Basic Information

Insect: Altica viridicyanea
Gene Symbol: -
Assembly: None
Location: GWHAMMQ00000933:253603-259808[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.038 1.2 9.7 1.9 1 19 106 124 106 124 0.96

2 12 0.071 2.2 8.9 1.5 3 23 133 154 132 154 0.92

3 12 1.9 58 4.4 0.2 5 18 182 195 181 195 0.92

4 12 1.2 38 5.0 0.1 2 18 209 225 208 225 0.90

5 12 7.9e-05 0.0025 18.2 0.4 2 23 306 327 306 327 0.97

6 12 9.9e-05 0.0031 17.9 1.5 1 23 333 355 333 355 0.98

7 12 3.1e-05 0.00097 19.5 3.0 1 23 361 383 361 383 0.98

8 12 4.9e-05 0.0015 18.8 8.1 1 23 389 411 389 411 0.99

9 12 2.8e-06 8.8e-05 22.7 2.0 1 23 417 439 417 439 0.95

10 12 6.6e-05 0.0021 18.4 3.2 1 23 445 467 445 467 0.98

11 12 8.7e-05 0.0027 18.1 1.4 1 23 473 495 473 495 0.98

12 12 4.5e-06 0.00014 22.1 8.4 1 23 501 523 501 523 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.038	1.2	9.7	1.9	1	19	106	124	106	124	0.96
2	12	0.071	2.2	8.9	1.5	3	23	133	154	132	154	0.92
3	12	1.9	58	4.4	0.2	5	18	182	195	181	195	0.92
4	12	1.2	38	5.0	0.1	2	18	209	225	208	225	0.90
5	12	7.9e-05	0.0025	18.2	0.4	2	23	306	327	306	327	0.97
6	12	9.9e-05	0.0031	17.9	1.5	1	23	333	355	333	355	0.98
7	12	3.1e-05	0.00097	19.5	3.0	1	23	361	383	361	383	0.98
8	12	4.9e-05	0.0015	18.8	8.1	1	23	389	411	389	411	0.99
9	12	2.8e-06	8.8e-05	22.7	2.0	1	23	417	439	417	439	0.95
10	12	6.6e-05	0.0021	18.4	3.2	1	23	445	467	445	467	0.98
11	12	8.7e-05	0.0027	18.1	1.4	1	23	473	495	473	495	0.98
12	12	4.5e-06	0.00014	22.1	8.4	1	23	501	523	501	523	0.99

Sequence Information

Coding Sequence: ATGAATTTTACTGATTCAGATTCCGAGGTATATGAATCAGACATTGATTTTAATGTACTAGATTTAGAATTAATAGACGTAAATATAAAAACCGAATGTTCTATTGAATACGACTACGAGGAAATTAATGTTAATAATTGTGATATAAATAATGATAATCCTCCACCTATTAAACAGGAATTTGAAGGTACAGATTTAGAAATAAAGAACGAACTATTACATAGTGTTTGCGATTTACCTATACTGAAAAGTGAGTATATTGAAGTTGCAGATGGAAATACACAGCAAAGAAGAAAAGAGAAAGTGGCTAATAACTACAAGTGTCCTTTTTGCAAAATAAGGTTTTCATCGGAAGATCAACGATTTAAACATGATTGTAAGAGATATTCGGAAATTTGTGCTTATTGTGGAGAATATTTCTATCACAGAACCCAGTTTTTAATCCATTTTTATAGGCAGCATTTCATAAAAAAACCCAAAAACAGTGGTAAAAAGGAAAATATTCATTATAAAAAAAAAGATGTAAAGCATCTTCAATATGCTGTTTGTACAAAAAAATTTCAAACACAACGCCACCTAAAACGCTTGACGCGAATGCATTGGAATAACGGAAAAAATAGCATGAAATGTAAAATTTGTTTGGAAATGTTTAAAGTGAATGATCGACTTCGAAGAGATAAGCCTAAAGCAAAACCAGTTTGTTGCAAAATCTGTTCGAAATCCTCCAATAAGACAAGACGTAGTGGAAAAAATACTCTTAAATGCAAAATTAGGTCAAAAGTCCCTCCAAAATTGCATATGAAAACTCACATCCGTAAAAACCGTTCATATAATTGTGAATCTTTTACTCATACATTTACACTTGAAAATACTTTAAGAGAAAATTTGAAAACACAAAATAAAAAGAAAACAAATGAATGTGAAATTTGTTCCAATAGTTTTAATTATAAATATCAATTAAAGGAACATATGATAATACACACTGGAGAAAGGCAATTTAAATGTGAAATTTGTTCAAGCACCTTTGGATTCAAAACATCGTTAAGGAAACATATGCTAATACACACTGGAGAAAAGCCATTTAAATGTGAAATTTGTTCACACAACTTTCGAGAAAAATCAACTTTAAAAAGTCATATGCTAATACACACTGGAGAAAAGCCATTTAAATGTGAAATGTGTACACACACGTGTCGAACAAAATCACAGTTAAAAAAACATATGCTCACACACAATGGAGAAAAGCGTTTTTTATGTGACATTTGTTCACACACCTTTAGAGATAAATCAAATTTAAACTCACATATGCTAATACACGCTGGAAAAAAACCATTTAAATGTGAAATTTGTTCACACAACTTTCGAGAAAAAACAACTCTAAATAAACATATGCTAATACACACTGGAAAAAAGCCATTTAAATGTGAAATTTGTTCACACAACTTTCGAGAAAGAGCAACTTTAAGAATTCATATGCTTATACACACTGGAGAAAAGCCATTTAAATGTGAAATTTGTTCACACAGTTTTCGACGAAAAACACATTTAAATCGACATATGAAGAAACACGGGACAACAGCCATTTAA
Protein Sequence: MNFTDSDSEVYESDIDFNVLDLELIDVNIKTECSIEYDYEEINVNNCDINNDNPPPIKQEFEGTDLEIKNELLHSVCDLPILKSEYIEVADGNTQQRRKEKVANNYKCPFCKIRFSSEDQRFKHDCKRYSEICAYCGEYFYHRTQFLIHFYRQHFIKKPKNSGKKENIHYKKKDVKHLQYAVCTKKFQTQRHLKRLTRMHWNNGKNSMKCKICLEMFKVNDRLRRDKPKAKPVCCKICSKSSNKTRRSGKNTLKCKIRSKVPPKLHMKTHIRKNRSYNCESFTHTFTLENTLRENLKTQNKKKTNECEICSNSFNYKYQLKEHMIIHTGERQFKCEICSSTFGFKTSLRKHMLIHTGEKPFKCEICSHNFREKSTLKSHMLIHTGEKPFKCEMCTHTCRTKSQLKKHMLTHNGEKRFLCDICSHTFRDKSNLNSHMLIHAGKKPFKCEICSHNFREKTTLNKHMLIHTGKKPFKCEICSHNFRERATLRIHMLIHTGEKPFKCEICSHSFRRKTHLNRHMKKHGTTAI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -