Basic Information

Insect: Altica viridicyanea
Gene Symbol: -
Assembly: None
Location: GWHAMMQ00000960:413716-419890[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 1.4e-06 4.4e-05 23.7 1.9 2 23 359 380 358 380 0.97

2 8 0.00045 0.014 15.8 1.4 2 23 390 411 389 411 0.97

3 8 5e-05 0.0016 18.8 1.6 1 23 417 439 417 439 0.98

4 8 0.0063 0.2 12.2 1.9 1 23 445 467 445 467 0.96

5 8 2.4e-05 0.00076 19.8 0.9 1 20 475 494 475 495 0.96

6 8 3.5e-05 0.0011 19.3 1.4 1 23 509 531 509 531 0.98

7 8 0.0022 0.07 13.6 0.5 1 23 537 559 537 559 0.97

8 8 2e-05 0.00064 20.0 0.7 1 23 565 587 565 587 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	1.4e-06	4.4e-05	23.7	1.9	2	23	359	380	358	380	0.97
2	8	0.00045	0.014	15.8	1.4	2	23	390	411	389	411	0.97
3	8	5e-05	0.0016	18.8	1.6	1	23	417	439	417	439	0.98
4	8	0.0063	0.2	12.2	1.9	1	23	445	467	445	467	0.96
5	8	2.4e-05	0.00076	19.8	0.9	1	20	475	494	475	495	0.96
6	8	3.5e-05	0.0011	19.3	1.4	1	23	509	531	509	531	0.98
7	8	0.0022	0.07	13.6	0.5	1	23	537	559	537	559	0.97
8	8	2e-05	0.00064	20.0	0.7	1	23	565	587	565	587	0.98

Sequence Information

Coding Sequence: ATGTCTAGTTTAGAGAATTCCAAATATGAGGAATTGTGCAGGCTCTGTGCCACCAAAACTGAAATGTTTCTAGCTATAAATATTTTTGAAGATGAAGGTACTATTCGGCAGATAAGTATAATTGAGGATATTATCACTGAGATATATTACAACATTCCTTTACAGATCCAACAAACTGACGAGCTTCCGAAGATGATCTGTGAAACTTGTTTGTATAAATTGGAATTATTTAGTGATTTTAGAGAACGTTCTGTTCGCACTGAAAAATTATTAATAGAATTATATAAAGAAATTTCAAATTGTATACAAAATGGTCAACAAACATGCTTAGTTCCTATAACTAGTGAAATAATTATATTAACACCAGACATTAATTCGCAATCCTTGGAAAATATTGTCACTAATAGTTTAAACGGTACTGAATTTTCTAATCAAACATTTAATACCCAGGAAACAGTAGTGGTAGATTCTAATTCAGAAGATAATTTAAGTTTGATGCAAGAGCACCAATTATTAACAGAACAATTTAGATTGCAGCAGGAGTTACAACTGAATAGTTCTTCAGTTGCTTTACTTAGTGATTTTAAGGAATCCTTGCAAGTAAAACTGGGTCTACATTTTGAAGAAGAAAATAAACTGCTTACACTAAACGATTTATCTGAAAAAACTACAACTACAGAAAATTATAGAAGAGATGATAGTAGCAGTAGCAATAGCAATAGTATGAATTCCATACCATTAGAAAATCATTATAACGAAATAACCCAAAGTAATCCTTCAGATAATTTAAATAATACAAATAACGACTCCATATTAGCATTAAGTAATAATAATGTTTGTAACAAAAGTTCACAACAGAGATGTGAATATGATGTGGTTTATTTTGAACATTTCCATAAATGTTTATGTTGCAAGGCTAGTGAGTGGAGTAGTGATGATAGCGATCCTGAAAATGAGATGAATCGTTTAGACGATGATGATGAAGCAGGAAGGACAGATCATCAAATTCAAACTAATAACGCAGAAAAATCTGATACTATTGTTGTGAAAAAGGCACAAAATTCTAGTGGGAAAGTCTGTACAGAATGTGGAAAAACTTATAAAACAAACTATAAACTCTCTGAACATATGCGCAAACATACTGGTGAAAACCGGCGGTATGAGTTGTCATGTCCAACTTGTGGTAAAGGATTTCAATGTAAAAGTTATCTGATGGTACATCAACGTGTTCATTCTAATATTAAACCATTTCCTTGTACAACTTGTGGACAAAATTTCAAAACTAAACAATCTCTTTTGGATCATACAAATAGGCATTTAGGAGTTAAACCCCATATCTGTGATATATGTGGTCGAGGATTTATAACAAAAGGTCTTTGTCGAGCTCATAAGAAAATTCACTCTGGTTTAGATAACCGAAAATACTCGTGCGATGTTTGCGATAAAATGTTTGTATCAAAAAGTTATTTACAAACTCATCACGAATTCATACCGGCGAAAAACCATTTATGTGCGAGAAAATCATTTGTATGCGAAATGTGTGGAAAGGCGTTTGCTAGAAGGGATGCGTTGAGATGTCACAGGCGATCTCATACTGGAGAAAGACCGTATAGTTGTGACTTATGTGGACAAACTTTTACTCAGTTTACTCCAATGGCAATTCACAAACGACTGCATACTGGAGAAAGACCGTATTCATGCGAAACTTGTGGAAAGGCTTTTGTGTCTAGATCGACCATGATGTCTCATGCCAAAAAACATGTGTGA
Protein Sequence: MSSLENSKYEELCRLCATKTEMFLAINIFEDEGTIRQISIIEDIITEIYYNIPLQIQQTDELPKMICETCLYKLELFSDFRERSVRTEKLLIELYKEISNCIQNGQQTCLVPITSEIIILTPDINSQSLENIVTNSLNGTEFSNQTFNTQETVVVDSNSEDNLSLMQEHQLLTEQFRLQQELQLNSSSVALLSDFKESLQVKLGLHFEEENKLLTLNDLSEKTTTTENYRRDDSSSSNSNSMNSIPLENHYNEITQSNPSDNLNNTNNDSILALSNNNVCNKSSQQRCEYDVVYFEHFHKCLCCKASEWSSDDSDPENEMNRLDDDDEAGRTDHQIQTNNAEKSDTIVVKKAQNSSGKVCTECGKTYKTNYKLSEHMRKHTGENRRYELSCPTCGKGFQCKSYLMVHQRVHSNIKPFPCTTCGQNFKTKQSLLDHTNRHLGVKPHICDICGRGFITKGLCRAHKKIHSGLDNRKYSCDVCDKMFVSKSYLQTHHEFIPAKNHLCARKSFVCEMCGKAFARRDALRCHRRSHTGERPYSCDLCGQTFTQFTPMAIHKRLHTGERPYSCETCGKAFVSRSTMMSHAKKHV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00057057;
90% Identity: -
80% Identity: -