Avir011896.1
Basic Information
- Insect
- Altica viridicyanea
- Gene Symbol
- -
- Assembly
- None
- Location
- GWHAMMQ00000051:510971-523928[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.084 2.6 8.6 2.3 2 23 152 173 151 173 0.96 2 14 3e-05 0.00094 19.5 4.5 1 23 178 200 178 200 0.98 3 14 0.0014 0.042 14.3 4.1 1 23 206 228 206 228 0.97 4 14 0.015 0.46 11.0 2.1 1 19 234 252 234 253 0.96 5 14 3.6e-06 0.00011 22.4 0.2 1 23 262 284 262 284 0.98 6 14 0.014 0.45 11.1 0.9 1 23 512 535 512 535 0.96 7 14 0.0019 0.059 13.8 7.1 1 23 541 563 541 563 0.98 8 14 4.7e-06 0.00015 22.0 5.0 1 23 569 591 569 591 0.98 9 14 2.5e-05 0.00079 19.7 2.2 1 23 597 620 597 620 0.94 10 14 0.015 0.47 11.0 1.2 1 23 634 656 634 656 0.87 11 14 0.00072 0.023 15.1 4.1 1 23 662 684 662 684 0.97 12 14 3.4e-06 0.00011 22.5 0.5 1 23 691 713 691 713 0.96 13 14 4.4e-06 0.00014 22.1 1.2 1 23 719 741 719 741 0.98 14 14 6.4e-07 2e-05 24.7 0.9 3 23 749 769 747 769 0.96
Sequence Information
- Coding Sequence
- ATGGAAATCGCGAATCTAAATGAGATTTGCCGGACGTGTAAATGTTCCAGTACACAAATGCGATCGTTATTTGAAGGATATGAAAATCCTCATCAAAGTCCCCGTATTGACGAGATGCTAATGGCTTGTGCTTCAGTTCAGATAATATGTGGCGACGGTTTACCATCACTAATATGTCAAATATGTGTCGAACAATTAAAAAATGCTTTTCTATTCAAAAAACAAGTAGAAAAAATCGATTTATCTTTAAGAGAGTACGCGAAAAATCTGAAAGTTAACGAAATTAAAGAAGAATTACAAAATTCCGAATTTATGGAATCATTGAGTACACTTGAAAGTATATTAGATCAACAAAATATTACTAAAGAGATTACAAATGGTGAAAATACAATACAAAGTCAAAAATTTGAAACTGATTATATACAATTTATGGATAATAATCAAATGTTGCTTACATGTCGAGAATGTGCTAAAATGTTTACTACTTTAGAGGGTTTACGTTGCCACAAACGTATTCATACCGGAGGTATGTACAAATGCAAACAATGCGATAAAGAATATACGCGTTTAAATCATCTTCAACGACACGAACAATCTCATAATCGAAGAAAAGTTCACGTTTGCCGAATTTGCAGTAAAACTTTAACACGAATGGAACATTTAAAACGACATTTGGTTACGCATCTTAGGGAAAAACCATTTTCTTGTAAAACTTGTAATAGAGGATTTAATCGAATTGAACATTTACATAATCATGCACCAAGATGTAAAGGTGATACAGTTTATCCATGCGATATTTGTAATAAAGCATTTAATCGCGAAGATAGTTTGGAAGTACATAAAAAAATGCATGATAATCAAACACCGAAATTACCAACAATTGAAAATTTGGATAATATTGAAGATCATTATTATCAAATTGATCAAGATGCCGGTGCTGATTTTTCTGATCATGATGATGATCATTCTGACGTTGATGATTGTTTTGAACCGCACGTTGAAGTCACTGAAACTGATGATGATAAATTAAAGGTTGTTGCTGAAATATCATCAAATCAAGATAAAGAAGAAGATAGTATATTTCAAGAAGGTGGAGATGGAGAAATTGATAATGATGGAGATGTTGGAAATGATGCAGAAGATAATGATAGTGATAATGATGATGATTTCGATAAAGATAATGATGACGATAGTGATGATGAACGTGATAATAAAGATGTATTAAAAGAAATTAATGAAGATAAAATTGCAGTTAAAATTGAAGAAAGTAAAGTGTTGAAAAATGATGATGATGATGATGATGAATTTATTAGAGAAGCTATTGAAGATGCTGAAGCTGATGATGACGAATCAGATAAAGAAAGCAACGATTCCGATTACAGACCACAAAAAGTCGTAACAAAAGTGAAACGAGGTCGAGGACGACCACGAAAAGACCCGAACGCTCCTCCGAAGACACCGAAAGTAAAAACACCAGGAAAACGTGGAAGGAAACCTGGTTCAAAAATAAAAGAAGAAGATGAAATTGGTGAATTTCCATGTCCAGTTTGTAATGAAATGTTTCATACAATGATGAAATTGGATAAACATGCTAAAGTTAAACATGATGGCGCTAAAATTCACAAATGCAACGTGTGCAGTAAAGAATTTGCACGGATTTGTCATTTGAAACGACACATAACCTCACATTCAACAATAAAACCATTCCGTTGTAATGTTTGTACGAAGAGTTTCAATCGACGTGATCATTTAAATCAACATCAAAAATTACATGAAAGACAAAATGATCACGAATGCGATATTTGTCAAAAACCGTTTACACGAGCTGATCATCTTGCTAAACATAAAGCATCGAAACATGGAATTGGAGAAAGAATATCAATAATGGGAGAAAAGAAATACGAATGTCCACTATGTCATAAATTTTTCACAACAGAAAAATATCGTGATGTTCATGTAGCTGGTCATAATGGTTCGAAAGAATATTCATGTAAAGTTTGTGAAAAAACGTTTTTATCGAAATCACATTTAACAGAACATTTAAAATTCCACAACGAACATTCCAAAAAGTTTCTTTGTTCTGAATGTGGACAAAGATTTATTAGAAATGATTATTTGGTTATTCATATGCGAAGACATCGTGGTGAGAAACCGTTCAAATGCAAATATTGTGGAAAAGGTTTCCCAAGAACAACAGATCTGACTGTACACGAAAGATACCATACTGGAGAAAAAACTCATTTATGTACAATTTGTGGAAGAGGATTTGGACGAGCATATAATTTAACTGTTCATATGAGAACTCATACCGGGGAAAAAACCGTATCAATGTACATATTGCGATGCAGCTTTTGCACAAGGAAACGATTTGAAAGCTCATGTGAGAAGACATACGGGTGA
- Protein Sequence
- MEIANLNEICRTCKCSSTQMRSLFEGYENPHQSPRIDEMLMACASVQIICGDGLPSLICQICVEQLKNAFLFKKQVEKIDLSLREYAKNLKVNEIKEELQNSEFMESLSTLESILDQQNITKEITNGENTIQSQKFETDYIQFMDNNQMLLTCRECAKMFTTLEGLRCHKRIHTGGMYKCKQCDKEYTRLNHLQRHEQSHNRRKVHVCRICSKTLTRMEHLKRHLVTHLREKPFSCKTCNRGFNRIEHLHNHAPRCKGDTVYPCDICNKAFNREDSLEVHKKMHDNQTPKLPTIENLDNIEDHYYQIDQDAGADFSDHDDDHSDVDDCFEPHVEVTETDDDKLKVVAEISSNQDKEEDSIFQEGGDGEIDNDGDVGNDAEDNDSDNDDDFDKDNDDDSDDERDNKDVLKEINEDKIAVKIEESKVLKNDDDDDDEFIREAIEDAEADDDESDKESNDSDYRPQKVVTKVKRGRGRPRKDPNAPPKTPKVKTPGKRGRKPGSKIKEEDEIGEFPCPVCNEMFHTMMKLDKHAKVKHDGAKIHKCNVCSKEFARICHLKRHITSHSTIKPFRCNVCTKSFNRRDHLNQHQKLHERQNDHECDICQKPFTRADHLAKHKASKHGIGERISIMGEKKYECPLCHKFFTTEKYRDVHVAGHNGSKEYSCKVCEKTFLSKSHLTEHLKFHNEHSKKFLCSECGQRFIRNDYLVIHMRRHRGEKPFKCKYCGKGFPRTTDLTVHERYHTGEKTHLCTICGRGFGRAYNLTVHMRTHTGEKTVSMYILRCSFCTRKRFESSCEKTYG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -