Avir009878.1
Basic Information
- Insect
- Altica viridicyanea
- Gene Symbol
- -
- Assembly
- None
- Location
- GWHAMMQ00000386:386793-391519[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 1.2 38 5.0 0.1 2 21 164 183 163 184 0.91 2 14 0.47 15 6.3 1.0 1 23 196 218 196 218 0.90 3 14 0.0041 0.13 12.8 0.6 2 23 225 246 224 246 0.95 4 14 0.0095 0.3 11.6 3.9 2 23 252 273 251 273 0.97 5 14 0.066 2.1 9.0 5.0 1 23 279 302 279 302 0.95 6 14 0.00016 0.005 17.2 0.6 1 23 306 328 306 328 0.97 7 14 2.1e-05 0.00065 20.0 0.1 1 23 332 355 332 355 0.95 8 14 0.00023 0.007 16.7 1.9 1 23 367 389 367 389 0.96 9 14 4e-05 0.0012 19.1 0.3 1 23 395 418 395 418 0.91 10 14 0.052 1.6 9.3 2.9 1 23 426 448 426 448 0.97 11 14 0.00027 0.0085 16.5 2.0 2 23 460 481 459 481 0.96 12 14 3.6e-05 0.0011 19.3 0.2 1 23 487 509 487 509 0.97 13 14 6.5e-07 2e-05 24.7 2.3 2 23 525 546 524 546 0.97 14 14 0.00016 0.0051 17.2 2.2 1 23 555 577 555 577 0.93
Sequence Information
- Coding Sequence
- ATGTATCCGAATCAGAATAATTCGCAAACACTTTCAGAGGATGAAATAAACATAGCTTGCAGAGCATGCTTAAAGAAAAATGCAACAGTGAATCTTTTTAATACACGGTTTGCTGGAGGAATACGTTTATGTGATTTATTACTATTATTTAGTGATTCCGATATTCAAGAATCTGATGGTTTACCTGATAAAGTATGTGAAAAATGTGTAGGTTTTTTAGAAAAAGCTTCGTTATTTCGGGAAACTGTGAAAAGTTCTTTAATTACTTTACAATCAGTTGTGAATAAGGAACCAAAACCAGAAATTGAATACAACACTGTAAAAGATCTTTTAAATGACTTTACTGATGATAATAATGAGAATGACCCGATATATGATTACAATTACGAAAATAATGAGAATGATCCGATATATGATTACAATGACGAAAATAATGATTTGAACTTGTGTGGAGATACTTTAAATTTTTCAACACAAAATGAATCTCTTATATGTTCTTTTTGTAAAATCAAATTTATATCAGAGGATGTATATAAACTGCATATTGCTAAAGAAACAGAAATAAGAAATGAAAAACCCAAGAATCACGAATGCCCAGTGTGTAATGAAACTTCTACTAATACAGAACTTCGTGATGCTCATTTACACCTGCATTCCGAAGTTGGTCAGTTACGATGTAAACTTTGTTTTAGAGTCTTTGGAGATCCTTCTAGACTTGTTCGCCATTTCAAAGGTCATGGGAAAAATATGAAAGAATGTCAAATTTGCCATAAACAATTCTTTAAATCTCAAGTGTTTGAGGATCACATGAGAAGACATGAAGGTATCCTTAACTTCTCCTGCAGTAAATGTGACAAAAAATTTATAACTTTGCAGAATTGTAGATCACATGTATCACGATATCATGGTGGAACCTACAAATGTAAAGTTTGTGGTAAAATTTTCAATTCTTCTGTGAATGGTAGACGACACGAGCGTGGTCATAGTCAAAAGTTTTTGTGTAACGAATGTGGTTTACAAGTTTCTACTGCTGCAAACCTCCGTAGACATATTAGAGTTGTTCACAAACATATAAAAAGTAATTTAACAGGTCCAGATTTTGCCTGCGAGGTATGTGGAAATACGTATAAAAGAAAATTTCACTTGGAACAACATCTAGTGAAACACAGTGATGAAAGGCCCTTTTTGTGTGCCGAATGTGGAAAATCCTATAAATCAAAATATGCATTGCAAAACCATGTTGATATCTCTCATGGTGAAACAACAGATGGATTTTTTAATTGTACAGAATGTAAACGTTCATTTTTATCAGAAGCAAGATTAAAAAAACATTTTCAACGACATGAGAATGGTACTTTTAATGGTAAGAATTATTTGACTTGTCCCACATGTGGTAGGACTTTTAAATCTGTAAAATTTTTTAACCAACATCAACAATATCACTCAAAAAAGTTACCATATGCATGTGAGTATTGTCCTAAATCTTATGTGGTTAAAGGTTTCTTAGAGAAGCATATGACAGTCCATTTACAAGGTGCAAAACCTTGGCTTCCTACCTCAACTGAATTAAAAAGCTGTCCTTATTGTCCAAAACAGTTTAGGCACCAAAGTAACCTTTCTAATCATATTAAAGTGCATGGAGTAGGATTAGATAACAGACCTTTTAAATGTTCTATGTGTACCAAACAGTTCAAAACCCTTAAAAATTTAACTCAACACGAAGTTTTGCATTTCAAATCAAAAAATGATAGTCCTAGTAAGAAATTGTCAATGCCTGTTCTTGTTGAACAAAACGAAGATAATTATGATAGTTCTGCATGGGGATATATGTCGATGGATATGAAAAGTGAGAATAATAAAGAAGAATATGATGAATGTAATCAAAGCCAAGATGAAGATGATAGTCAAAACCTAGAAGAAAAATATAGTCAAAATCAAGAAGATGGTTATTCTTCATAA
- Protein Sequence
- MYPNQNNSQTLSEDEINIACRACLKKNATVNLFNTRFAGGIRLCDLLLLFSDSDIQESDGLPDKVCEKCVGFLEKASLFRETVKSSLITLQSVVNKEPKPEIEYNTVKDLLNDFTDDNNENDPIYDYNYENNENDPIYDYNDENNDLNLCGDTLNFSTQNESLICSFCKIKFISEDVYKLHIAKETEIRNEKPKNHECPVCNETSTNTELRDAHLHLHSEVGQLRCKLCFRVFGDPSRLVRHFKGHGKNMKECQICHKQFFKSQVFEDHMRRHEGILNFSCSKCDKKFITLQNCRSHVSRYHGGTYKCKVCGKIFNSSVNGRRHERGHSQKFLCNECGLQVSTAANLRRHIRVVHKHIKSNLTGPDFACEVCGNTYKRKFHLEQHLVKHSDERPFLCAECGKSYKSKYALQNHVDISHGETTDGFFNCTECKRSFLSEARLKKHFQRHENGTFNGKNYLTCPTCGRTFKSVKFFNQHQQYHSKKLPYACEYCPKSYVVKGFLEKHMTVHLQGAKPWLPTSTELKSCPYCPKQFRHQSNLSNHIKVHGVGLDNRPFKCSMCTKQFKTLKNLTQHEVLHFKSKNDSPSKKLSMPVLVEQNEDNYDSSAWGYMSMDMKSENNKEEYDECNQSQDEDDSQNLEEKYSQNQEDGYSS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -