Avir014337.1
Basic Information
- Insect
- Altica viridicyanea
- Gene Symbol
- Prdm15
- Assembly
- None
- Location
- GWHAMMQ00000692:185872-193935[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.23 7.3 7.3 0.3 2 23 199 220 198 220 0.96 2 12 0.026 0.81 10.3 2.8 2 23 228 250 227 250 0.95 3 12 4.4e-05 0.0014 19.0 1.4 1 23 358 380 358 380 0.98 4 12 0.026 0.83 10.2 3.4 1 20 384 403 384 405 0.93 5 12 7.7e-05 0.0024 18.2 1.5 2 23 411 433 410 433 0.94 6 12 0.58 18 6.0 2.0 2 21 436 455 436 456 0.92 7 12 9.9e-06 0.00031 21.0 1.2 1 23 464 486 464 486 0.98 8 12 0.14 4.4 7.9 3.6 3 23 496 517 495 517 0.89 9 12 9.6e-07 3e-05 24.2 1.2 1 23 522 545 522 545 0.97 10 12 0.0024 0.075 13.5 2.3 3 23 552 572 551 572 0.97 11 12 1.4e-05 0.00044 20.5 2.2 1 23 577 600 577 600 0.96 12 12 0.001 0.033 14.6 2.9 1 23 617 640 617 640 0.95
Sequence Information
- Coding Sequence
- ATGCAGATATGTGGTATTTGTGGTGGTTACCACGATCCTATTAATTGTGATATAGTGCAAGTTGTTTCTCATATTCCTGATAAAGTTATCCCTTCAAAAGCAAAATTAACATTACCGGAAGATTTAGAATTAAAATTAATGGCAGATGGTAGCTATAATATAGCTGCAGCGTTTCCTCTAGGTAAAGGAACTCAGTTTGGGCCTTTACAAGCTCAAAAGTTATGTTCTTTGTTGCCTGATATTTCTTTTCCTATAAAAGTATTTAATAGAATAGAGGAAAATTTTTCAGAGTATTATTTAGATACTACAAGTGAGGCGGAATGTAATTGGATGATGTTTATTAGTCCTGCCACTGATTTTCAAGAACAGAATATTATTTGTTATCAGGAAGGAGAAGATATTTATTTTGTTACAATCAGAGATATATGCGAAGGAGAATTTTTGAAAGTTTGGTATTCTCCATATTATGCCACAAAAATGCAAAAAGATGTATTAAATCCGAAAATTACTAAAAATTCTATCGATATAAAAATTGATGATAATGTTGATATATTAATTAAAAATAAAAAAGGTATCACTTCGAGAGAAATGTGGAACTGTAAATTTTGTGGAAAAATAGAAAAAAGTGTTTCACAATTTGCTCTACATTTATTAACACATTATGAAAAAAATCCTCAAAAGTATTGCAAATTGTGTAATATTTCATTTTATAAAATGAATACATACCAAAACCATATGAAATACTTCCATGAACCGGATATTAGAAAAACGCCATTACCAGCACAAACAAATGCACTATCACATAATTTAACTAAAAATCACACCGAACAATCTTCTCAAAAAGAAAATTACTTTGGTGGTCCATTATTACTTAATGAATTATTAAGTGATAGTATGGATAATATGTTACCAAATACAGATATGAATAATTTAGATTTATCCGCTATTGAAAATCAATCTAATTTATTCGAAAATGAAAATTTAAATTTAAATATGGATTCGATTTTGTCTGAAAATGTTAAGGATTTGGATAATTTTAATTTCGAATTAGTTGAAAGTGATAGTGACCAATTTGTTTGTGATATTTGTTTAAAAACTTTTAAAAAATGGCAAAGTTTTAAAACACATCTAAATGTTCATACTGGAAAGTATTCGTGTTTTGAATGTAAAAAGGTTTATGCACGAAAAGAGAATTTCGACAATCACAGTTGCAAACTTTTTTATAAGTTAAAATGTTCTGAATGTGACAAAATTTTCTATCAAAAAAAATACCTTGTTCAACATATAAAATTTTCTCATACAAATTATTGCAAATCTTGTAAACAGATATTTGATACAAAGGAATTGCTTGATCAACATACCTGTTCAAAGGAAATTAATAATATTAATTTTTCATGTGATGTGTGTTTAAAAACGTTTACAGATAAAAATAATTTAATAACTCACAGAAAAATTCATGAAAAAACAGGAGAAGAAGAGAAATATTGTTGTATTATTTGTAATAAATTATTTGCATCTAAAAAAACCTATGACAAACATTATAGGCTCCATAGTGGATATGAATATAAATGCAATATTTGTGATAAAATTTTTAAAAGACAAGATATGTTGAAATATCATCTGATGAATATACACACTTCTAATCGGGAAATCTGTCTGGTTTGTAATAAAGAAATAAAATCAAAGAAATTATTAAAACATCACATGAAAATTCACAAAGGACAAACATTTAAATGCCCAAAATGTCCAAAAGTTTACACTCAGGCACAGAATTTCAATCGACACTTTAAAAATAGTCACGATCAAAATCGAAATGTTCAACAGCTTCTATCGAATATGGAGAAATGTTATTCATGTCCGGAATGTGACAAAAAAATTAAAACAATGAACTCGCTTAAACGACATCTACATAATTTCCATCCTGAAAGTAAAATCAGTTATAAAAGTATTAGTATCAAAAAAACAAAACAGAAAAAACAATTTGATTTTTTGAAAGAAGTAGACGACTCAGTTTTAGATCTGAAACAAACAATCGAAACATTAAATTTCAATACTGATGAAATCAATCGCGAAATTACCATTGAAATTGATAAATTATTAAACAATCCCGATAATTTCGGTAGCGACAGTAACGATAGATTAGTGGAAAGTTTGATTAATACAGCCGTTCGTGATAACAATTTAGAGAATAGAAATCACGAAAAAGATGCTTTGTTATCAATGCCAGATTTAGACGTCGATTTAACTTATCGAAATCATTTAATAAAATAG
- Protein Sequence
- MQICGICGGYHDPINCDIVQVVSHIPDKVIPSKAKLTLPEDLELKLMADGSYNIAAAFPLGKGTQFGPLQAQKLCSLLPDISFPIKVFNRIEENFSEYYLDTTSEAECNWMMFISPATDFQEQNIICYQEGEDIYFVTIRDICEGEFLKVWYSPYYATKMQKDVLNPKITKNSIDIKIDDNVDILIKNKKGITSREMWNCKFCGKIEKSVSQFALHLLTHYEKNPQKYCKLCNISFYKMNTYQNHMKYFHEPDIRKTPLPAQTNALSHNLTKNHTEQSSQKENYFGGPLLLNELLSDSMDNMLPNTDMNNLDLSAIENQSNLFENENLNLNMDSILSENVKDLDNFNFELVESDSDQFVCDICLKTFKKWQSFKTHLNVHTGKYSCFECKKVYARKENFDNHSCKLFYKLKCSECDKIFYQKKYLVQHIKFSHTNYCKSCKQIFDTKELLDQHTCSKEINNINFSCDVCLKTFTDKNNLITHRKIHEKTGEEEKYCCIICNKLFASKKTYDKHYRLHSGYEYKCNICDKIFKRQDMLKYHLMNIHTSNREICLVCNKEIKSKKLLKHHMKIHKGQTFKCPKCPKVYTQAQNFNRHFKNSHDQNRNVQQLLSNMEKCYSCPECDKKIKTMNSLKRHLHNFHPESKISYKSISIKKTKQKKQFDFLKEVDDSVLDLKQTIETLNFNTDEINREITIEIDKLLNNPDNFGSDSNDRLVESLINTAVRDNNLENRNHEKDALLSMPDLDVDLTYRNHLIK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -