Avir000977.1
Basic Information
- Insect
- Altica viridicyanea
- Gene Symbol
- -
- Assembly
- None
- Location
- GWHAMMQ00000011:1785711-1790892[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.29 8.9 7.0 0.4 3 23 177 198 176 198 0.95 2 14 0.0016 0.051 14.0 2.9 2 23 229 250 228 250 0.97 3 14 0.003 0.093 13.2 1.6 3 23 258 279 257 279 0.96 4 14 0.02 0.61 10.6 0.1 2 23 285 306 284 306 0.97 5 14 0.15 4.7 7.9 1.1 3 21 311 328 309 329 0.92 6 14 0.5 16 6.2 1.0 3 13 402 412 401 417 0.82 7 14 0.32 9.9 6.8 1.5 11 23 430 442 427 442 0.91 8 14 0.009 0.28 11.7 0.2 1 23 448 470 448 470 0.99 9 14 0.00011 0.0034 17.7 2.1 1 23 476 498 476 498 0.97 10 14 1.7e-06 5.4e-05 23.4 2.5 2 23 504 525 504 525 0.98 11 14 7.7e-06 0.00024 21.4 2.0 1 23 531 553 531 553 0.97 12 14 1.2e-07 3.7e-06 27.1 0.7 1 23 559 581 559 581 0.98 13 14 0.0031 0.096 13.2 6.6 1 23 587 609 587 613 0.97 14 14 0.17 5.3 7.7 0.2 3 23 622 642 620 642 0.97
Sequence Information
- Coding Sequence
- ATGTCTGCACAAATACAAGATATGAAGTTTAATGAATTATGTAGAGTTTGTTTAACTAGAACTGATAATATGAAACAGCTTTTAACTATTTTTGGAACTGCAACTGATTTACTTTCAAAACTAACATCACTTATAAATTGTCAGATTGATCTTACAAATATTAATCACCCCAATTCTATTTGTTTGAAATGCGAAGAACTATTAAACACATCTTATGATTTTCAACAATTAAGTATACAATCTCACAAGTTCATTGTAGAGTTAAAAGAAACAATCAAAGAAGATGTAACTGAAACAAAACACCATGAAGTTAAAGAAGAGCATGATGTATTTGAAGAAATATCAATCGTTTACGAACAATCTGATAACGTTTCTAGTGATGAAGATTTTGAGGCGGAGAAAGTAAAGAAAACAAGTAAAAAGGTTAAAGTGAAAGAAAAGGGGGCTACTAAAGTTAAAATATGTGATCCAGATGAAGTTTTACAATATATTAAGCTTGTTAAAATGAAGTTTTATGATTCTAGAAATTGTTTATTTTGTGGTTTTTCAGCCAGTAATGTTCGAACCCTTTCTGTACACATGTCACGGTTACATGGTGCTTTTAAAGATAACTGGTGCTGGAAATGTAATAGGGTAGAAGATAATTTAGCAGAACATACAGAAATTGTTCATAAGGATGAGTTAAAATGTCCTTTTTGTGAAAAACGGAGTACTACCAGTAGTCATTTTGTAGAACATTTATCACGTCATACAGTTAAACTCAAAAACATTTGCCAATTATGCGAAAAAGGATTCGTATCAGTTCGTCATTTAAAATCTCATTATAAGAAAGTCCATAATGGCCAACTAGTAACTTGTGATGTGTGTTTGATGGATTTTACTGATAAACTATTGTTAATTGAACATTTAAAAATTCATAGAAAAATTAATTGTAAAGTGTGTGATAAATATTTTAATGAAGATGAATATAATACTCATATTTGTTTTAAAAAGGAAATTAAAACTGATACGAACAGTGATAGCACGGCTGATGAGAATATTGAAAATAAAAATGGACAGAATACAATTATTTGTGGACAAAATATTAATAATATAAAATCTCATCGGTTTTGTGAGCTTTGTAAAAGAAAAGTTAGAAATCTTAAACATCATATACAAAAGCATCATAGTGAAAATAGTAAAAAGGATGAACCAAAAGCACTTTGCACCTACTGTGGGAAACAATTCAAGTATTTTATTTATTTTACTAAGTATTTGTTGTTTTTTTTTATAATTTTACGTATTTCCAGACACCAATCAAATTTAGATGTACATATGAGGACACATACAAAAGAAACTCCGTATAAATGCAGTTATTGCGAAGTTGCTGTTGCTACAAGAACTAGATTGGTGGACCATGAGAGAACACATACTGGAGAAAAGCCTTTTATATGCAAGTTTTGTGGGAAAGCATTTAAACAACATGGCGTATTAAATACTCACTTAAAATTACACACTGGACGTACCGAACAATGTTTATTATGTCCCAAGAAATTCTGTAGGCCTTCTGAATTAAAAAATCATATGCGAATACACACAGGAGAAAAACCGTTCGCATGTACTTATTGTGAAAAAAGTTTTATTCAAAGGAGCCATTTGGTAGAACATACAAAGATTCATACTGATCATCGACCATTTAAATGTAATATTTGTGGTAAAGCTTTTAAACAGTCGAGTACATTAAAAGGGCATCTTAATGTTCATGAAGGTAAAAAGATGTATAAATGCACTATTTGCTCGTATAGTTGTAGAAAAAATTATACTTTAAAACAACATCTACTACAGCATCAAAATACACATCAAGTACAAGAGGGTGGTTATGGTTGTGAAACGTGTGAAGAAAAATTCCCTAATTTAGAAATATTGACTTCTCATCGATCTACACACCAAGAAACTTTAACTATTCCTGAAAATATTACTCTTGATATTAAATTTTAG
- Protein Sequence
- MSAQIQDMKFNELCRVCLTRTDNMKQLLTIFGTATDLLSKLTSLINCQIDLTNINHPNSICLKCEELLNTSYDFQQLSIQSHKFIVELKETIKEDVTETKHHEVKEEHDVFEEISIVYEQSDNVSSDEDFEAEKVKKTSKKVKVKEKGATKVKICDPDEVLQYIKLVKMKFYDSRNCLFCGFSASNVRTLSVHMSRLHGAFKDNWCWKCNRVEDNLAEHTEIVHKDELKCPFCEKRSTTSSHFVEHLSRHTVKLKNICQLCEKGFVSVRHLKSHYKKVHNGQLVTCDVCLMDFTDKLLLIEHLKIHRKINCKVCDKYFNEDEYNTHICFKKEIKTDTNSDSTADENIENKNGQNTIICGQNINNIKSHRFCELCKRKVRNLKHHIQKHHSENSKKDEPKALCTYCGKQFKYFIYFTKYLLFFFIILRISRHQSNLDVHMRTHTKETPYKCSYCEVAVATRTRLVDHERTHTGEKPFICKFCGKAFKQHGVLNTHLKLHTGRTEQCLLCPKKFCRPSELKNHMRIHTGEKPFACTYCEKSFIQRSHLVEHTKIHTDHRPFKCNICGKAFKQSSTLKGHLNVHEGKKMYKCTICSYSCRKNYTLKQHLLQHQNTHQVQEGGYGCETCEEKFPNLEILTSHRSTHQETLTIPENITLDIKF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -