Basic Information

Insect: Altica viridicyanea
Gene Symbol: -
Assembly: None
Location: GWHAMMQ00000327:464318-466078[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.0001 0.0031 17.8 3.6 1 23 151 173 151 173 0.99

2 11 2.5e-06 7.8e-05 22.9 2.6 1 23 178 200 178 200 0.99

3 11 0.00012 0.0036 17.6 1.2 1 23 208 230 208 230 0.97

4 11 0.00042 0.013 15.9 1.7 1 23 236 258 236 258 0.98

5 11 8.6e-06 0.00027 21.2 2.5 1 23 267 289 267 289 0.96

6 11 8.8e-05 0.0027 18.0 1.0 1 23 295 317 295 317 0.97

7 11 0.014 0.44 11.1 0.6 1 23 323 345 323 345 0.98

8 11 7.1e-06 0.00022 21.5 2.1 1 23 351 373 351 373 0.98

9 11 3.4e-05 0.0011 19.3 0.6 3 23 381 401 380 401 0.99

10 11 1.1e-05 0.00035 20.9 1.2 1 23 407 429 407 429 0.98

11 11 3.5e-05 0.0011 19.3 2.0 1 23 435 457 435 457 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.0001	0.0031	17.8	3.6	1	23	151	173	151	173	0.99
2	11	2.5e-06	7.8e-05	22.9	2.6	1	23	178	200	178	200	0.99
3	11	0.00012	0.0036	17.6	1.2	1	23	208	230	208	230	0.97
4	11	0.00042	0.013	15.9	1.7	1	23	236	258	236	258	0.98
5	11	8.6e-06	0.00027	21.2	2.5	1	23	267	289	267	289	0.96
6	11	8.8e-05	0.0027	18.0	1.0	1	23	295	317	295	317	0.97
7	11	0.014	0.44	11.1	0.6	1	23	323	345	323	345	0.98
8	11	7.1e-06	0.00022	21.5	2.1	1	23	351	373	351	373	0.98
9	11	3.4e-05	0.0011	19.3	0.6	3	23	381	401	380	401	0.99
10	11	1.1e-05	0.00035	20.9	1.2	1	23	407	429	407	429	0.98
11	11	3.5e-05	0.0011	19.3	2.0	1	23	435	457	435	457	0.98

Sequence Information

Coding Sequence: ATGAATTTAGAATTTAACGATGAAGCAATTTACAAAAAAATGTGCAGAATATGTTTAAATGATTCCAATAACATAAGTGATTTATTTACACTTAAAATACTCAAAGATAATACAGCAGCGGTGGACTTTATTAGGAAAATGACCGATTTGAAATTACAATATTCGGAAAGTCTGCCATCAAGTATATGTGATGAATGTAAACAACATCTCTTTGAGGCATTTGACTTTGTGGAACTATGTATAGCCTCCGATTCTCGACTTAGAACACTTGAAACCAGACGAATGTTAAGAAAAATAGAAGCAGAAGCACTTGATTTAGAAAGTGAAGATATAATTGTAAAATGTGATATCTCCACAGAAACACCAATACAAAATTTAGAAGTTCTTATAGAAAAAGAGAATCCTTTACCAAAGGAATTACAGTTTACAGTCGCCAGAACAAAAGATAAATACAAATGTGATAAATGTAGTGTTAGATTTAATAATAAAACTAAGTTTAATAAACATATTAAAATACATCAAGAAAATATTTATAAATGCACAAAATGTCCGTCAAGTTTTAATAAGAAATCTAATTTAAATATACATTTAAAAACTCACTTGGGCGAGGGAGATAAAAAATTTAGTTGTGAACAATGTGGCAAAGATTTCATTTTTGAGTATTTACTAAAACAACATATATTCAAACACCAGGACATTAAACCATTTCCGTGCACTAAGTGTAATAAAGGATGTTTAACAGCAGAAAGTCTTCGCCGGCACATGATAACTCATGATGCTAATTACGAAAAGAAGAGCCACATTTGCCATTTATGTAATAAATCTTTCGCGTATCCTAGTACGTTAGCTGAACACATGAAAAATCACACCGGTGAAAAACCCTTTATTTGCAATATTTGTGGTAAAGGATTTAGACAAAGTGGTGGTCTTCACTTCCACCAGAGAATTCATACAGGCTATAAACCATTTCCTTGCAGAGTTTGTAAAGAAAATTTTATGGCTAGAAGTATCTTAAAAGTTCATATGAGAAAACATACAAATGAACGACCGTACGTATGTGATGCTTGTGGCATTTCATTTAGACAATGTTCTGATTTGAAGAGTCACAAAAGAACACATACTGGAGAGAAATTGGTTTTATGTACTGTATGTGGCAAAAAACTTTCTACAACAGGACAATTAACTGTTCACCTACGGACCCATACTGGAAAAAAACCATTTACATGTTCTACTTGCAACAAATCGTTTGCTTCCAAAACAATGTTAGTAACCCATGAAAGAATTCATACAGGTGAACGACCATATGTATGCAGTATTTGTGACAAAAATTTTAGTCAAAGTTGCACACTGAGTGCACATTCCAAAATACACAATAAAATGAATAAAGAAACTAAAAATATGAAGACAGTAAAGAATTCTAGTGAACGAGTTAGTTTGAAGAAAAAAATAGCAGACTTGAAGAGAAAAGCATTAATATCAGAACAGGAAGAATTTCTAGAAAACCAATTTGAAAAAATTGAGCAAAGAACAGATTTTTCTGTTAATATACTTTTATCGGAAACTGAAAAGATACAGAATATTGGTGTCGATGCTTAA
Protein Sequence: MNLEFNDEAIYKKMCRICLNDSNNISDLFTLKILKDNTAAVDFIRKMTDLKLQYSESLPSSICDECKQHLFEAFDFVELCIASDSRLRTLETRRMLRKIEAEALDLESEDIIVKCDISTETPIQNLEVLIEKENPLPKELQFTVARTKDKYKCDKCSVRFNNKTKFNKHIKIHQENIYKCTKCPSSFNKKSNLNIHLKTHLGEGDKKFSCEQCGKDFIFEYLLKQHIFKHQDIKPFPCTKCNKGCLTAESLRRHMITHDANYEKKSHICHLCNKSFAYPSTLAEHMKNHTGEKPFICNICGKGFRQSGGLHFHQRIHTGYKPFPCRVCKENFMARSILKVHMRKHTNERPYVCDACGISFRQCSDLKSHKRTHTGEKLVLCTVCGKKLSTTGQLTVHLRTHTGKKPFTCSTCNKSFASKTMLVTHERIHTGERPYVCSICDKNFSQSCTLSAHSKIHNKMNKETKNMKTVKNSSERVSLKKKIADLKRKALISEQEEFLENQFEKIEQRTDFSVNILLSETEKIQNIGVDA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -