTGGGCCAATTAATAAAGATGTTAATGATATTATTGTGAAATCAGAGGGAAACAAAAGTTGTACTATATGTTCCAAAAGCTTCAATAAACCATCGCAACTAAGGTTACATATGAATATACATTATTTAGAAAGGCCTTTTCGCTGTGATTCTTGTTCGGTTAGTTTTCGAACCAAAGGACATTTACAAAAACATGAAAGAAGTGCTAGTCATCACAATAAGTTGTCATCTTCTCCGACTCTTTCGTCATCTGAGCCGAGGCCATTTAAATGTTCAGATTGTAATATAGCATTTCGAATTCACGGACATCTCGCCAAACACCTGCGCTCCAAAATGCACATTCAAAAACTTGAATGCCTCGCTAAAATACCTTTTGGACTCTACGCTGAACTTGAGAGATCCAATAGTTTGCTAACAGAGATAAATACTTGCGATGGGGACCAATGTCTTGAAAGTTTAAAAAATTTAGCGAAAAAAGTGTTTATTAATGACCCTAACAAGTTAAATCAGTTGGAGCCAAGAGATAATATTTGCGCAGATTAG
- Protein Sequence
- MENIDNYLHKKFKKQVNVESKIQNDKENKNLVHLEQDAEKIVKKENHYHHHQVDQYPYENQNQWSDNKDAVPNQSTNSSSLTVNPNFVKSSISLGIQQSSNSYISYVVSKQLDHQSASFDKKFKTQTNYTDSTSSILDNVYPTENYKYTEEAYVPYNNQDEFSLKTEELSNLKPEEIQPAPDKNSSGKYVCPYCNLVCSKPSVLQKHIRAHTNERPYPCESCGFSFKTRSNLYKHCRSRTHANRLRGTKSQDSGSEIEGPKTPNHLEPKEEQQKPYKPRFHTAKFDNMPLENIEERNSTSEFVSHHINEIISRNNLVVSSTQKQVPHLEFSYNKEPVYERPIDEPLNLTNKNRKRSMSEVSEPVIQKSLIKELLLKNLSSSDMQCPYCKMIFQTVTELDVHKYKSCKGKPSSAKYTRSSSVNVASILTHNKNAFDTIPQMQNTVFPLNSPGPFLGKTRLIESDKSKSFSFDAGNMPLMSPGEPSPNYLLSPIPFDRDKKSGVKLFGGEVKIHSAGETKSFKIDGKEDNYEQDNNYVDYGSKLSENRVVKTSLQSGGTVLTNSSNYKQELKTSQEVIMISPKIDIINFNTPRFNFEKPLEISTEKVNVPQSPKSYPEESSPLYKNIMDFSQKAIKMLTPNIKAPTITVSSSKNLDLKISSPKPKIVTDTGCYEPKQSNLYNPLNLYVNGKVFRHVPGMPGPVAAAEAPDYRTNIITVAKSGQSIAPLSPLTFERPTKYNDTQHEKPLFLQPEKVPERLIKSPISTIQSKLTTNNFLQPDKINDRLITKSPKLENISPPPPKPIISKIIESKNDTKATTEELKKFARPNSLALKPTIASLKQHHGLTPTMFNQILISPDTPRVAKKYAEHFLHGNYFSYLGLKSSTRPVYCTLNKTQPFYVPFFKKLSMYSEWRQQDTKQDKFYVSHYDSRQKSQSYSIAGKTSANLIIHSSYKFIISETSSSQSEKDDEPQKATAILGGYECNEDYIYVRGRGRGRYVCDQCGIRCKKPSMLKKHIRTHSNDRPYTCSHCNFSFKTKGNLTKHMKSKAHSKNSTTSNGSSSSSTHQSTQSSDSETDDSGMDSSDESTRQQEHEAAYGLLSLSQKPTQPSGGDSSQMRSKSPSETFMTTEEIAHVTKANYARNKFLDEQTSIRNSAFNSKNVEDVNSSTLSTETTESQNIRTYLGMGSINRPLTYPYTSILLPVEKEIPPPPPLPPAKVVSDTRVSESLETKSIKQFHVIQKYVPQTKLSPKLPENNVRESVQPRKTEHEYSSMDHVTLNNIKNVTTSNRPLPTLKVNDVVVTNDNISDIRKRKFFVTEPPYKHKVQRNDEVMDLSMANNQQEKLVNGVINERTLNNFRINKNIDNYTFTGQNKNVDTFIPTEPQNNVDDLRPIETQKNVANEIFNTLQKDHPQRFEINEDEEDVIFNKPESTNNGTVIILRPLQTEEQGCFHDVNNEESIKSGEFDNSAMETLADIATKQVKLEKNTLAKSVATEFLKLATKNENIDSSRDPVNFGPINKDVNDIIVKSEGNKSCTICSKSFNKPSQLRLHMNIHYLERPFRCDSCSVSFRTKGHLQKHERSASHHNKLSSSPTLSSSEPRPFKCSDCNIAFRIHGHLAKHLRSKMHIQKLECLAKIPFGLYAELERSNSLLTEINTCDGDQCLESLKNLAKKVFINDPNKLNQLEPRDNICAD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -