Avir008819.1
Basic Information
- Insect
- Altica viridicyanea
- Gene Symbol
- -
- Assembly
- None
- Location
- GWHAMMQ00000324:38189-44775[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 25 0.00033 0.01 16.2 0.3 1 21 79 99 79 100 0.95 2 25 0.033 1 9.9 0.4 1 23 130 154 130 154 0.95 3 25 0.00073 0.023 15.1 1.2 2 23 160 182 159 182 0.96 4 25 0.0065 0.2 12.2 1.2 1 23 200 223 200 223 0.95 5 25 0.00016 0.005 17.2 2.8 1 23 247 270 247 270 0.93 6 25 0.21 6.7 7.4 1.0 1 23 272 295 272 295 0.92 7 25 0.0044 0.14 12.7 0.4 3 23 299 320 297 320 0.90 8 25 0.0016 0.051 14.0 1.7 1 23 322 345 322 345 0.97 9 25 1.1 33 5.2 1.0 2 23 348 370 347 370 0.87 10 25 0.0058 0.18 12.3 1.3 1 23 399 422 399 422 0.93 11 25 0.011 0.34 11.4 0.8 1 23 428 451 428 451 0.94 12 25 0.0016 0.051 14.0 0.6 2 23 483 505 482 505 0.94 13 25 0.00048 0.015 15.7 4.4 1 23 507 530 507 530 0.91 14 25 0.18 5.8 7.6 0.4 1 13 536 548 536 559 0.80 15 25 0.011 0.34 11.4 1.1 1 23 561 584 561 584 0.87 16 25 0.045 1.4 9.5 0.5 1 23 586 609 586 609 0.86 17 25 0.0052 0.16 12.5 0.4 1 23 611 634 611 634 0.90 18 25 0.012 0.38 11.3 0.5 1 23 636 659 636 659 0.87 19 25 0.0034 0.11 13.0 1.4 1 23 690 713 690 713 0.97 20 25 0.22 6.9 7.3 5.4 2 23 716 738 715 738 0.92 21 25 0.00028 0.0087 16.5 0.2 1 23 744 767 744 767 0.94 22 25 0.02 0.61 10.6 6.3 1 23 769 792 769 792 0.92 23 25 0.36 11 6.7 0.3 1 23 798 821 798 821 0.86 24 25 0.76 24 5.6 2.0 1 23 824 847 824 847 0.89 25 25 0.032 0.99 10.0 1.8 1 23 867 890 867 890 0.90
Sequence Information
- Coding Sequence
- ATGTTTTCCTGTATTTATTGTGAGGATATATTAAACACAGAAAATGACCTGGAAAACCATATCGCTAGCGTACATGGTGCAGCGGGTATAACATTATTACCTGAACCGCTTGATAAAATATCTGAAGATACAGTGTCACTGCTTTATTCAAACAGTACTAAGCTATCAAAGCAGTTAAAAGTTCAGAAAGATAGAGAGAGAAATGCATCTTTGCTAAAAATTTCCGAATTACAATTTAGTTGTGTCCTTTGTAACAAGAAATTTAAACAAGTAGTTGACCTAAAAAAACATATTCAAATTGCATATGGATATGATCCATGTAAGGACTGTGTTAGTATTAAAACGAATGAAGACTTTGAATTGCATCTAAAAAATGTTCATAAAATATTTTCATGTCCTTTATGTAAAACAAAAATATTCAGTGACTTTGAATTATTGAGACAACATTTGATAAATGTACATCGAAATTGTGTTGTTGTATGTCATTATTGTTTAAAATTATTTCCTGATCAAAGTTACTTGAATTCACATTATCAAAAGGATCATATAGTAACTTCAGATATTGTTAAAGGAATTTGCGTTAGTAATTTACAAACTTTTGAATGCAAGTTGTGCTCTAAAACGTTTAATCAAGTTCAGGATTATGAATTACACAAATTAGTCAAACATAAAAATCAATTAAAACTTTCATCTAATGCTAATACGTCTACAAAAAAACAAATTGGAAAGATTCAAACCTATAAATGTGAATATTGTCCAAAGCAATATACAAAAAGTGAACACTTACAGCAACATGAAAATGACAATCATCGCTTTCCATGTAATTATTGTCACAACAAATTCGCTTCAGATACAGATCGAGAAAAGCATGTTCTAGAAATTCATGCAATTGCTTGTGAGTATTGTCCAAAGAAATTTATAAAGTTACAAGATTTGCTGAAACATAAAAGTGATAATCACTACTTTCCATGCACTCATTGTCCCAACATATTTACCTCAGCTGAAGATCAAAAACATCATATTCAAACAATTCATACAATTACTTGTGAGTACTGCTCAAAGAAGTTTTTAAAATTAGAAGATATACAACAACATAAAAAAGCTAAGCATAAGAACACAGTTCCCCATAATTATTGTGAGAACATATTTATTTCTGATTTGCCTAAACAAAATCCTACTGTAGAAGATGATAAATTTATATGTGAATATTGTCCAAATACATTTTCTAAATTGGACTCTTTATTGCAACATAAATTTTCTAAACATATGAATGTTAACTGTTTTCTCTGTGAATATTGCCTGAAAATATTTGACACTAAAACAAGCAGGCAAAATCACATTGATACTGTTCATGGAGTTAAATGTGAATATAGTGCGAAAAGTTTTAACAAAATGGAACATTTGCAACAGCATAAAGATGATAACCACGTAGGTATTGATTACGTTTCATGTGGTCATTGTAAACAAATATTCACCACTGTTGCATCTTTAAAAATCCATATTAAGGCATTTCATACTTTTCCTTGTGAATACTGTCCAAAAAAGTATACCCAGAATGAACATTTACAACAACACAAACATGGTAAACACAAAAATATAGACTATTTCCCATGTGATTATTGTCAAAAAGAATTTACAACAGTTAATGGCAAAGATAATCACTCTCAAGCAGTTCATACATTTAAATGCGATTATTGTAAAAAAATATTTACAACAGCTAAAGGCAAAGATAGTCACACTCAAGCAGTTCATAAATTCAATTGCGATTATTGTGAAAAAATATTTACAACAGCTAAAGGCAAAGATAGTCACACTCAAGCAGTTCATACATTCAAATGCGATTATTGTGAAAAAATATTTACAACAGCTGATGGCAAAGATAATCACACGCAAGCAGTTCATACATTCAAATGCGATTATTGTGAAAAAATATTTACAACTGCTAATGGCAAAGATAATCACACGCAAGCAGTTCATACATTTGAATGTGATTATTATTCCAAAATATTTGCCCAGGTAGAACATCTAAACCAACACGAAAATGATAAGCACAAAAATATCGATTACTTTATTTGTGAACATTGCCAAAAGAAATTTAATTCAATTACCGGGCGAAATGCTCATATTCAAACAGTTCATCTACTCACATGTGAATATTGCACCAAACAGTGTTCTAAAATTGAACACCTACAGCAACATAAAAACGATAAACATCTGATGATTGATTATTTCCCATGTGAATATTGTCTGAAAATATTTACAAGTGTTTCATCTCTAAATCAGCATATTTCTGGATCGCATTTATTTAAGTGCTGCTACTGTGAAGAACAATTTAGTAGCAAAATAAACTTAAGTAGACACAAACATGCTAAGCATGAGAACATTGATTACTTTCCATGTAATAGTTGCCAGAAAGAGTTTACTTCTGATAAAGGTAGAGAAACACACGTAGAATTGGTTCATTATATTTTTAGGTGCCTCTTCTGCTCAAAAAAATTTGCTACACTTGAATTGGCACACCAACATGAAAACGATACACATAAGAATGATGAATCTAGTCAAAATGTATCAGCTTTCAATGGTGGTAGTAAAGATAATTTTACTTGCAGTTACTGTGAGATGACATTCACTTCGAAATTACATAAAAATGTACATGAACTAGAAGCTCATGTTACAGCCGAAAACAAATTTACATCTGATAATAAACCACATCTTGCAGAATCTAAGCAAACTAATGACAACGAGACATTTGAAGTTACTAAAGGTGCTGAATTGCATAACCAGCTTATTACCTTTGGTATATTTGGTTGA
- Protein Sequence
- MFSCIYCEDILNTENDLENHIASVHGAAGITLLPEPLDKISEDTVSLLYSNSTKLSKQLKVQKDRERNASLLKISELQFSCVLCNKKFKQVVDLKKHIQIAYGYDPCKDCVSIKTNEDFELHLKNVHKIFSCPLCKTKIFSDFELLRQHLINVHRNCVVVCHYCLKLFPDQSYLNSHYQKDHIVTSDIVKGICVSNLQTFECKLCSKTFNQVQDYELHKLVKHKNQLKLSSNANTSTKKQIGKIQTYKCEYCPKQYTKSEHLQQHENDNHRFPCNYCHNKFASDTDREKHVLEIHAIACEYCPKKFIKLQDLLKHKSDNHYFPCTHCPNIFTSAEDQKHHIQTIHTITCEYCSKKFLKLEDIQQHKKAKHKNTVPHNYCENIFISDLPKQNPTVEDDKFICEYCPNTFSKLDSLLQHKFSKHMNVNCFLCEYCLKIFDTKTSRQNHIDTVHGVKCEYSAKSFNKMEHLQQHKDDNHVGIDYVSCGHCKQIFTTVASLKIHIKAFHTFPCEYCPKKYTQNEHLQQHKHGKHKNIDYFPCDYCQKEFTTVNGKDNHSQAVHTFKCDYCKKIFTTAKGKDSHTQAVHKFNCDYCEKIFTTAKGKDSHTQAVHTFKCDYCEKIFTTADGKDNHTQAVHTFKCDYCEKIFTTANGKDNHTQAVHTFECDYYSKIFAQVEHLNQHENDKHKNIDYFICEHCQKKFNSITGRNAHIQTVHLLTCEYCTKQCSKIEHLQQHKNDKHLMIDYFPCEYCLKIFTSVSSLNQHISGSHLFKCCYCEEQFSSKINLSRHKHAKHENIDYFPCNSCQKEFTSDKGRETHVELVHYIFRCLFCSKKFATLELAHQHENDTHKNDESSQNVSAFNGGSKDNFTCSYCEMTFTSKLHKNVHELEAHVTAENKFTSDNKPHLAESKQTNDNETFEVTKGAELHNQLITFGIFG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -