Avir014537.1
Basic Information
- Insect
- Altica viridicyanea
- Gene Symbol
- zag-1
- Assembly
- None
- Location
- GWHAMMQ00000700:33065-36943[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.00019 0.006 17.0 2.0 1 23 100 123 100 123 0.96 2 10 0.0012 0.039 14.4 4.1 2 23 176 198 175 198 0.94 3 10 0.00021 0.0066 16.8 2.5 1 23 204 226 204 226 0.98 4 10 0.0038 0.12 12.9 3.8 1 23 232 254 232 254 0.96 5 10 0.0022 0.069 13.6 1.6 1 19 260 278 260 280 0.94 6 10 2.9e-05 0.0009 19.6 1.4 1 23 291 313 291 313 0.98 7 10 0.00029 0.009 16.4 6.3 2 23 320 341 319 341 0.96 8 10 4.8e-05 0.0015 18.8 1.6 1 23 347 371 347 371 0.98 9 10 2.1e-06 6.7e-05 23.1 2.3 1 23 385 407 385 407 0.99 10 10 0.033 1 9.9 4.6 1 23 413 436 413 436 0.98
Sequence Information
- Coding Sequence
- ATGTTTTTTATTTACTTTTGTATCTTGCAAATGTCTGAATTAGAGGAATTTTGTTGTGTTTGCGTTAAAAAATATCCGCACTTAGAAAATATAAATGATTTTGATGAAAATAATGTTAAATATAAAGATAAATTATTGGCCTGCACTAGAGAAGTGAAATGGTGTGATGAATACAACATTTGTAAAAATTGTATAGAAAAACTTGATTTAGTTTACAATTTTATTCAGATCTGTTTACAAAGTGAAGTATTAAGAAATGAACAATTAAAATTAATACACGATGCAAAATTAAAGGAATTCTTTTGTGAGGAATGTAACAAACAGTTTAAAGAAAAAAGAACCTTATCAATTCACTTGAAAAAAGTTCATAAAAAACAACAGAATATCATTAAGACAGAACTCAAAGAAATTCAGGATAATATAAGTGAAAATGATGAAAATGTAAATGATTGTAATTATTCCAGTGAAGAAGAATCTTCGCCTAAATTGGTTAAAAAACAGTACGGTAAACGTAAGACACCTTTAACCTGTGAATATTGTGGAAAAACTTTTAATAGAAGACAACATCATTCAGCTCATATTCGTGCAAAACATACTTTTGAAAAACCATATAAATGCGACCTTTGTGACGCAAAGTATACAAATTCGCATAGTTTACTAGTTCATAAAAGAAATCACAACAATGAGAAGCCATTTATTTGTTCATATTGTGGTAAAAGTTTTGTTTGTTCAGGAGATTTGTATCACCATAGTAAAATTCATTTAAACAAAAGGGAATACAAATGTAATTTATGCGAAAAATGCTTCAATACTGCCAGTATTCTAAGAACTCATAAAATTTGTATGCACTTAGATCCAAAAGATTGGAAATACATTTGTAAATTCTGTGATAAACGTTTTCCTATAAACTCAAGCTTAGTAACACATCAAAAAAGACATATAGGCATAAAAGAATGTATTTGTCATATTTGTGAAAAGAAGTTTTTCGATAAATCAGAATTATCAAAACACTTTCGAAGTCATTCCAACGAAAAGCTCTTTAAGTGCAATATTTGCAATACTAAAGAATACAAAAATAGTTATGCATTAAAAAAGCACATGAAAATAATACACGATATTGGTACTATAAAAATAACAAAACCTGAAAAGAAATTCACATGTCCAATGTGCCCCAAAGTATTTGCTTTTAATAACAAATTACAAAAACATATTTGTACCCACACGGGTAATAAACCATTCAAGTGTCAATTTTGTGAAAAAAGGTTTATAGAGAATTACTATAGGAAATTGCATTTAAAAAAGAAACACAATGTAGAAAGTAGTGACGAGCCGTTACTTTAG
- Protein Sequence
- MFFIYFCILQMSELEEFCCVCVKKYPHLENINDFDENNVKYKDKLLACTREVKWCDEYNICKNCIEKLDLVYNFIQICLQSEVLRNEQLKLIHDAKLKEFFCEECNKQFKEKRTLSIHLKKVHKKQQNIIKTELKEIQDNISENDENVNDCNYSSEEESSPKLVKKQYGKRKTPLTCEYCGKTFNRRQHHSAHIRAKHTFEKPYKCDLCDAKYTNSHSLLVHKRNHNNEKPFICSYCGKSFVCSGDLYHHSKIHLNKREYKCNLCEKCFNTASILRTHKICMHLDPKDWKYICKFCDKRFPINSSLVTHQKRHIGIKECICHICEKKFFDKSELSKHFRSHSNEKLFKCNICNTKEYKNSYALKKHMKIIHDIGTIKITKPEKKFTCPMCPKVFAFNNKLQKHICTHTGNKPFKCQFCEKRFIENYYRKLHLKKKHNVESSDEPLL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00057198;
- 90% Identity
- -
- 80% Identity
- -